Genetic composition of interspecific potato somatic hybrids and autofused 4x plants evaluated by DArT and cytoplasmic DNA markers.
Identifieur interne : 000C29 ( Main/Exploration ); précédent : 000C28; suivant : 000C30Genetic composition of interspecific potato somatic hybrids and autofused 4x plants evaluated by DArT and cytoplasmic DNA markers.
Auteurs : Paulina Smyda-Dajmund [Pologne] ; Jadwiga Liwka [Pologne] ; Iwona Wasilewicz-Flis [Pologne] ; Henryka Jakuczun [Pologne] ; Ewa Zimnoch-Guzowska [Pologne]Source :
- Plant cell reports [ 1432-203X ] ; 2016.
Descripteurs français
- KwdFr :
- ADN des chloroplastes (génétique), ADN des plantes (génétique), ADN mitochondrial (génétique), Hybridation génétique (génétique), Marqueurs génétiques (génétique), Réaction de polymérisation en chaine multiplex (MeSH), Résistance à la maladie (génétique), Solanum tuberosum (génétique), Séquençage par oligonucléotides en batterie (méthodes).
- MESH :
English descriptors
- KwdEn :
- DNA, Chloroplast (genetics), DNA, Mitochondrial (genetics), DNA, Plant (genetics), Disease Resistance (genetics), Genetic Markers (genetics), Hybridization, Genetic (genetics), Multiplex Polymerase Chain Reaction (MeSH), Oligonucleotide Array Sequence Analysis (methods), Solanum tuberosum (genetics).
- MESH :
- chemical , genetics : DNA, Chloroplast, DNA, Mitochondrial, DNA, Plant, Genetic Markers.
- genetics : Disease Resistance, Hybridization, Genetic, Solanum tuberosum.
- methods : Oligonucleotide Array Sequence Analysis.
- Multiplex Polymerase Chain Reaction.
Abstract
KEY MESSAGE
Using DArT analysis, we demonstrated that all Solanum × michoacanum (+) S. tuberosum somatic hybrids contained all parental chromosomes. However, from 13.9 to 29.6 % of the markers from both parents were lost in the hybrids. Somatic hybrids are an interesting material for research of nucleus-cytoplasm interaction and sources of new nuclear and cytoplasmic combinations. Analyses of genomes of somatic hybrids are essential for studies on genome compatibility between species, its evolution and are important for their efficient exploitation. Diversity array technology (DArT) permits analysis of the composition of nuclear DNA of somatic hybrids. The nuclear genome compositions of 97 Solanum × michoacanum (+) S. tuberosum [mch (+) tbr] somatic hybrids from five fusion combinations and 11 autofused 4x mch were analyzed for the first time based on DArT markers. Out of 5358 DArT markers generated in a single assay, greater than 2000 markers were polymorphic between parents, of which more than 1500 have a known chromosomal location on potato genetic or physical map. DArT markers were distributed along the entire length of 12 chromosomes. We noticed elimination of markers of wild and tbr fusion components. The nuclear genome of individual somatic hybrids was diversified. Mch is a source of resistance to Phytophthora infestans. From 97 mch (+) tbr somatic hybrids, two hybrids and all 11 autofused 4x mch were resistant to P. infestans. The analysis of the structure of particular hybrids' chromosomes indicated the presence of markers from both parental genomes as well as missing markers spread along the full length of the chromosome. Markers specific to chloroplast DNA and mitochondrial DNA were used for analysis of changes within the organellar genomes of somatic hybrids. Random and non-random segregations of organellar DNA were noted.
