A multi-omics study of the grapevine-downy mildew (Plasmopara viticola) pathosystem unveils a complex protein coding- and noncoding-based arms race during infection.
Identifieur interne : 000864 ( Main/Exploration ); précédent : 000863; suivant : 000865A multi-omics study of the grapevine-downy mildew (Plasmopara viticola) pathosystem unveils a complex protein coding- and noncoding-based arms race during infection.
Auteurs : Matteo Brilli [Italie] ; Elisa Asquini [Italie] ; Mirko Moser [Italie] ; Pier Luigi Bianchedi [Italie] ; Michele Perazzolli [Italie] ; Azeddine Si-Ammour [Italie]Source :
- Scientific reports [ 2045-2322 ] ; 2018.
Descripteurs français
- KwdFr :
- MESH :
- croissance et développement : Oomycetes.
- génétique : Oomycetes.
- immunologie : Maladies des plantes, Vitis.
- microbiologie : Maladies des plantes, Vitis.
- Analyse de séquence d'ADN, Extinction de l'expression des gènes, Interactions hôte-pathogène.
English descriptors
- KwdEn :
- MESH :
- genetics : Oomycetes.
- growth & development : Oomycetes.
- immunology : Plant Diseases, Vitis.
- microbiology : Plant Diseases, Vitis.
- Gene Silencing, Host-Pathogen Interactions, Sequence Analysis, DNA.
Abstract
Fungicides are applied intensively to prevent downy mildew infections of grapevines (Vitis vinifera) with high impact on the environment. In order to develop alternative strategies we sequenced the genome of the oomycete pathogen Plasmopara viticola causing this disease. We show that it derives from a Phytophthora-like ancestor that switched to obligate biotrophy by losing genes involved in nitrogen metabolism and γ-Aminobutyric acid catabolism. By combining multiple omics approaches we characterized the pathosystem and identified a RxLR effector that trigger an immune response in the wild species V. riparia. This effector is an ideal marker to screen novel grape resistant varieties. Our study reveals an unprecedented bidirectional noncoding RNA-based mechanism that, in one direction might be fundamental for P. viticola to proficiently infect its host, and in the other might reduce the effects of the infection on the plant.
DOI: 10.1038/s41598-018-19158-8
PubMed: 29335535
PubMed Central: PMC5768699
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Mach 1, 38010, San Michele all'Adige (TN), Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Genomics and Biology of Fruit Crops, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, San Michele all'Adige (TN)</wicri:regionArea><wicri:noRegion>San Michele all'Adige (TN)</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), University of Padova, Agripolis, V.le dell'Università, 16, 35020, Legnaro (PD), Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), University of Padova, Agripolis, V.le dell'Università, 16, 35020, Legnaro (PD)</wicri:regionArea><wicri:noRegion>Legnaro (PD)</wicri:noRegion></affiliation></author><author><name sortKey="Asquini, Elisa" sort="Asquini, Elisa" uniqKey="Asquini E" first="Elisa" last="Asquini">Elisa Asquini</name><affiliation wicri:level="1"><nlm:affiliation>Department of Genomics and Biology of Fruit Crops, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, San Michele all'Adige (TN), Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Genomics and Biology of Fruit Crops, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, San Michele all'Adige (TN)</wicri:regionArea><wicri:noRegion>San Michele all'Adige (TN)</wicri:noRegion></affiliation></author><author><name sortKey="Moser, Mirko" sort="Moser, Mirko" uniqKey="Moser M" first="Mirko" last="Moser">Mirko Moser</name><affiliation wicri:level="1"><nlm:affiliation>Department of Genomics and Biology of Fruit Crops, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, San Michele all'Adige (TN), Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Genomics and Biology of Fruit Crops, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, San Michele all'Adige (TN)</wicri:regionArea><wicri:noRegion>San Michele all'Adige (TN)</wicri:noRegion></affiliation></author><author><name sortKey="Bianchedi, Pier Luigi" sort="Bianchedi, Pier Luigi" uniqKey="Bianchedi P" first="Pier Luigi" last="Bianchedi">Pier Luigi Bianchedi</name><affiliation wicri:level="1"><nlm:affiliation>Department of Genomics and Biology of Fruit Crops, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, San Michele all'Adige (TN), Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Genomics and Biology of Fruit Crops, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, San Michele all'Adige (TN)</wicri:regionArea><wicri:noRegion>San Michele all'Adige (TN)</wicri:noRegion></affiliation></author><author><name