The rise and fall of genes: origins and functions of plant pathogen pangenomes.
Identifieur interne : 000238 ( Main/Curation ); précédent : 000237; suivant : 000239The rise and fall of genes: origins and functions of plant pathogen pangenomes.
Auteurs : Thomas Badet [Suisse] ; Daniel Croll [Suisse]Source :
- Current opinion in plant biology [ 1879-0356 ] ; 2020.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Maladies des plantes, Plantes.
- Virulence.
English descriptors
- KwdEn :
- MESH :
- genetics : Plant Diseases, Plants.
- Virulence.
Abstract
Plant pathogens can rapidly overcome resistance of their hosts by mutating key pathogenicity genes encoding for effectors. Pathogen adaptation is fuelled by extensive genetic variability in populations and different strains may not share the same set of genes. Recently, such an intra-specific variation in gene content became formalized as pangenomes distinguishing core genes (i.e. shared) and accessory genes (i.e. lineage or strain-specific). Across pathogens species, key effectors tend to be part of the rapidly evolving accessory genome. Here, we show how the construction and analysis of pathogen pangenomes provide deep insights into the dynamic host adaptation process. We also discuss how pangenomes should ideally be built and how geography, niche and lifestyle likely determine pangenome sizes.
DOI: 10.1016/j.pbi.2020.04.009
PubMed: 32480355
Links toward previous steps (curation, corpus...)
- to stream Main, to step Corpus: Pour aller vers cette notice dans l'étape Curation :000238
Links to Exploration step
pubmed:32480355Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The rise and fall of genes: origins and functions of plant pathogen pangenomes.</title>
<author><name sortKey="Badet, Thomas" sort="Badet, Thomas" uniqKey="Badet T" first="Thomas" last="Badet">Thomas Badet</name>
<affiliation wicri:level="1"><nlm:affiliation>Laboratory of Evolutionary Genetics, Institute of Biology, University of Neuchâtel, Switzerland.</nlm:affiliation>
<country xml:lang="fr">Suisse</country>
<wicri:regionArea>Laboratory of Evolutionary Genetics, Institute of Biology, University of Neuchâtel</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Croll, Daniel" sort="Croll, Daniel" uniqKey="Croll D" first="Daniel" last="Croll">Daniel Croll</name>
<affiliation wicri:level="1"><nlm:affiliation>Laboratory of Evolutionary Genetics, Institute of Biology, University of Neuchâtel, Switzerland. Electronic address: daniel.croll@unine.ch.</nlm:affiliation>
<country xml:lang="fr">Suisse</country>
<wicri:regionArea>Laboratory of Evolutionary Genetics, Institute of Biology, University of Neuchâtel</wicri:regionArea>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2020">2020</date>
<idno type="RBID">pubmed:32480355</idno>
<idno type="pmid">32480355</idno>
<idno type="doi">10.1016/j.pbi.2020.04.009</idno>
<idno type="wicri:Area/Main/Corpus">000238</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000238</idno>
<idno type="wicri:Area/Main/Curation">000238</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000238</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">The rise and fall of genes: origins and functions of plant pathogen pangenomes.</title>
<author><name sortKey="Badet, Thomas" sort="Badet, Thomas" uniqKey="Badet T" first="Thomas" last="Badet">Thomas Badet</name>
<affiliation wicri:level="1"><nlm:affiliation>Laboratory of Evolutionary Genetics, Institute of Biology, University of Neuchâtel, Switzerland.</nlm:affiliation>
<country xml:lang="fr">Suisse</country>
<wicri:regionArea>Laboratory of Evolutionary Genetics, Institute of Biology, University of Neuchâtel</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Croll, Daniel" sort="Croll, Daniel" uniqKey="Croll D" first="Daniel" last="Croll">Daniel Croll</name>
<affiliation wicri:level="1"><nlm:affiliation>Laboratory of Evolutionary Genetics, Institute of Biology, University of Neuchâtel, Switzerland. Electronic address: daniel.croll@unine.ch.</nlm:affiliation>
<country xml:lang="fr">Suisse</country>
<wicri:regionArea>Laboratory of Evolutionary Genetics, Institute of Biology, University of Neuchâtel</wicri:regionArea>
</affiliation>
</author>
</analytic>
<series><title level="j">Current opinion in plant biology</title>
<idno type="eISSN">1879-0356</idno>
<imprint><date when="2020" type="published">2020</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Plant Diseases (genetics)</term>
<term>Plants (genetics)</term>
<term>Virulence (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Maladies des plantes (génétique)</term>
<term>Plantes (génétique)</term>
<term>Virulence (MeSH)</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Plant Diseases</term>
<term>Plants</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Maladies des plantes</term>