DOI: 10.1007/s00299-016-1966-2
PubMed: 26993327
PubMed Central: PMC4869754
Affiliations:
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National Research Institute, Młochów Research Center, Platanowa 19, 05-831, Młochów, Poland.</nlm:affiliation><country xml:lang="fr">Pologne</country><wicri:regionArea>Plant Breeding and Acclimatization Institute - National Research Institute, Młochów Research Center, Platanowa 19, 05-831, Młochów</wicri:regionArea><wicri:noRegion>Młochów</wicri:noRegion></affiliation></author><author><name sortKey="Jakuczun, Henryka" sort="Jakuczun, Henryka" uniqKey="Jakuczun H" first="Henryka" last="Jakuczun">Henryka Jakuczun</name><affiliation wicri:level="1"><nlm:affiliation>Plant Breeding and Acclimatization Institute - National Research Institute, Młochów Research Center, Platanowa 19, 05-831, Młochów, Poland.</nlm:affiliation><country xml:lang="fr">Pologne</country><wicri:regionArea>Plant Breeding and Acclimatization Institute - National Research Institute, Młochów Research Center, Platanowa 19, 05-831, Młochów</wicri:regionArea><wicri:noRegion>Młochów</wicri:noRegion></affiliation></author><author><name sortKey="Zimnoch Guzowska, Ewa" sort="Zimnoch Guzowska, Ewa" uniqKey="Zimnoch Guzowska E" first="Ewa" last="Zimnoch-Guzowska">Ewa Zimnoch-Guzowska</name><affiliation wicri:level="1"><nlm:affiliation>Plant Breeding and Acclimatization Institute - National Research Institute, Młochów Research Center, Platanowa 19, 05-831, Młochów, Poland.</nlm:affiliation><country xml:lang="fr">Pologne</country><wicri:regionArea>Plant Breeding and Acclimatization Institute - National Research Institute, Młochów Research Center, Platanowa 19, 05-831, Młochów</wicri:regionArea><wicri:noRegion>Młochów</wicri:noRegion></affiliation></author></analytic><series><title level="j">Plant cell reports</title><idno type="eISSN">1432-203X</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>DNA, Chloroplast (genetics)</term><term>DNA, Mitochondrial (genetics)</term><term>DNA, Plant (genetics)</term><term>Disease Resistance (genetics)</term><term>Genetic Markers (genetics)</term><term>Hybridization, Genetic (genetics)</term><term>Multiplex Polymerase Chain Reaction (MeSH)</term><term>Oligonucleotide Array Sequence Analysis (methods)</term><term>Solanum tuberosum (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN des chloroplastes (génétique)</term><term>ADN des plantes (génétique)</term><term>ADN mitochondrial (génétique)</term><term>Hybridation génétique (génétique)</term><term>Marqueurs génétiques (génétique)</term><term>Réaction de polymérisation en chaine multiplex (MeSH)</term><term>Résistance à la maladie (génétique)</term><term>Solanum tuberosum (génétique)</term><term>Séquençage par oligonucléotides en batterie (méthodes)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Chloroplast</term><term>DNA, Mitochondrial</term><term>DNA, Plant</term><term>Genetic Markers</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Disease Resistance</term><term>Hybridization, Genetic</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN des chloroplastes</term><term>ADN des plantes</term><term>ADN mitochondrial</term><term>Hybridation génétique</term><term>Marqueurs génétiques</term><term>Résistance à la maladie</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Oligonucleotide Array Sequence Analysis</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Séquençage par oligonucléotides en batterie</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Multiplex Polymerase Chain Reaction</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Réaction de polymérisation en chaine multiplex</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>KEY MESSAGE</b></p><p>Using DArT analysis, we demonstrated that all Solanum × michoacanum (+) S. tuberosum somatic hybrids contained all parental chromosomes. However, from 13.9 to 29.6 % of the markers from both parents were lost in the hybrids. Somatic hybrids are an interesting material for research of nucleus-cytoplasm interaction and sources of new nuclear and cytoplasmic combinations. Analyses of genomes of somatic hybrids are essential for studies on genome compatibility between species, its evolution and are important for their efficient exploitation. Diversity array technology (DArT) permits analysis of the composition of nuclear DNA of somatic hybrids. The nuclear genome compositions of 97 Solanum × michoacanum (+) S. tuberosum [mch (+) tbr] somatic hybrids from five fusion combinations and 11 autofused 4x mch were analyzed for the first time based on DArT markers. Out of 5358 DArT markers generated in a single assay, greater than 2000 markers were polymorphic between parents, of which more than 1500 have a known chromosomal location on potato genetic or physical map. DArT markers were distributed along the entire length of 12 chromosomes. We noticed elimination of markers of wild and tbr fusion components. The nuclear genome of individual somatic hybrids was diversified. Mch is a source of resistance to Phytophthora infestans. From 97 mch (+) tbr somatic hybrids, two hybrids and all 11 autofused 4x mch were resistant to P. infestans. The analysis of the structure of particular hybrids' chromosomes indicated the presence of markers from both parental genomes as well as missing markers spread along the full length of the chromosome. Markers specific to chloroplast DNA and mitochondrial DNA were used for analysis of changes within the organellar genomes of somatic hybrids. Random and non-random segregations of organellar DNA were noted.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26993327</PMID><DateCompleted><Year>2017</Year><Month>03</Month><Day>06</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-203X</ISSN><JournalIssue CitedMedium="Internet"><Volume>35</Volume><Issue>6</Issue><PubDate><Year>2016</Year><Month>Jun</Month></PubDate></JournalIssue><Title>Plant cell reports</Title><ISOAbbreviation>Plant Cell Rep</ISOAbbreviation></Journal><ArticleTitle>Genetic composition of interspecific potato somatic hybrids and autofused 4x plants evaluated by DArT and cytoplasmic DNA markers.