sortKey="Perazzolli, Michele" sort="Perazzolli, Michele" uniqKey="Perazzolli M" first="Michele" last="Perazzolli">Michele Perazzolli</name><affiliation wicri:level="1"><nlm:affiliation>Department of Genomics and Biology of Fruit Crops, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, San Michele all'Adige (TN), Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Genomics and Biology of Fruit Crops, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, San Michele all'Adige (TN)</wicri:regionArea><wicri:noRegion>San Michele all'Adige (TN)</wicri:noRegion></affiliation></author><author><name sortKey="Si Ammour, Azeddine" sort="Si Ammour, Azeddine" uniqKey="Si Ammour A" first="Azeddine" last="Si-Ammour">Azeddine Si-Ammour</name><affiliation wicri:level="1"><nlm:affiliation>Department of Genomics and Biology of Fruit Crops, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, San Michele all'Adige (TN), Italy. azeddine.siammour@fmach.it.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Genomics and Biology of Fruit Crops, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, San Michele all'Adige (TN)</wicri:regionArea><wicri:noRegion>San Michele all'Adige (TN)</wicri:noRegion></affiliation></author></analytic><series><title level="j">Scientific reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Gene Silencing (MeSH)</term><term>Host-Pathogen Interactions (MeSH)</term><term>Oomycetes (genetics)</term><term>Oomycetes (growth & development)</term><term>Plant Diseases (immunology)</term><term>Plant Diseases (microbiology)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Vitis (immunology)</term><term>Vitis (microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence d'ADN (MeSH)</term><term>Extinction de l'expression des gènes (MeSH)</term><term>Interactions hôte-pathogène (MeSH)</term><term>Maladies des plantes (immunologie)</term><term>Maladies des plantes (microbiologie)</term><term>Oomycetes (croissance et développement)</term><term>Oomycetes (génétique)</term><term>Vitis (immunologie)</term><term>Vitis (microbiologie)</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Oomycetes</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Oomycetes</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Oomycetes</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Oomycetes</term></keywords><keywords scheme="MESH" qualifier="immunologie" xml:lang="fr"><term>Maladies des plantes</term><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="immunology" xml:lang="en"><term>Plant Diseases</term><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Vitis</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Silencing</term><term>Host-Pathogen Interactions</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Extinction de l'expression des gènes</term><term>Interactions hôte-pathogène</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Fungicides are applied intensively to prevent downy mildew infections of grapevines (Vitis vinifera) with high impact on the environment. In order to develop alternative strategies we sequenced the genome of the oomycete pathogen Plasmopara viticola causing this disease. We show that it derives from a Phytophthora-like ancestor that switched to obligate biotrophy by losing genes involved in nitrogen metabolism and γ-Aminobutyric acid catabolism. By combining multiple omics approaches we characterized the pathosystem and identified a RxLR effector that trigger an immune response in the wild species V. riparia. This effector is an ideal marker to screen novel grape resistant varieties. Our study reveals an unprecedented bidirectional noncoding RNA-based mechanism that, in one direction might be fundamental for P. viticola to proficiently infect its host, and in the other might reduce the effects of the infection on the plant.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29335535</PMID><DateCompleted><Year>2018</Year><Month>11</Month><Day>26</Day></DateCompleted><DateRevised><Year>2019</Year><Month>01</Month><Day>15</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2045-2322</ISSN><JournalIssue CitedMedium="Internet"><Volume>8</Volume><Issue>1</Issue><PubDate><Year>2018</Year><Month>01</Month><Day>15</Day></PubDate></JournalIssue><Title>Scientific reports</Title><ISOAbbreviation>Sci Rep</ISOAbbreviation></Journal><ArticleTitle>A multi-omics study of the grapevine-downy mildew (Plasmopara viticola) pathosystem unveils a complex protein coding- and noncoding-based arms race during infection.