Host adaptation and microbial competition drive Ralstonia solanacearum phylotype I evolution in the Republic of Korea.
Identifieur interne : 000017 ( Main/Corpus ); précédent : 000016; suivant : 000018Host adaptation and microbial competition drive Ralstonia solanacearum phylotype I evolution in the Republic of Korea.
Auteurs : Maxim Prokchorchik ; Ankita Pandey ; Hayoung Moon ; Wanhui Kim ; Hyelim Jeon ; Gayoung Jung ; Jay Jayaraman ; Stephen Poole ; Cécile Segonzac ; Kee Hoon Sohn ; Honour C. MccannSource :
- Microbial genomics [ 2057-5858 ] ; 2020.
Abstract
Bacterial wilt caused by the Ralstonia solanacearum species complex (RSSC) threatens the cultivation of important crops worldwide. We sequenced 30 RSSC phylotype I (R. pseudosolanacearum) strains isolated from pepper (Capsicum annuum) and tomato (Solanum lycopersicum) across the Republic of Korea. These isolates span the diversity of phylotype I, have extensive effector repertoires and are subject to frequent recombination. Recombination hotspots among South Korean phylotype I isolates include multiple predicted contact-dependent inhibition loci, suggesting that microbial competition plays a significant role in Ralstonia evolution. Rapid diversification of secreted effectors presents challenges for the development of disease-resistant plant varieties. We identified potential targets for disease resistance breeding by testing for allele-specific host recognition of T3Es present among South Korean phyloype I isolates. The integration of pathogen population genomics and molecular plant pathology contributes to the development of location-specific disease control and development of plant cultivars with durable resistance to relevant threats.
DOI: 10.1099/mgen.0.000461
PubMed: 33151139
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Host adaptation and microbial competition drive <i>Ralstonia solanacearum</i> phylotype I evolution in the Republic of Korea.</title><author><name sortKey="Prokchorchik, Maxim" sort="Prokchorchik, Maxim" uniqKey="Prokchorchik M" first="Maxim" last="Prokchorchik">Maxim Prokchorchik</name><affiliation><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Pandey, Ankita" sort="Pandey, Ankita" uniqKey="Pandey A" first="Ankita" last="Pandey">Ankita Pandey</name><affiliation><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Moon, Hayoung" sort="Moon, Hayoung" uniqKey="Moon H" first="Hayoung" last="Moon">Hayoung Moon</name><affiliation><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Kim, Wanhui" sort="Kim, Wanhui" uniqKey="Kim W" first="Wanhui" last="Kim">Wanhui Kim</name><affiliation><nlm:affiliation>Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Plant Science, Plant Genome and Breeding Institute, Agricultural Life Science Research Institute, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Jeon, Hyelim" sort="Jeon, Hyelim" uniqKey="Jeon H" first="Hyelim" last="Jeon">Hyelim Jeon</name><affiliation><nlm:affiliation>Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Jung, Gayoung" sort="Jung, Gayoung" uniqKey="Jung G" first="Gayoung" last="Jung">Gayoung Jung</name><affiliation><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Jayaraman, Jay" sort="Jayaraman, Jay" uniqKey="Jayaraman J" first="Jay" last="Jayaraman">Jay Jayaraman</name><affiliation><nlm:affiliation>The New Zealand Institute for Plant and Food Research, Auckland, New Zealand.</nlm:affiliation></affiliation></author><author><name sortKey="Poole, Stephen" sort="Poole, Stephen" uniqKey="Poole S" first="Stephen" last="Poole">Stephen Poole</name><affiliation><nlm:affiliation>Department of Molecular, Cellular and Developmental Biology, University of California Santa Barbara, Santa Barbara, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Segonzac, Cecile" sort="Segonzac, Cecile" uniqKey="Segonzac C" first="Cécile" last="Segonzac">Cécile Segonzac</name><affiliation><nlm:affiliation>Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Plant Science, Plant Genome and Breeding Institute, Agricultural Life Science Research Institute, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Sohn, Kee Hoon" sort="Sohn, Kee Hoon" uniqKey="Sohn K" first="Kee Hoon" last="Sohn">Kee Hoon Sohn</name><affiliation><nlm:affiliation>School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Mccann, Honour C" sort="Mccann, Honour C" uniqKey="Mccann H" first="Honour C" last="Mccann">Honour C. Mccann</name><affiliation><nlm:affiliation>New Zealand Institute for Advanced Study, Massey University Albany, New Zealand.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Max Planck Institute for Developmental Biology, Tübingen, Germany.