The genome of Populus alba x Populus tremula var. glandulosa clone 84K.
Identifieur interne : 000680 ( Main/Corpus ); précédent : 000679; suivant : 000681The genome of Populus alba x Populus tremula var. glandulosa clone 84K.
Auteurs : Deyou Qiu ; Shenglong Bai ; Jianchao Ma ; Lisha Zhang ; Fenjuan Shao ; Kaikai Zhang ; Yanfang Yang ; Ting Sun ; Jinling Huang ; Yun Zhou ; David W. Galbraith ; Zhaoshan Wang ; Guiling SunSource :
- DNA research : an international journal for rapid publication of reports on genes and genomes [ 1756-1663 ] ; 2019.
English descriptors
- KwdEn :
- MESH :
- chemical : DNA, Plant.
- genetics : Populus.
- Base Sequence, Cell Nucleus, Genome, Chloroplast, Genome, Mitochondrial, Genome, Plant, Sequence Analysis, DNA.
Abstract
Poplar 84K (Populus alba x P. tremula var. glandulosa) is a fast-growing poplar hybrid. Originated in South Korea, this hybrid has been extensively cultivated in northern China. Due to the economic and ecological importance of this hybrid and high transformability, we now report the de novo sequencing and assembly of a male individual of poplar 84K using PacBio and Hi-C technologies. The final reference nuclear genome (747.5 Mb) has a contig N50 size of 1.99 Mb and a scaffold N50 size of 19.6 Mb. Complete chloroplast and mitochondrial genomes were also assembled from the sequencing data. Based on similarities to the genomes of P. alba var. pyramidalis and P. tremula, we were able to identify two subgenomes, representing 356 Mb from P. alba (subgenome A) and 354 Mb from P. tremula var. glandulosa (subgenome G). The phased assembly allowed us to detect the transcriptional bias between the two subgenomes, and we found that the subgenome from P. tremula displayed dominant expression in both 84K and another widely used hybrid, P. tremula x P. alba. This high-quality poplar 84K genome will be a valuable resource for poplar breeding and for molecular biology studies.
DOI: 10.1093/dnares/dsz020
PubMed: 31580414
PubMed Central: PMC6796506
Links to Exploration step
pubmed:31580414Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The genome of Populus alba x Populus tremula var. glandulosa clone 84K.</title><author><name sortKey="Qiu, Deyou" sort="Qiu, Deyou" uniqKey="Qiu D" first="Deyou" last="Qiu">Deyou Qiu</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation></affiliation></author><author><name sortKey="Bai, Shenglong" sort="Bai, Shenglong" uniqKey="Bai S" first="Shenglong" last="Bai">Shenglong Bai</name><affiliation><nlm:affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</nlm:affiliation></affiliation></author><author><name sortKey="Ma, Jianchao" sort="Ma, Jianchao" uniqKey="Ma J" first="Jianchao" last="Ma">Jianchao Ma</name><affiliation><nlm:affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</nlm:affiliation></affiliation></author><author><name sortKey="Zhang, Lisha" sort="Zhang, Lisha" uniqKey="Zhang L" first="Lisha" last="Zhang">Lisha Zhang</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation></affiliation></author><author><name sortKey="Shao, Fenjuan" sort="Shao, Fenjuan" uniqKey="Shao F" first="Fenjuan" last="Shao">Fenjuan Shao</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation></affiliation></author><author><name sortKey="Zhang, Kaikai" sort="Zhang, Kaikai" uniqKey="Zhang K" first="Kaikai" last="Zhang">Kaikai Zhang</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>College of Horticulture, Agricultural University of Hebei, Baoding, China.</nlm:affiliation></affiliation></author><author><name sortKey="Yang, Yanfang" sort="Yang, Yanfang" uniqKey="Yang Y" first="Yanfang" last="Yang">Yanfang Yang</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation></affiliation></author><author><name sortKey="Sun, Ting" sort="Sun, Ting" uniqKey="Sun T" first="Ting" last="Sun">Ting Sun</name><affiliation><nlm:affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</nlm:affiliation></affiliation></author><author><name sortKey="Huang, Jinling" sort="Huang, Jinling" uniqKey="Huang J" first="Jinling" last="Huang">Jinling Huang</name><affiliation><nlm:affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</nlm:affiliation></affiliation></author><author><name sortKey="Zhou, Yun" sort="Zhou, Yun" uniqKey="Zhou Y" first="Yun" last="Zhou">Yun Zhou</name><affiliation><nlm:affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</nlm:affiliation></affiliation></author><author><name sortKey="Galbraith, David W" sort="Galbraith, David W" uniqKey="Galbraith D" first="David W" last="Galbraith">David W. 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Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2019">2019</date><idno type="RBID">pubmed:31580414</idno><idno type="pmid">31580414</idno><idno type="doi">10.1093/dnares/dsz020</idno><idno type="pmc">PMC6796506</idno><idno type="wicri:Area/Main/Corpus">000680</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000680</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">The genome of Populus alba x Populus tremula var. glandulosa clone 84K.