Comparative genomics enabled the isolation of the R3a late blight resistance gene in potato.
Identifieur interne : 002213 ( Main/Exploration ); précédent : 002212; suivant : 002214Comparative genomics enabled the isolation of the R3a late blight resistance gene in potato.
Auteurs : Sanwen Huang [Pays-Bas] ; Edwin A G. Van Der Vossen ; Hanhui Kuang ; Vivianne G A A. Vleeshouwers ; Ningwen Zhang ; Theo J A. Borm ; Herman J. Van Eck ; Barbara Baker ; Evert Jacobsen ; Richard G F. VisserSource :
- The Plant journal : for cell and molecular biology [ 0960-7412 ] ; 2005.
Descripteurs français
- KwdFr :
- Données de séquences moléculaires (MeSH), Expression des gènes (physiologie), Feuilles de plante (microbiologie), Génomique (MeSH), Immunité innée (génétique), Lycopersicon esculentum (génétique), Lycopersicon esculentum (métabolisme), Maladies des plantes (microbiologie), Marqueurs génétiques (MeSH), Phytophthora (physiologie), Protéines végétales (génétique), Protéines végétales (métabolisme), Similitude de séquences d'acides aminés (MeSH), Solanum tuberosum (génétique), Solanum tuberosum (métabolisme), Séquence d'acides aminés (MeSH), Évolution moléculaire (MeSH).
- MESH :
- génétique : Immunité innée, Lycopersicon esculentum, Protéines végétales, Solanum tuberosum.
- microbiologie : Feuilles de plante, Maladies des plantes.
- métabolisme : Lycopersicon esculentum, Protéines végétales, Solanum tuberosum.
- physiologie : Expression des gènes, Phytophthora.
- Données de séquences moléculaires, Génomique, Marqueurs génétiques, Similitude de séquences d'acides aminés, Séquence d'acides aminés, Évolution moléculaire.
English descriptors
- KwdEn :
- Amino Acid Sequence (MeSH), Evolution, Molecular (MeSH), Gene Expression (physiology), Genetic Markers (MeSH), Genomics (MeSH), Immunity, Innate (genetics), Lycopersicon esculentum (genetics), Lycopersicon esculentum (metabolism), Molecular Sequence Data (MeSH), Phytophthora (physiology), Plant Diseases (microbiology), Plant Leaves (microbiology), Plant Proteins (genetics), Plant Proteins (metabolism), Sequence Homology, Amino Acid (MeSH), Solanum tuberosum (genetics), Solanum tuberosum (metabolism).
- MESH :
- chemical , genetics : Plant Proteins.
- chemical , metabolism : Plant Proteins.
- chemical : Genetic Markers.
- genetics : Immunity, Innate, Lycopersicon esculentum, Solanum tuberosum.
- metabolism : Lycopersicon esculentum, Solanum tuberosum.
- microbiology : Plant Diseases, Plant Leaves.
- physiology : Gene Expression, Phytophthora.
- Amino Acid Sequence, Evolution, Molecular, Genomics, Molecular Sequence Data, Sequence Homology, Amino Acid.
Abstract
Comparative genomics provides a tool to utilize the exponentially increasing sequence information from model plants to clone agronomically important genes from less studied crop species. Plant disease resistance (R) loci frequently lack synteny between related species of cereals and crucifers but appear to be positionally well conserved in the Solanaceae. In this report, we adopted a local RGA approach using genomic information from the model Solanaceous plant tomato to isolate R3a, a potato gene that confers race-specific resistance to the late blight pathogen Phytophthora infestans. R3a is a member of the R3 complex locus on chromosome 11. Comparative analyses of the R3 complex locus with the corresponding I2 complex locus in tomato suggest that this is an ancient locus involved in plant innate immunity against oomycete and fungal pathogens. However, the R3 complex locus has evolved after divergence from tomato and the locus has experienced a significant expansion in potato without disruption of the flanking colinearity. This expansion has resulted in an increase in the number of R genes and in functional diversification, which has probably been driven by the co-evolutionary history between P. infestans and its host potato. Constitutive expression was observed for the R3a gene, as well as some of its paralogues whose functions remain unknown.