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2020">2020</date><idno type="RBID">pubmed:33151139</idno><idno type="pmid">33151139</idno><idno type="doi">10.1099/mgen.0.000461</idno><idno type="wicri:Area/Main/Corpus">000017</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000017</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Host adaptation and microbial competition drive <i>Ralstonia solanacearum</i> phylotype I evolution in the Republic of Korea.</title><author><name sortKey="Prokchorchik, Maxim" sort="Prokchorchik, Maxim" uniqKey="Prokchorchik M" first="Maxim" last="Prokchorchik">Maxim Prokchorchik</name><affiliation><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Pandey, Ankita" sort="Pandey, Ankita" uniqKey="Pandey A" first="Ankita" last="Pandey">Ankita Pandey</name><affiliation><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Moon, Hayoung" sort="Moon, Hayoung" uniqKey="Moon H" first="Hayoung" last="Moon">Hayoung Moon</name><affiliation><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Kim, Wanhui" sort="Kim, Wanhui" uniqKey="Kim W" first="Wanhui" last="Kim">Wanhui Kim</name><affiliation><nlm:affiliation>Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Plant Science, Plant Genome and Breeding Institute, Agricultural Life Science Research Institute, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Jeon, Hyelim" sort="Jeon, Hyelim" uniqKey="Jeon H" first="Hyelim" last="Jeon">Hyelim Jeon</name><affiliation><nlm:affiliation>Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Jung, Gayoung" sort="Jung, Gayoung" uniqKey="Jung G" first="Gayoung" last="Jung">Gayoung Jung</name><affiliation><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Jayaraman, Jay" sort="Jayaraman, Jay" uniqKey="Jayaraman J" first="Jay" last="Jayaraman">Jay Jayaraman</name><affiliation><nlm:affiliation>The New Zealand Institute for Plant and Food Research, Auckland, New Zealand.</nlm:affiliation></affiliation></author><author><name sortKey="Poole, Stephen" sort="Poole, Stephen" uniqKey="Poole S" first="Stephen" last="Poole">Stephen Poole</name><affiliation><nlm:affiliation>Department of Molecular, Cellular and Developmental Biology, University of California Santa Barbara, Santa Barbara, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Segonzac, Cecile" sort="Segonzac, Cecile" uniqKey="Segonzac C" first="Cécile" last="Segonzac">Cécile Segonzac</name><affiliation><nlm:affiliation>Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Plant Science, Plant Genome and Breeding Institute, Agricultural Life Science Research Institute, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Sohn, Kee Hoon" sort="Sohn, Kee Hoon" uniqKey="Sohn K" first="Kee Hoon" last="Sohn">Kee Hoon Sohn</name><affiliation><nlm:affiliation>School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Mccann, Honour C" sort="Mccann, Honour C" uniqKey="Mccann H" first="Honour C" last="Mccann">Honour C. Mccann</name><affiliation><nlm:affiliation>New Zealand Institute for Advanced Study, Massey University Albany, New Zealand.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Max Planck Institute for Developmental Biology, Tübingen, Germany.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Microbial genomics</title><idno type="eISSN">2057-5858</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Bacterial wilt caused by the <i>Ralstonia solanacearum</i> species complex (RSSC) threatens the cultivation of important crops worldwide. We sequenced 30 RSSC phylotype I (<i>R. pseudosolanacearum</i>) strains isolated from pepper (<i>Capsicum annuum</i>) and tomato (<i>Solanum lycopersicum</i>) across the Republic of Korea. These isolates span the diversity of phylotype I, have extensive effector repertoires and are subject to frequent recombination. Recombination hotspots among South Korean phylotype I isolates include multiple predicted contact-dependent inhibition loci, suggesting that microbial competition plays a significant role in <i>Ralstonia</i> evolution. Rapid diversification of secreted effectors presents challenges for the development of disease-resistant plant varieties. We identified potential targets for disease resistance breeding by testing for allele-specific host recognition of T3Es present among South Korean phyloype I isolates. The integration of pathogen population genomics and molecular plant pathology contributes to the development of location-specific disease control and development of plant cultivars with durable resistance to relevant threats.</div></front></TEI><pubmed><MedlineCitation Status="Publisher" Owner="NLM"><PMID Version="1">33151139</PMID><DateRevised><Year>2020</Year><Month>11</Month><Day>05</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">2057-5858</ISSN><JournalIssue CitedMedium="Internet"><PubDate><Year>2020</Year><Month>Nov</Month><Day>05</Day></PubDate></JournalIssue><Title>Microbial genomics</Title><ISOAbbreviation>Microb Genom</ISOAbbreviation></Journal><ArticleTitle>Host adaptation and microbial competition drive <i>Ralstonia solanacearum</i> phylotype I evolution in the Republic of Korea.