Identification of Novel Associations of Candidate Genes with Resistance to Late Blight in Solanum tuberosum Group Phureja.
Identifieur interne : 000982 ( Main/Exploration ); précédent : 000981; suivant : 000983Identification of Novel Associations of Candidate Genes with Resistance to Late Blight in Solanum tuberosum Group Phureja.
Auteurs : María F. Álvarez [Colombie] ; Myrian Angarita [Colombie] ; María C. Delgado [Colombie] ; Celsa García [Colombie] ; José Jiménez-Gomez [Allemagne] ; Christiane Gebhardt [Allemagne] ; Teresa Mosquera [Colombie]Source :
- Frontiers in plant science [ 1664-462X ] ; 2017.
Abstract
The genetic basis of quantitative disease resistance has been studied in crops for several decades as an alternative to R gene mediated resistance. The most important disease in the potato crop is late blight, caused by the oomycete Phytophthora infestans. Quantitative disease resistance (QDR), as any other quantitative trait in plants, can be genetically mapped to understand the genetic architecture. Association mapping using DNA-based markers has been implemented in many crops to dissect quantitative traits. We used an association mapping approach with candidate genes to identify the first genes associated with quantitative resistance to late blight in Solanum tuberosum Group Phureja. Twenty-nine candidate genes were selected from a set of genes that were differentially expressed during the resistance response to late blight in tetraploid European potato cultivars. The 29 genes were amplified and sequenced in 104 accessions of S. tuberosum Group Phureja from Latin America. We identified 238 SNPs in the selected genes and tested them for association with resistance to late blight. The phenotypic data were obtained under field conditions by determining the area under disease progress curve (AUDPC) in two seasons and in two locations. Two genes were associated with QDR to late blight, a potato homolog of thylakoid lumen 15 kDa protein (StTL15A) and a stem 28 kDa glycoprotein (StGP28). Key message: A first association mapping experiment was conducted in Solanum tuberosum Group Phureja germplasm, which identified among 29 candidates two genes associated with quantitative resistance to late blight.
DOI: 10.3389/fpls.2017.01040
PubMed: 28674545
PubMed Central: PMC5475386
Affiliations:
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Álvarez</name><affiliation wicri:level="1"><nlm:affiliation>Facultad de Ciencias Agrarias, Universidad Nacional de ColombiaBogotá, Colombia.</nlm:affiliation><country xml:lang="fr">Colombie</country><wicri:regionArea>Facultad de Ciencias Agrarias, Universidad Nacional de ColombiaBogotá</wicri:regionArea><wicri:noRegion>Universidad Nacional de ColombiaBogotá</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Rice Program International Centre for Tropical Agriculture (CIAT)Cali, Colombia.</nlm:affiliation><country xml:lang="fr">Colombie</country><wicri:regionArea>Rice Program International Centre for Tropical Agriculture (CIAT)Cali</wicri:regionArea></affiliation></author><author><name sortKey="Angarita, Myrian" sort="Angarita, Myrian" uniqKey="Angarita M" first="Myrian" last="Angarita">Myrian Angarita</name><affiliation wicri:level="1"><nlm:affiliation>Facultad de Ciencias Agrarias, Universidad Nacional de ColombiaBogotá, Colombia.</nlm:affiliation><country xml:lang="fr">Colombie</country><wicri:regionArea>Facultad de Ciencias Agrarias, Universidad Nacional de ColombiaBogotá</wicri:regionArea><wicri:noRegion>Universidad Nacional de ColombiaBogotá</wicri:noRegion></affiliation></author><author><name sortKey="Delgado, Maria C" sort="Delgado, Maria C" uniqKey="Delgado M" first="María C" last="Delgado">María C. Delgado</name><affiliation wicri:level="1"><nlm:affiliation>Facultad de Ciencias Agrarias, Universidad Nacional de ColombiaBogotá, Colombia.</nlm:affiliation><country xml:lang="fr">Colombie</country><wicri:regionArea>Facultad de Ciencias Agrarias, Universidad Nacional de ColombiaBogotá</wicri:regionArea><wicri:noRegion>Universidad Nacional de ColombiaBogotá</wicri:noRegion></affiliation></author><author><name sortKey="Garcia, Celsa" sort="Garcia, Celsa" uniqKey="Garcia C" first="Celsa" last="García">Celsa García</name><affiliation wicri:level="1"><nlm:affiliation>Facultad de Ciencias Agrarias, Universidad Nacional de ColombiaBogotá, Colombia.