</ArticleTitle><Pagination><MedlinePgn>757</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/s41598-018-19158-8</ELocationID><Abstract><AbstractText>Fungicides are applied intensively to prevent downy mildew infections of grapevines (Vitis vinifera) with high impact on the environment. In order to develop alternative strategies we sequenced the genome of the oomycete pathogen Plasmopara viticola causing this disease. We show that it derives from a Phytophthora-like ancestor that switched to obligate biotrophy by losing genes involved in nitrogen metabolism and γ-Aminobutyric acid catabolism. By combining multiple omics approaches we characterized the pathosystem and identified a RxLR effector that trigger an immune response in the wild species V. riparia. This effector is an ideal marker to screen novel grape resistant varieties. Our study reveals an unprecedented bidirectional noncoding RNA-based mechanism that, in one direction might be fundamental for P. viticola to proficiently infect its host, and in the other might reduce the effects of the infection on the plant.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Brilli</LastName><ForeName>Matteo</ForeName><Initials>M</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-9891-4617</Identifier><AffiliationInfo><Affiliation>Department of Genomics and Biology of Fruit Crops, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, San Michele all'Adige (TN), Italy.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), University of Padova, Agripolis, V.le dell'Università, 16, 35020, Legnaro (PD), Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Asquini</LastName><ForeName>Elisa</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Department of Genomics and Biology of Fruit Crops, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, San Michele all'Adige (TN), Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Moser</LastName><ForeName>Mirko</ForeName><Initials>M</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-1936-984X</Identifier><AffiliationInfo><Affiliation>Department of Genomics and Biology of Fruit Crops, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, San Michele all'Adige (TN), Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bianchedi</LastName><ForeName>Pier Luigi</ForeName><Initials>PL</Initials><AffiliationInfo><Affiliation>Department of Genomics and Biology of Fruit Crops, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, San Michele all'Adige (TN), Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Perazzolli</LastName><ForeName>Michele</ForeName><Initials>M</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-7218-9963</Identifier><AffiliationInfo><Affiliation>Department of Genomics and Biology of Fruit Crops, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, San Michele all'Adige (TN), Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Si-Ammour</LastName><ForeName>Azeddine</ForeName><Initials>A</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-5504-4444</Identifier><AffiliationInfo><Affiliation>Department of Genomics and Biology of Fruit Crops, Research and Innovation Centre, Fondazione Edmund Mach, Via E. Mach 1, 38010, San Michele all'Adige (TN), Italy. azeddine.siammour@fmach.it.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>01</Month><Day>15</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Sci Rep</MedlineTA><NlmUniqueID>101563288</NlmUniqueID><ISSNLinking>2045-2322</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D020868" MajorTopicYN="N">Gene Silencing</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D054884" MajorTopicYN="Y">Host-Pathogen Interactions</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009868" MajorTopicYN="N">Oomycetes</DescriptorName><QualifierName UI="Q000235" 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Mar;45(3):330-3</Citation><ArticleIdList><ArticleId IdType="pubmed">23377181</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2015 Oct 05;16:741</Citation><ArticleIdList><ArticleId IdType="pubmed">26438312</ArticleId></ArticleIdList></Reference><Reference><Citation>Fungal Biol. 2011 Jul;115(7):683-96</Citation><ArticleIdList><ArticleId IdType="pubmed">21724174</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2003 Jul 1;4(4):237-48</Citation><ArticleIdList><ArticleId IdType="pubmed">20569384</ArticleId></ArticleIdList></Reference><Reference><Citation>Sci Rep. 2017 Apr 18;7:46553</Citation><ArticleIdList><ArticleId IdType="pubmed">28417959</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2009 Sep 17;461(7262):393-8</Citation><ArticleIdList><ArticleId IdType="pubmed">19741609</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2013 Apr;30(4):772-80</Citation><ArticleIdList><ArticleId IdType="pubmed">23329690</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2015 Oct 1;31(19):3210-2</Citation><ArticleIdList><ArticleId IdType="pubmed">26059717</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Bioinformatics. 