DOI: 10.1111/j.1365-313X.2005.02365.x
PubMed: 15807786
Affiliations:
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Van Der Vossen</name></author><author><name sortKey="Kuang, Hanhui" sort="Kuang, Hanhui" uniqKey="Kuang H" first="Hanhui" last="Kuang">Hanhui Kuang</name></author><author><name sortKey="Vleeshouwers, Vivianne G A A" sort="Vleeshouwers, Vivianne G A A" uniqKey="Vleeshouwers V" first="Vivianne G A A" last="Vleeshouwers">Vivianne G A A. Vleeshouwers</name></author><author><name sortKey="Zhang, Ningwen" sort="Zhang, Ningwen" uniqKey="Zhang N" first="Ningwen" last="Zhang">Ningwen Zhang</name></author><author><name sortKey="Borm, Theo J A" sort="Borm, Theo J A" uniqKey="Borm T" first="Theo J A" last="Borm">Theo J A. Borm</name></author><author><name sortKey="Van Eck, Herman J" sort="Van Eck, Herman J" uniqKey="Van Eck H" first="Herman J" last="Van Eck">Herman J. 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Visser</name></author></analytic><series><title level="j">The Plant journal : for cell and molecular biology</title><idno type="ISSN">0960-7412</idno><imprint><date when="2005" type="published">2005</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence (MeSH)</term><term>Evolution, Molecular (MeSH)</term><term>Gene Expression (physiology)</term><term>Genetic Markers (MeSH)</term><term>Genomics (MeSH)</term><term>Immunity, Innate (genetics)</term><term>Lycopersicon esculentum (genetics)</term><term>Lycopersicon esculentum (metabolism)</term><term>Molecular Sequence Data (MeSH)</term><term>Phytophthora (physiology)</term><term>Plant Diseases (microbiology)</term><term>Plant Leaves (microbiology)</term><term>Plant Proteins (genetics)</term><term>Plant Proteins (metabolism)</term><term>Sequence Homology, Amino Acid (MeSH)</term><term>Solanum tuberosum (genetics)</term><term>Solanum tuberosum (metabolism)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Données de séquences moléculaires (MeSH)</term><term>Expression des gènes (physiologie)</term><term>Feuilles de plante (microbiologie)</term><term>Génomique (MeSH)</term><term>Immunité innée (génétique)</term><term>Lycopersicon esculentum (génétique)</term><term>Lycopersicon esculentum (métabolisme)</term><term>Maladies des plantes (microbiologie)</term><term>Marqueurs génétiques (MeSH)</term><term>Phytophthora (physiologie)</term><term>Protéines végétales (génétique)</term><term>Protéines végétales (métabolisme)</term><term>Similitude de séquences d'acides aminés (MeSH)</term><term>Solanum tuberosum (génétique)</term><term>Solanum tuberosum (métabolisme)</term><term>Séquence d'acides aminés (MeSH)</term><term>Évolution moléculaire (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Plant Proteins</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Genetic Markers</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Immunity, Innate</term><term>Lycopersicon esculentum</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Immunité innée</term><term>Lycopersicon esculentum</term><term>Protéines végétales</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Lycopersicon esculentum</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Feuilles de plante</term><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Plant Leaves</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Lycopersicon esculentum</term><term>Protéines végétales</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Expression des gènes</term><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Gene Expression</term><term>Phytophthora</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term><term>Evolution, Molecular</term><term>Genomics</term><term>Molecular Sequence Data</term><term>Sequence Homology, Amino Acid</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Données de séquences moléculaires</term><term>Génomique</term><term>Marqueurs génétiques</term><term>Similitude de séquences d'acides aminés</term><term>Séquence d'acides aminés</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Comparative genomics provides a tool to utilize the exponentially increasing sequence information from model plants to clone agronomically important genes from less studied crop species. Plant disease resistance (R) loci frequently lack synteny between related species of cereals and crucifers but appear to be positionally well conserved in the Solanaceae. In this report, we adopted a local RGA approach using genomic information from the model Solanaceous plant tomato to isolate R3a, a potato gene that confers race-specific resistance to the late blight pathogen Phytophthora infestans. R3a is a member of the R3 complex locus on chromosome 11. Comparative analyses of the R3 complex locus with the corresponding I2 complex locus in tomato suggest that this is an ancient locus involved in plant innate immunity against oomycete and fungal pathogens. However, the R3 complex locus has evolved after divergence from tomato and the locus has experienced a significant expansion in potato without disruption of the flanking colinearity. This expansion has resulted in an increase in the number of R genes and in functional diversification, which has probably been driven by the co-evolutionary history between P. infestans and its host potato. Constitutive expression was observed for the R3a gene, as well as some of its paralogues whose functions remain unknown.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">15807786</PMID><DateCompleted><Year>2005</Year><Month>08</Month><Day>08</Day></DateCompleted><DateRevised><Year>2008</Year><Month>11</Month><Day>21</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0960-7412</ISSN><JournalIssue CitedMedium="Print"><Volume>42</Volume><Issue>2</Issue><PubDate><Year>2005</Year><Month>Apr</Month></PubDate></JournalIssue><Title>The Plant journal : for cell and molecular biology</Title><ISOAbbreviation>Plant J</ISOAbbreviation></Journal><ArticleTitle>Comparative genomics enabled the isolation of the R3a late blight resistance gene in potato.