</nlm:affiliation><country xml:lang="fr">Colombie</country><wicri:regionArea>Facultad de Ciencias Agrarias, Universidad Nacional de ColombiaBogotá</wicri:regionArea><wicri:noRegion>Universidad Nacional de ColombiaBogotá</wicri:noRegion></affiliation></author><author><name sortKey="Jimenez Gomez, Jose" sort="Jimenez Gomez, Jose" uniqKey="Jimenez Gomez J" first="José" last="Jiménez-Gomez">José Jiménez-Gomez</name><affiliation wicri:level="1"><nlm:affiliation>Department of Genetics and Plant Breeding, Max Planck Institute for Plant Breeding ResearchCologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Genetics and Plant Breeding, Max Planck Institute for Plant Breeding ResearchCologne</wicri:regionArea><wicri:noRegion>Max Planck Institute for Plant Breeding ResearchCologne</wicri:noRegion><wicri:noRegion>Max Planck Institute for Plant Breeding ResearchCologne</wicri:noRegion><wicri:noRegion>Max Planck Institute for Plant Breeding ResearchCologne</wicri:noRegion></affiliation></author><author><name sortKey="Gebhardt, Christiane" sort="Gebhardt, Christiane" uniqKey="Gebhardt C" first="Christiane" last="Gebhardt">Christiane Gebhardt</name><affiliation wicri:level="1"><nlm:affiliation>Department of Genetics and Plant Breeding, Max Planck Institute for Plant Breeding ResearchCologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Genetics and Plant Breeding, Max Planck Institute for Plant Breeding ResearchCologne</wicri:regionArea><wicri:noRegion>Max Planck Institute for Plant Breeding ResearchCologne</wicri:noRegion><wicri:noRegion>Max Planck Institute for Plant Breeding ResearchCologne</wicri:noRegion><wicri:noRegion>Max Planck Institute for Plant Breeding ResearchCologne</wicri:noRegion></affiliation></author><author><name sortKey="Mosquera, Teresa" sort="Mosquera, Teresa" uniqKey="Mosquera T" first="Teresa" last="Mosquera">Teresa Mosquera</name><affiliation wicri:level="1"><nlm:affiliation>Facultad de Ciencias Agrarias, Universidad Nacional de ColombiaBogotá, Colombia.</nlm:affiliation><country xml:lang="fr">Colombie</country><wicri:regionArea>Facultad de Ciencias Agrarias, Universidad Nacional de ColombiaBogotá</wicri:regionArea><wicri:noRegion>Universidad Nacional de ColombiaBogotá</wicri:noRegion></affiliation></author></analytic><series><title level="j">Frontiers in plant science</title><idno type="ISSN">1664-462X</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The genetic basis of quantitative disease resistance has been studied in crops for several decades as an alternative to <i>R</i> gene mediated resistance. The most important disease in the potato crop is late blight, caused by the oomycete <i>Phytophthora infestans.</i> Quantitative disease resistance (QDR), as any other quantitative trait in plants, can be genetically mapped to understand the genetic architecture. Association mapping using DNA-based markers has been implemented in many crops to dissect quantitative traits. We used an association mapping approach with candidate genes to identify the first genes associated with quantitative resistance to late blight in <i>Solanum tuberosum</i> Group Phureja. Twenty-nine candidate genes were selected from a set of genes that were differentially expressed during the resistance response to late blight in tetraploid European potato cultivars. The 29 genes were amplified and sequenced in 104 accessions of <i>S. tuberosum</i> Group Phureja from Latin America. We identified 238 SNPs in the selected genes and tested them for association with resistance to late blight. The phenotypic data were obtained under field conditions by determining the area under disease progress curve (AUDPC) in two seasons and in two locations. Two genes were associated with QDR to late blight, a potato homolog of thylakoid lumen 15 kDa protein (<i>StTL15A</i>) and a stem 28 kDa glycoprotein (<i>StGP28</i>). <b>Key message</b>: A first association mapping experiment was conducted in <i>Solanum tuberosum</i> Group Phureja germplasm, which identified among 29 candidates two genes associated with quantitative resistance to late blight.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">28674545</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-462X</ISSN><JournalIssue CitedMedium="Print"><Volume>8</Volume><PubDate><Year>2017</Year></PubDate></JournalIssue><Title>Frontiers in plant science</Title><ISOAbbreviation>Front Plant Sci</ISOAbbreviation></Journal><ArticleTitle>Identification of Novel Associations of Candidate Genes with Resistance to Late Blight in <i>Solanum tuberosum</i> Group Phureja.</ArticleTitle><Pagination><MedlinePgn>1040</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fpls.2017.01040</ELocationID><Abstract><AbstractText>The genetic basis of quantitative disease resistance has been studied in crops for several decades as an alternative to <i>R</i> gene mediated resistance. The most important disease in the potato crop is late blight, caused by the oomycete <i>Phytophthora infestans.