</ArticleTitle><Pagination><MedlinePgn>1345-58</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00299-016-1966-2</ELocationID><Abstract><AbstractText Label="KEY MESSAGE" NlmCategory="CONCLUSIONS">Using DArT analysis, we demonstrated that all Solanum × michoacanum (+) S. tuberosum somatic hybrids contained all parental chromosomes. However, from 13.9 to 29.6 % of the markers from both parents were lost in the hybrids. Somatic hybrids are an interesting material for research of nucleus-cytoplasm interaction and sources of new nuclear and cytoplasmic combinations. Analyses of genomes of somatic hybrids are essential for studies on genome compatibility between species, its evolution and are important for their efficient exploitation. Diversity array technology (DArT) permits analysis of the composition of nuclear DNA of somatic hybrids. The nuclear genome compositions of 97 Solanum × michoacanum (+) S. tuberosum [mch (+) tbr] somatic hybrids from five fusion combinations and 11 autofused 4x mch were analyzed for the first time based on DArT markers. Out of 5358 DArT markers generated in a single assay, greater than 2000 markers were polymorphic between parents, of which more than 1500 have a known chromosomal location on potato genetic or physical map. DArT markers were distributed along the entire length of 12 chromosomes. We noticed elimination of markers of wild and tbr fusion components. The nuclear genome of individual somatic hybrids was diversified. Mch is a source of resistance to Phytophthora infestans. From 97 mch (+) tbr somatic hybrids, two hybrids and all 11 autofused 4x mch were resistant to P. infestans. The analysis of the structure of particular hybrids' chromosomes indicated the presence of markers from both parental genomes as well as missing markers spread along the full length of the chromosome. Markers specific to chloroplast DNA and mitochondrial DNA were used for analysis of changes within the organellar genomes of somatic hybrids. Random and non-random segregations of organellar DNA were noted.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Smyda-Dajmund</LastName><ForeName>Paulina</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Plant Breeding and Acclimatization Institute - National Research Institute, Młochów Research Center, Platanowa 19, 05-831, Młochów, Poland. p.smyda@ihar.edu.pl.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Śliwka</LastName><ForeName>Jadwiga</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Plant Breeding and Acclimatization Institute - National Research Institute, Młochów Research Center, Platanowa 19, 05-831, Młochów, Poland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wasilewicz-Flis</LastName><ForeName>Iwona</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Plant Breeding and Acclimatization Institute - National Research Institute, Młochów Research Center, Platanowa 19, 05-831, Młochów, Poland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jakuczun</LastName><ForeName>Henryka</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Plant Breeding and Acclimatization Institute - National Research Institute, Młochów Research Center, Platanowa 19, 05-831, Młochów, Poland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zimnoch-Guzowska</LastName><ForeName>Ewa</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Plant Breeding and Acclimatization Institute - National Research Institute, Młochów Research Center, Platanowa 19, 05-831, Młochów, Poland.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>03</Month><Day>18</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Plant Cell Rep</MedlineTA><NlmUniqueID>9880970</NlmUniqueID><ISSNLinking>0721-7714</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018742">DNA, Chloroplast</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004272">DNA, Mitochondrial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018744">DNA, Plant</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005819">Genetic Markers</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D018742" MajorTopicYN="N">DNA, Chloroplast</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004272" MajorTopicYN="N">DNA, Mitochondrial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018744" MajorTopicYN="N">DNA, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005819" MajorTopicYN="N">Genetic Markers</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006824" MajorTopicYN="N">Hybridization, Genetic</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D060885" MajorTopicYN="N">Multiplex Polymerase Chain Reaction</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020411" MajorTopicYN="N">Oligonucleotide Array Sequence Analysis</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="N">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011198" MajorTopicYN="N">Solanum tuberosum</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Diversity array technology</Keyword><Keyword MajorTopicYN="N">Nuclear genome</Keyword><Keyword MajorTopicYN="N">Protoplast fusion</Keyword><Keyword MajorTopicYN="N">Solanum × michoacanum; Solanum tuberosum</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>01</Month><Day>15</Day></PubMedPubDate><PubMedPubDate 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sortKey="Jakuczun, Henryka" sort="Jakuczun, Henryka" uniqKey="Jakuczun H" first="Henryka" last="Jakuczun">Henryka Jakuczun</name><name sortKey="Wasilewicz Flis, Iwona" sort="Wasilewicz Flis, Iwona" uniqKey="Wasilewicz Flis I" first="Iwona" last="Wasilewicz-Flis">Iwona Wasilewicz-Flis</name><name sortKey="Zimnoch Guzowska, Ewa" sort="Zimnoch Guzowska, Ewa" uniqKey="Zimnoch Guzowska E" first="Ewa" last="Zimnoch-Guzowska">Ewa Zimnoch-Guzowska</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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