</ArticleTitle><Pagination><MedlinePgn>251-61</MedlinePgn></Pagination><Abstract><AbstractText>Comparative genomics provides a tool to utilize the exponentially increasing sequence information from model plants to clone agronomically important genes from less studied crop species. Plant disease resistance (R) loci frequently lack synteny between related species of cereals and crucifers but appear to be positionally well conserved in the Solanaceae. In this report, we adopted a local RGA approach using genomic information from the model Solanaceous plant tomato to isolate R3a, a potato gene that confers race-specific resistance to the late blight pathogen Phytophthora infestans. R3a is a member of the R3 complex locus on chromosome 11. Comparative analyses of the R3 complex locus with the corresponding I2 complex locus in tomato suggest that this is an ancient locus involved in plant innate immunity against oomycete and fungal pathogens. However, the R3 complex locus has evolved after divergence from tomato and the locus has experienced a significant expansion in potato without disruption of the flanking colinearity. This expansion has resulted in an increase in the number of R genes and in functional diversification, which has probably been driven by the co-evolutionary history between P. infestans and its host potato. Constitutive expression was observed for the R3a gene, as well as some of its paralogues whose functions remain unknown.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Huang</LastName><ForeName>Sanwen</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Laboratory of Plant Breeding, Department of Plant Sciences, Graduate School Experimental Plant Sciences, Wageningen University, Binnenhaven 5, 6709 PD Wageningen, The Netherlands.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>van der Vossen</LastName><ForeName>Edwin A G</ForeName><Initials>EA</Initials></Author><Author ValidYN="Y"><LastName>Kuang</LastName><ForeName>Hanhui</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Vleeshouwers</LastName><ForeName>Vivianne G A A</ForeName><Initials>VG</Initials></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Ningwen</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Borm</LastName><ForeName>Theo J A</ForeName><Initials>TJ</Initials></Author><Author ValidYN="Y"><LastName>van Eck</LastName><ForeName>Herman J</ForeName><Initials>HJ</Initials></Author><Author ValidYN="Y"><LastName>Baker</LastName><ForeName>Barbara</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Jacobsen</LastName><ForeName>Evert</ForeName><Initials>E</Initials></Author><Author ValidYN="Y"><LastName>Visser</LastName><ForeName>Richard G F</ForeName><Initials>RG</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D003160">Comparative Study</PublicationType><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Plant J</MedlineTA><NlmUniqueID>9207397</NlmUniqueID><ISSNLinking>0960-7412</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005819">Genetic Markers</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="N">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015870" MajorTopicYN="N">Gene Expression</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005819" MajorTopicYN="N">Genetic Markers</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D023281" MajorTopicYN="Y">Genomics</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007113" MajorTopicYN="N">Immunity, Innate</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018551" MajorTopicYN="N">Lycopersicon esculentum</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018515" MajorTopicYN="N">Plant Leaves</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017386" MajorTopicYN="N">Sequence Homology, Amino Acid</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011198" MajorTopicYN="N">Solanum tuberosum</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2005</Year><Month>4</Month><Day>6</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2005</Year><Month>8</Month><Day>9</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2005</Year><Month>4</Month><Day>6</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">15807786</ArticleId><ArticleId IdType="pii">TPJ2365</ArticleId><ArticleId IdType="doi">10.1111/j.1365-313X.2005.02365.x</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Pays-Bas</li></country><region><li>Gueldre (province)</li></region><settlement><li>Wageningue</li></settlement><orgName><li>Université de Wageningue</li></orgName></list><tree><noCountry><name sortKey="Baker, Barbara" sort="Baker, Barbara" uniqKey="Baker B" first="Barbara" last="Baker">Barbara Baker</name><name sortKey="Borm, Theo J A" sort="Borm, Theo J A" uniqKey="Borm T" first="Theo J A" last="Borm">Theo J A. Borm</name><name sortKey="Jacobsen, Evert" sort="Jacobsen, Evert" uniqKey="Jacobsen E" first="Evert" last="Jacobsen">Evert Jacobsen</name><name sortKey="Kuang, Hanhui" sort="Kuang, Hanhui" uniqKey="Kuang H" first="Hanhui" last="Kuang">Hanhui Kuang</name><name sortKey="Van Der Vossen, Edwin A G" sort="Van Der Vossen, Edwin A G" uniqKey="Van Der Vossen E" first="Edwin A G" last="Van Der Vossen">Edwin A G. Van Der Vossen</name><name sortKey="Van Eck, Herman J" sort="Van Eck, Herman J" uniqKey="Van Eck H" first="Herman J" last="Van Eck">Herman J. Van Eck</name><name sortKey="Visser, Richard G F" sort="Visser, Richard G F" uniqKey="Visser R" first="Richard G F" last="Visser">Richard G F. Visser</name><name sortKey="Vleeshouwers, Vivianne G A A" sort="Vleeshouwers, Vivianne G A A" uniqKey="Vleeshouwers V" first="Vivianne G A A" last="Vleeshouwers">Vivianne G A A. Vleeshouwers</name><name sortKey="Zhang, Ningwen" sort="Zhang, Ningwen" uniqKey="Zhang N" first="Ningwen" last="Zhang">Ningwen Zhang</name></noCountry><country name="Pays-Bas"><region name="Gueldre (province)"><name sortKey="Huang, Sanwen" sort="Huang, Sanwen" uniqKey="Huang S" first="Sanwen" last="Huang">Sanwen Huang</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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