</ArticleTitle><ELocationID EIdType="doi" ValidYN="Y">10.1099/mgen.0.000461</ELocationID><Abstract><AbstractText>Bacterial wilt caused by the <i>Ralstonia solanacearum</i> species complex (RSSC) threatens the cultivation of important crops worldwide. We sequenced 30 RSSC phylotype I (<i>R. pseudosolanacearum</i>) strains isolated from pepper (<i>Capsicum annuum</i>) and tomato (<i>Solanum lycopersicum</i>) across the Republic of Korea. These isolates span the diversity of phylotype I, have extensive effector repertoires and are subject to frequent recombination. Recombination hotspots among South Korean phylotype I isolates include multiple predicted contact-dependent inhibition loci, suggesting that microbial competition plays a significant role in <i>Ralstonia</i> evolution. Rapid diversification of secreted effectors presents challenges for the development of disease-resistant plant varieties. We identified potential targets for disease resistance breeding by testing for allele-specific host recognition of T3Es present among South Korean phyloype I isolates. The integration of pathogen population genomics and molecular plant pathology contributes to the development of location-specific disease control and development of plant cultivars with durable resistance to relevant threats.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Prokchorchik</LastName><ForeName>Maxim</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pandey</LastName><ForeName>Ankita</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Moon</LastName><ForeName>Hayoung</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Wanhui</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Plant Science, Plant Genome and Breeding Institute, Agricultural Life Science Research Institute, Seoul National University, Seoul 08826, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jeon</LastName><ForeName>Hyelim</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826, Republic of Korea.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jung</LastName><ForeName>Gayoung</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jayaraman</LastName><ForeName>Jay</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>The New Zealand Institute for Plant and Food Research, Auckland, New Zealand.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Poole</LastName><ForeName>Stephen</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Molecular, Cellular and Developmental Biology, University of California Santa Barbara, Santa Barbara, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Segonzac</LastName><ForeName>Cécile</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826, Republic of Korea.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Plant Science, Plant Genome and Breeding Institute, Agricultural Life Science Research Institute, Seoul National University, Seoul 08826, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sohn</LastName><ForeName>Kee Hoon</ForeName><Initials>KH</Initials><AffiliationInfo><Affiliation>School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>McCann</LastName><ForeName>Honour C</ForeName><Initials>HC</Initials><AffiliationInfo><Affiliation>New Zealand Institute for Advanced Study, Massey University Albany, New Zealand.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Max Planck Institute for Developmental Biology, Tübingen, Germany.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>11</Month><Day>05</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Microb Genom</MedlineTA><NlmUniqueID>101671820</NlmUniqueID><ISSNLinking>2057-5858</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Ralstonia solanacearum</Keyword><Keyword MajorTopicYN="N">microbial competition</Keyword><Keyword MajorTopicYN="N">pathogen evolution</Keyword><Keyword MajorTopicYN="N">plant–microbe interactions</Keyword><Keyword MajorTopicYN="N">population genomics</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>11</Month><Day>5</Day><Hour>12</Hour><Minute>11</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>11</Month><Day>6</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>11</Month><Day>6</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>aheadofprint</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">33151139</ArticleId><ArticleId IdType="doi">10.1099/mgen.0.000461</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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