PhytophthoraV1, Main, Exploration, bibRecord, 001A94

Identification and characterization of differentially expressed genes in the resistance reaction in taro infected with Phytophthora colocasiae.

Identifieur interne : 001A94 ( Main/Exploration ); précédent : 001A93; suivant : 001A95

Identification and characterization of differentially expressed genes in the resistance reaction in taro infected with Phytophthora colocasiae.

Auteurs : Kamal Sharma [Inde] ; Ajay Kumar Mishra ; Raj Shekhar Misra

Source :

Molecular biology reports [ 1573-4978 ] ; 2009.

RBID : pubmed:18622758

Descripteurs français

English descriptors

KwdEn :
- Base Sequence (MeSH), Colocasia (genetics), Colocasia (immunology), Colocasia (parasitology), Expressed Sequence Tags (MeSH), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (immunology), Immunity (genetics), Molecular Sequence Data (MeSH), Phytophthora (immunology), Plant Diseases (genetics), Plant Diseases (immunology), Transcription Factors (genetics), Up-Regulation (MeSH).
MESH :
- chemical , genetics : Transcription Factors.
- genetics : Colocasia, Immunity, Plant Diseases.
- immunology : Colocasia, Gene Expression Regulation, Plant, Phytophthora, Plant Diseases.
- parasitology : Colocasia.
- Base Sequence, Expressed Sequence Tags, Gene Expression Profiling, Molecular Sequence Data, Up-Regulation.

Abstract

Leaf blight disease caused by Phytophthora colocasiae represents a major constraint to the growth and yield of taro (Colocasia esculenta L.). Ongoing research on model plant systems has revealed that defense responses are activated via signaling pathways mediated by endogenous signaling molecule such as salicylic acid, jasmonic acid, and ethylene. Activation of plant defenses is associated with changes in the expression of large number of genes. To gain a better understanding of defense responses, virulent race of P. colocasiae was used to inoculate the taro cultivar UL-56 (compatible) and its nearly isogenic line Muktakeshi (incompatible). We have employed suppressive subtractive hybridization (SSH), cDNA libraries, Northern blot analysis, high throughput DNA sequencing, and bioinformatics to identify the defense-related genes in taro induced by P. colocasiae infection. Two putative resistance genes and a transcription factor were identified among the upregulated sequences. The expression of several candidate genes including lipid transfer proteins (LTPs), and other pathogenesis-related genes were evaluated following 8-48 h of appearance of symptom in compatible and incompatible interactions. Results confirmed the higher overall expression of these genes in Muktakeshi (resistant) compared to UL-56 (susceptible). This study constitutes the first attempt to characterize the taro differential transcriptome associated with host-pathogen interactions from different genotypes. All the generated ESTs have been submitted to GenBank for further functional studies.

DOI: 10.1007/s11033-008-9311-7
PubMed: 18622758

Affiliations:

Inde

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<term>Colocasia (parasitology)</term>
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<term>Gene Expression Regulation, Plant (immunology)</term>
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<term>Plant Diseases (genetics)</term>
<term>Plant Diseases (immunology)</term>
<term>Transcription Factors (genetics)</term>
<term>Up-Regulation (MeSH)</term>
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<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (MeSH)</term>
<term>Colocasia (génétique)</term>
<term>Colocasia (immunologie)</term>
<term>Colocasia (parasitologie)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Facteurs de transcription (génétique)</term>
<term>Immunité (génétique)</term>
<term>Maladies des plantes (génétique)</term>
<term>Maladies des plantes (immunologie)</term>
<term>Phytophthora (immunologie)</term>
<term>Régulation de l'expression des gènes végétaux (immunologie)</term>
<term>Régulation positive (MeSH)</term>
<term>Séquence nucléotidique (MeSH)</term>
<term>Étiquettes de séquences exprimées (MeSH)</term>
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<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Transcription Factors</term>
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<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Colocasia</term>
<term>Immunity</term>
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<term>Maladies des plantes</term>
<term>Phytophthora</term>
<term>Régulation de l'expression des gènes végétaux</term>
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<front><div type="abstract" xml:lang="en">Leaf blight disease caused by Phytophthora colocasiae represents a major constraint to the growth and yield of taro (Colocasia esculenta L.). Ongoing research on model plant systems has revealed that defense responses are activated via signaling pathways mediated by endogenous signaling molecule such as salicylic acid, jasmonic acid, and ethylene. Activation of plant defenses is associated with changes in the expression of large number of genes. To gain a better understanding of defense responses, virulent race of P. colocasiae was used to inoculate the taro cultivar UL-56 (compatible) and its nearly isogenic line Muktakeshi (incompatible). We have employed suppressive subtractive hybridization (SSH), cDNA libraries, Northern blot analysis, high throughput DNA sequencing, and bioinformatics to identify the defense-related genes in taro induced by P. colocasiae infection. Two putative resistance genes and a transcription factor were identified among the upregulated sequences. The expression of several candidate genes including lipid transfer proteins (LTPs), and other pathogenesis-related genes were evaluated following 8-48 h of appearance of symptom in compatible and incompatible interactions. Results confirmed the higher overall expression of these genes in Muktakeshi (resistant) compared to UL-56 (susceptible). This study constitutes the first attempt to characterize the taro differential transcriptome associated with host-pathogen interactions from different genotypes. All the generated ESTs have been submitted to GenBank for further functional studies.</div>
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Identification and characterization of differentially expressed genes in the resistance reaction in taro infected with Phytophthora colocasiae.

Identification and characterization of differentially expressed genes in the resistance reaction in taro infected with Phytophthora colocasiae.

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