<term>Plantes</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Virulence</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Virulence</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Plant pathogens can rapidly overcome resistance of their hosts by mutating key pathogenicity genes encoding for effectors. Pathogen adaptation is fuelled by extensive genetic variability in populations and different strains may not share the same set of genes. Recently, such an intra-specific variation in gene content became formalized as pangenomes distinguishing core genes (i.e. shared) and accessory genes (i.e. lineage or strain-specific). Across pathogens species, key effectors tend to be part of the rapidly evolving accessory genome. Here, we show how the construction and analysis of pathogen pangenomes provide deep insights into the dynamic host adaptation process. We also discuss how pangenomes should ideally be built and how geography, niche and lifestyle likely determine pangenome sizes.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Automated" Owner="NLM"><PMID Version="1">32480355</PMID>
<DateCompleted><Year>2020</Year>
<Month>10</Month>
<Day>08</Day>
</DateCompleted>
<DateRevised><Year>2020</Year>
<Month>10</Month>
<Day>08</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1879-0356</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>56</Volume>
<PubDate><Year>2020</Year>
<Month>08</Month>
</PubDate>
</JournalIssue>
<Title>Current opinion in plant biology</Title>
<ISOAbbreviation>Curr Opin Plant Biol</ISOAbbreviation>
</Journal>
<ArticleTitle>The rise and fall of genes: origins and functions of plant pathogen pangenomes.</ArticleTitle>
<Pagination><MedlinePgn>65-73</MedlinePgn>
</Pagination>
<ELocationID EIdType="pii" ValidYN="Y">S1369-5266(20)30049-2</ELocationID>
<ELocationID EIdType="doi" ValidYN="Y">10.1016/j.pbi.2020.04.009</ELocationID>
<Abstract><AbstractText>Plant pathogens can rapidly overcome resistance of their hosts by mutating key pathogenicity genes encoding for effectors. Pathogen adaptation is fuelled by extensive genetic variability in populations and different strains may not share the same set of genes. Recently, such an intra-specific variation in gene content became formalized as pangenomes distinguishing core genes (i.e. shared) and accessory genes (i.e. lineage or strain-specific). Across pathogens species, key effectors tend to be part of the rapidly evolving accessory genome. Here, we show how the construction and analysis of pathogen pangenomes provide deep insights into the dynamic host adaptation process. We also discuss how pangenomes should ideally be built and how geography, niche and lifestyle likely determine pangenome sizes.</AbstractText>
<CopyrightInformation>Copyright © 2020 The Authors. Published by Elsevier Ltd.. All rights reserved.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Badet</LastName>
<ForeName>Thomas</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>Laboratory of Evolutionary Genetics, Institute of Biology, University of Neuchâtel, Switzerland.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Croll</LastName>
<ForeName>Daniel</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>Laboratory of Evolutionary Genetics, Institute of Biology, University of Neuchâtel, Switzerland. Electronic address: daniel.croll@unine.ch.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
<PublicationType UI="D016454">Review</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2020</Year>
<Month>05</Month>
<Day>29</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Curr Opin Plant Biol</MedlineTA>
<NlmUniqueID>100883395</NlmUniqueID>
<ISSNLinking>1369-5266</ISSNLinking>
</MedlineJournalInfo>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="Y">Plant Diseases</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010944" MajorTopicYN="Y">Plants</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014774" MajorTopicYN="N">Virulence</DescriptorName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year>
<Month>02</Month>
<Day>06</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="revised"><Year>2020</Year>
<Month>04</Month>
<Day>14</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2020</Year>
<Month>04</Month>
<Day>18</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2020</Year>
<Month>6</Month>
<Day>2</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2020</Year>
<Month>10</Month>
<Day>9</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2020</Year>
<Month>6</Month>
<Day>2</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">32480355</ArticleId>
<ArticleId IdType="pii">S1369-5266(20)30049-2</ArticleId>
<ArticleId IdType="doi">10.1016/j.pbi.2020.04.009</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PlantPathoEffV1/Data/Main/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000238 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Curation/biblio.hfd -nk 000238 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Bois |area= PlantPathoEffV1 |flux= Main |étape= Curation |type= RBID |clé= pubmed:32480355 |texte= The rise and fall of genes: origins and functions of plant pathogen pangenomes. }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Curation/RBID.i -Sk "pubmed:32480355" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Curation/biblio.hfd \ | NlmPubMed2Wicri -a PlantPathoEffV1
This area was generated with Dilib version V0.6.38. |