</title><author><name sortKey="Qiu, Deyou" sort="Qiu, Deyou" uniqKey="Qiu D" first="Deyou" last="Qiu">Deyou Qiu</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation></affiliation></author><author><name sortKey="Bai, Shenglong" sort="Bai, Shenglong" uniqKey="Bai S" first="Shenglong" last="Bai">Shenglong Bai</name><affiliation><nlm:affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</nlm:affiliation></affiliation></author><author><name sortKey="Ma, Jianchao" sort="Ma, Jianchao" uniqKey="Ma J" first="Jianchao" last="Ma">Jianchao Ma</name><affiliation><nlm:affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</nlm:affiliation></affiliation></author><author><name sortKey="Zhang, Lisha" sort="Zhang, Lisha" uniqKey="Zhang L" first="Lisha" last="Zhang">Lisha Zhang</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation></affiliation></author><author><name sortKey="Shao, Fenjuan" sort="Shao, Fenjuan" uniqKey="Shao F" first="Fenjuan" last="Shao">Fenjuan Shao</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation></affiliation></author><author><name sortKey="Zhang, Kaikai" sort="Zhang, Kaikai" uniqKey="Zhang K" first="Kaikai" last="Zhang">Kaikai Zhang</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>College of Horticulture, Agricultural University of Hebei, Baoding, China.</nlm:affiliation></affiliation></author><author><name sortKey="Yang, Yanfang" sort="Yang, Yanfang" uniqKey="Yang Y" first="Yanfang" last="Yang">Yanfang Yang</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation></affiliation></author><author><name sortKey="Sun, Ting" sort="Sun, Ting" uniqKey="Sun T" first="Ting" last="Sun">Ting Sun</name><affiliation><nlm:affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</nlm:affiliation></affiliation></author><author><name sortKey="Huang, Jinling" sort="Huang, Jinling" uniqKey="Huang J" first="Jinling" last="Huang">Jinling Huang</name><affiliation><nlm:affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</nlm:affiliation></affiliation></author><author><name sortKey="Zhou, Yun" sort="Zhou, Yun" uniqKey="Zhou Y" first="Yun" last="Zhou">Yun Zhou</name><affiliation><nlm:affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</nlm:affiliation></affiliation></author><author><name sortKey="Galbraith, David W" sort="Galbraith, David W" uniqKey="Galbraith D" first="David W" last="Galbraith">David W. Galbraith</name><affiliation><nlm:affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>School of Plant Sciences and Bio5 Institute, The University of Arizona, Tucson, AZ, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Wang, Zhaoshan" sort="Wang, Zhaoshan" uniqKey="Wang Z" first="Zhaoshan" last="Wang">Zhaoshan Wang</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation></affiliation></author><author><name sortKey="Sun, Guiling" sort="Sun, Guiling" uniqKey="Sun G" first="Guiling" last="Sun">Guiling Sun</name><affiliation><nlm:affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</nlm:affiliation></affiliation></author></analytic><series><title level="j">DNA research : an international journal for rapid publication of reports on genes and genomes</title><idno type="eISSN">1756-1663</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Sequence (MeSH)</term><term>Cell Nucleus (MeSH)</term><term>DNA, Plant (MeSH)</term><term>Genome, Chloroplast (MeSH)</term><term>Genome, Mitochondrial (MeSH)</term><term>Genome, Plant (MeSH)</term><term>Populus (genetics)</term><term>Sequence Analysis, DNA (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>DNA, Plant</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Cell Nucleus</term><term>Genome, Chloroplast</term><term>Genome, Mitochondrial</term><term>Genome, Plant</term><term>Sequence Analysis, DNA</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Poplar 84K (Populus alba x P. tremula var. glandulosa) is a fast-growing poplar hybrid. Originated in South Korea, this hybrid has been extensively cultivated in northern China. Due to the economic and ecological importance of this hybrid and high transformability, we now report the de novo sequencing and assembly of a male individual of poplar 84K using PacBio and Hi-C technologies. The final reference nuclear genome (747.5 Mb) has a contig N50 size of 1.99 Mb and a scaffold N50 size of 19.6 Mb. Complete chloroplast and mitochondrial genomes were also assembled from the sequencing data. Based on similarities to the genomes of P. alba var. pyramidalis and P. tremula, we were able to identify two subgenomes, representing 356 Mb from P. alba (subgenome A) and 354 Mb from P. tremula var. glandulosa (subgenome G). The phased assembly allowed us to detect the transcriptional bias between the two subgenomes, and we found that the subgenome from P. tremula displayed dominant expression in both 84K and another widely used hybrid, P. tremula x P. alba. This high-quality poplar 84K genome will be a valuable resource for poplar breeding and for molecular biology studies.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">31580414</PMID><DateCompleted><Year>2020</Year><Month>03</Month><Day>26</Day></DateCompleted><DateRevised><Year>2020</Year><Month>03</Month><Day>26</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1756-1663</ISSN><JournalIssue CitedMedium="Internet"><Volume>26</Volume><Issue>5</Issue><PubDate><Year>2019</Year><Month>Oct</Month><Day>01</Day></PubDate></JournalIssue><Title>DNA research : an international journal for rapid publication of reports on genes and genomes</Title><ISOAbbreviation>DNA Res</ISOAbbreviation></Journal><ArticleTitle>The genome of Populus alba x Populus tremula var. glandulosa clone 84K.