</i> Quantitative disease resistance (QDR), as any other quantitative trait in plants, can be genetically mapped to understand the genetic architecture. Association mapping using DNA-based markers has been implemented in many crops to dissect quantitative traits. We used an association mapping approach with candidate genes to identify the first genes associated with quantitative resistance to late blight in <i>Solanum tuberosum</i> Group Phureja. Twenty-nine candidate genes were selected from a set of genes that were differentially expressed during the resistance response to late blight in tetraploid European potato cultivars. The 29 genes were amplified and sequenced in 104 accessions of <i>S. tuberosum</i> Group Phureja from Latin America. We identified 238 SNPs in the selected genes and tested them for association with resistance to late blight. The phenotypic data were obtained under field conditions by determining the area under disease progress curve (AUDPC) in two seasons and in two locations. Two genes were associated with QDR to late blight, a potato homolog of thylakoid lumen 15 kDa protein (<i>StTL15A</i>) and a stem 28 kDa glycoprotein (<i>StGP28</i>). <b>Key message</b>: A first association mapping experiment was conducted in <i>Solanum tuberosum</i> Group Phureja germplasm, which identified among 29 candidates two genes associated with quantitative resistance to late blight.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Álvarez</LastName><ForeName>María F</ForeName><Initials>MF</Initials><AffiliationInfo><Affiliation>Facultad de Ciencias Agrarias, Universidad Nacional de ColombiaBogotá, Colombia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Rice Program International Centre for Tropical Agriculture (CIAT)Cali, Colombia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Angarita</LastName><ForeName>Myrian</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Facultad de Ciencias Agrarias, Universidad Nacional de ColombiaBogotá, Colombia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Delgado</LastName><ForeName>María C</ForeName><Initials>MC</Initials><AffiliationInfo><Affiliation>Facultad de Ciencias Agrarias, Universidad Nacional de ColombiaBogotá, Colombia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>García</LastName><ForeName>Celsa</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Facultad de Ciencias Agrarias, Universidad Nacional de ColombiaBogotá, Colombia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jiménez-Gomez</LastName><ForeName>José</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Genetics and Plant Breeding, Max Planck Institute for Plant Breeding ResearchCologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gebhardt</LastName><ForeName>Christiane</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Department of Genetics and Plant Breeding, Max Planck Institute for Plant Breeding ResearchCologne, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mosquera</LastName><ForeName>Teresa</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Facultad de Ciencias Agrarias, Universidad Nacional de ColombiaBogotá, Colombia.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>06</Month><Day>15</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Plant Sci</MedlineTA><NlmUniqueID>101568200</NlmUniqueID><ISSNLinking>1664-462X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">SNP</Keyword><Keyword MajorTopicYN="N">association mapping</Keyword><Keyword MajorTopicYN="N">candidate genes</Keyword><Keyword MajorTopicYN="N">late blight</Keyword><Keyword MajorTopicYN="N">quantitative disease resistance</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>03</Month><Day>13</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>05</Month><Day>30</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>7</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>7</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>7</Month><Day>5</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId 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Álvarez</name></noRegion><name sortKey="Alvarez, Maria F" sort="Alvarez, Maria F" uniqKey="Alvarez M" first="María F" last="Álvarez">María F. Álvarez</name><name sortKey="Angarita, Myrian" sort="Angarita, Myrian" uniqKey="Angarita M" first="Myrian" last="Angarita">Myrian Angarita</name><name sortKey="Delgado, Maria C" sort="Delgado, Maria C" uniqKey="Delgado M" first="María C" last="Delgado">María C. Delgado</name><name sortKey="Garcia, Celsa" sort="Garcia, Celsa" uniqKey="Garcia C" first="Celsa" last="García">Celsa García</name><name sortKey="Mosquera, Teresa" sort="Mosquera, Teresa" uniqKey="Mosquera T" first="Teresa" last="Mosquera">Teresa Mosquera</name></country><country name="Allemagne"><noRegion><name sortKey="Jimenez Gomez, Jose" sort="Jimenez Gomez, Jose" uniqKey="Jimenez Gomez J" first="José" last="Jiménez-Gomez">José Jiménez-Gomez</name></noRegion><name sortKey="Gebhardt, Christiane" sort="Gebhardt, Christiane" uniqKey="Gebhardt C" first="Christiane" last="Gebhardt">Christiane Gebhardt</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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