</ArticleTitle><Pagination><MedlinePgn>423-431</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1093/dnares/dsz020</ELocationID><Abstract><AbstractText>Poplar 84K (Populus alba x P. tremula var. glandulosa) is a fast-growing poplar hybrid. Originated in South Korea, this hybrid has been extensively cultivated in northern China. Due to the economic and ecological importance of this hybrid and high transformability, we now report the de novo sequencing and assembly of a male individual of poplar 84K using PacBio and Hi-C technologies. The final reference nuclear genome (747.5 Mb) has a contig N50 size of 1.99 Mb and a scaffold N50 size of 19.6 Mb. Complete chloroplast and mitochondrial genomes were also assembled from the sequencing data. Based on similarities to the genomes of P. alba var. pyramidalis and P. tremula, we were able to identify two subgenomes, representing 356 Mb from P. alba (subgenome A) and 354 Mb from P. tremula var. glandulosa (subgenome G). The phased assembly allowed us to detect the transcriptional bias between the two subgenomes, and we found that the subgenome from P. tremula displayed dominant expression in both 84K and another widely used hybrid, P. tremula x P. alba. This high-quality poplar 84K genome will be a valuable resource for poplar breeding and for molecular biology studies.</AbstractText><CopyrightInformation>© The Author(s) 2019. Published by Oxford University Press on behalf of Kazusa DNA Research Institute.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Qiu</LastName><ForeName>Deyou</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bai</LastName><ForeName>Shenglong</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ma</LastName><ForeName>Jianchao</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Lisha</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shao</LastName><ForeName>Fenjuan</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Kaikai</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>College of Horticulture, Agricultural University of Hebei, Baoding, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Yanfang</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sun</LastName><ForeName>Ting</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Huang</LastName><ForeName>Jinling</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhou</LastName><ForeName>Yun</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Galbraith</LastName><ForeName>David W</ForeName><Initials>DW</Initials><AffiliationInfo><Affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>School of Plant Sciences and Bio5 Institute, The University of Arizona, Tucson, AZ, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Zhaoshan</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sun</LastName><ForeName>Guiling</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, Kaifeng, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>DNA Res</MedlineTA><NlmUniqueID>9423827</NlmUniqueID><ISSNLinking>1340-2838</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018744">DNA, Plant</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002467" MajorTopicYN="N">Cell Nucleus</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018744" MajorTopicYN="N">DNA, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D054628" MajorTopicYN="Y">Genome, Chloroplast</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D054629" MajorTopicYN="Y">Genome, Mitochondrial</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="Y">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="Y">Sequence Analysis, DNA</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">P. alba
</Keyword><Keyword MajorTopicYN="N">P. tremula
</Keyword><Keyword MajorTopicYN="N">genome sequencing</Keyword><Keyword MajorTopicYN="N">poplar 84K</Keyword><Keyword MajorTopicYN="N">subgenome assignment</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>04</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>09</Month><Day>09</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>10</Month><Day>4</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>3</Month><Day>27</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>10</Month><Day>4</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31580414</ArticleId><ArticleId IdType="pii">5580662</ArticleId><ArticleId IdType="doi">10.1093/dnares/dsz020</ArticleId><ArticleId IdType="pmc">PMC6796506</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11</Citation><ArticleIdList><ArticleId IdType="pubmed">28486635</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2018 Nov 30;46(21):e126</Citation><ArticleIdList><ArticleId IdType="pubmed">30107434</ArticleId></ArticleIdList></Reference><Reference><Citation>Mob DNA. 2015 Jun 02;6:11</Citation><ArticleIdList><ArticleId IdType="pubmed">26045719</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Protoc Bioinformatics. 2004 May;Chapter 4:Unit 4.10</Citation><ArticleIdList><ArticleId IdType="pubmed">18428725</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol Evol. 2011;3:365-71</Citation><ArticleIdList><ArticleId IdType="pubmed">21292629</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2016 Jan 4;44(D1):D81-9</Citation><ArticleIdList><ArticleId IdType="pubmed">26612867</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2002 Nov;14(11):2651-5</Citation><ArticleIdList><ArticleId IdType="pubmed">12417692</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2012 Apr;40(7):e49</Citation><ArticleIdList><ArticleId IdType="pubmed">22217600</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 1983 Jun 3;220(4601):1049-51</Citation><ArticleIdList><ArticleId IdType="pubmed">17754551</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2004;5(2):R12</Citation><ArticleIdList><ArticleId IdType="pubmed">14759262</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2010 Sep;20(9):1297-303</Citation><ArticleIdList><ArticleId IdType="pubmed">20644199</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell Physiol. 2006 Nov;47(11):1582-9</Citation><ArticleIdList><ArticleId IdType="pubmed">17018558</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Plant Sci. 2004 Jan;9(1):49-56</Citation><ArticleIdList><ArticleId IdType="pubmed">14729219</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Commun. 2013;4:2797</Citation><ArticleIdList><ArticleId IdType="pubmed">24256998</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 1999 Jan 15;27(2):573-80</Citation><ArticleIdList><ArticleId IdType="pubmed">9862982</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2015 Oct 1;31(19):3210-2</Citation><ArticleIdList><ArticleId IdType="pubmed">26059717</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2015 Sep 21;16:198</Citation><ArticleIdList><ArticleId IdType="pubmed">26392354</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Biotechnol J. 2010 Apr;8(3):294-307</Citation><ArticleIdList><ArticleId IdType="pubmed">20070872</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Biotechnol. 2015 Mar;33(3):290-5</Citation><ArticleIdList><ArticleId IdType="pubmed">25690850</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2009 Sep;19(9):1639-45</Citation><ArticleIdList><ArticleId IdType="pubmed">19541911</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2017 May;27(5):722-736</Citation><ArticleIdList><ArticleId IdType="pubmed">28298431</ArticleId></ArticleIdList></Reference><Reference><Citation>Tree Physiol. 2016 Sep;36(9):1162-76</Citation><ArticleIdList><ArticleId IdType="pubmed">27259636</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2010 Jan 1;26(1):139-40</Citation><ArticleIdList><ArticleId IdType="pubmed">19910308</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2006 Sep 15;313(5793):1596-604</Citation><ArticleIdList><ArticleId IdType="pubmed">16973872</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2018 Nov 13;115(46):E10970-E10978</Citation><ArticleIdList><ArticleId IdType="pubmed">30373829</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Methods. 2015 Apr;12(4):357-60</Citation><ArticleIdList><ArticleId IdType="pubmed">25751142</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2016 Jan 22;11(1):e0147209</Citation><ArticleIdList><ArticleId IdType="pubmed">26800039</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Biotechnol J. 2019 Feb;17(2):451-460</Citation><ArticleIdList><ArticleId IdType="pubmed">30044051</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2014 Nov 19;9(11):e112963</Citation><ArticleIdList><ArticleId IdType="pubmed">25409509</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Biotechnol. 2013 Dec;31(12):1119-25</Citation><ArticleIdList><ArticleId IdType="pubmed">24185095</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2016 Jul 8;44(W1):W54-7</Citation><ArticleIdList><ArticleId IdType="pubmed">27174935</ArticleId></ArticleIdList></Reference><Reference><Citation>Gigascience. 2017 Sep 1;6(9):1-7</Citation><ArticleIdList><ArticleId IdType="pubmed">28938721</ArticleId></ArticleIdList></Reference><Reference><Citation>Chemosphere. 2013 Jan;90(4):1478-86</Citation><ArticleIdList><ArticleId IdType="pubmed">23062827</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Methods. 2013 Jun;10(6):563-9</Citation><ArticleIdList><ArticleId IdType="pubmed">23644548</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2015 Aug 06;16:157</Citation><ArticleIdList><ArticleId IdType="pubmed">26243257</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Biotechnol J. 2012 Sep;10(7):883-9</Citation><ArticleIdList><ArticleId IdType="pubmed">22672155</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Protoc Bioinformatics. 2018 Jun;62(1):e51</Citation><ArticleIdList><ArticleId IdType="pubmed">29927072</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2013 Nov 15;29(22):2933-5</Citation><ArticleIdList><ArticleId IdType="pubmed">24008419</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Bioinformatics. 2009 Dec 15;10:421</Citation><ArticleIdList><ArticleId IdType="pubmed">20003500</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2016 Oct 1;32(19):3021-3</Citation><ArticleIdList><ArticleId IdType="pubmed">27318204</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2007;35(9):3100-8</Citation><ArticleIdList><ArticleId IdType="pubmed">17452365</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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