2006 Feb 09;7:62</Citation><ArticleIdList><ArticleId IdType="pubmed">16469098</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2010 Sep;22(9):3130-41</Citation><ArticleIdList><ArticleId IdType="pubmed">20884801</ArticleId></ArticleIdList></Reference><Reference><Citation>Front Plant Sci. 2016 Mar 30;7:382</Citation><ArticleIdList><ArticleId IdType="pubmed">27066032</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Biol. 2011 Jul;9(7):e1001094</Citation><ArticleIdList><ArticleId IdType="pubmed">21750662</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2013 Jan;197(1):251-63</Citation><ArticleIdList><ArticleId IdType="pubmed">23153246</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Biotechnol. 2010 May;28(5):511-5</Citation><ArticleIdList><ArticleId IdType="pubmed">20436464</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 1997 Mar 1;25(5):955-64</Citation><ArticleIdList><ArticleId IdType="pubmed">9023104</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2016 Jan;85(1):70-82</Citation><ArticleIdList><ArticleId IdType="pubmed">26611654</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2006 Nov 16;444(7117):323-9</Citation><ArticleIdList><ArticleId IdType="pubmed">17108957</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Microbe Interact. 1997 Dec;10(9):1045-53</Citation><ArticleIdList><ArticleId IdType="pubmed">9390419</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2007 Aug;19(8):2349-69</Citation><ArticleIdList><ArticleId IdType="pubmed">17675403</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Pathog. 2016 Oct 13;12 (10 ):e1005901</Citation><ArticleIdList><ArticleId IdType="pubmed">27737019</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Phytopathol. 2011;49:507-31</Citation><ArticleIdList><ArticleId IdType="pubmed">21663437</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2006 Jul 15;22(14):e9-15</Citation><ArticleIdList><ArticleId IdType="pubmed">16873526</ArticleId></ArticleIdList></Reference><Reference><Citation>mSphere. 2017 Apr 12;2(2):</Citation><ArticleIdList><ArticleId IdType="pubmed">28435885</ArticleId></ArticleIdList></Reference><Reference><Citation>Front Microbiol. 2016 May 18;7:709</Citation><ArticleIdList><ArticleId IdType="pubmed">27242731</ArticleId></ArticleIdList></Reference><Reference><Citation>J Biol Chem. 2001 Jun 15;276(24):21578-84</Citation><ArticleIdList><ArticleId IdType="pubmed">11262411</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2015 May;16(4):413-34</Citation><ArticleIdList><ArticleId IdType="pubmed">25178392</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2009 Jul;10(4):547-62</Citation><ArticleIdList><ArticleId IdType="pubmed">19523107</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell Physiol. 2016 Jan;57(1):69-81</Citation><ArticleIdList><ArticleId IdType="pubmed">26546320</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2010 Dec 10;330(6010):1549-1551</Citation><ArticleIdList><ArticleId IdType="pubmed">21148394</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2014 Jan;42(Database issue):D222-30</Citation><ArticleIdList><ArticleId IdType="pubmed">24288371</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2009 Jun;19(6):1117-23</Citation><ArticleIdList><ArticleId IdType="pubmed">19251739</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2014 May 1;30(9):1312-3</Citation><ArticleIdList><ArticleId IdType="pubmed">24451623</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2006 Nov;7(6):519-31</Citation><ArticleIdList><ArticleId IdType="pubmed">20507466</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2000 Apr;10(4):511-5</Citation><ArticleIdList><ArticleId IdType="pubmed">10779490</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Plants. 2016 Sep 19;2:16151</Citation><ArticleIdList><ArticleId IdType="pubmed">27643635</ArticleId></ArticleIdList></Reference><Reference><Citation>Eukaryot Cell. 2012 Nov;11(11):1304-12</Citation><ArticleIdList><ArticleId IdType="pubmed">22923046</ArticleId></ArticleIdList></Reference><Reference><Citation>J Comput Biol. 2010 Nov;17(11):1519-33</Citation><ArticleIdList><ArticleId IdType="pubmed">20958248</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2007;35(9):3100-8</Citation><ArticleIdList><ArticleId IdType="pubmed">17452365</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Protoc. 2012 Mar 01;7(3):562-78</Citation><ArticleIdList><ArticleId IdType="pubmed">22383036</ArticleId></ArticleIdList></Reference><Reference><Citation>J Integr Plant Biol. 2016 Apr;58(4):312-27</Citation><ArticleIdList><ArticleId IdType="pubmed">26748943</ArticleId></ArticleIdList></Reference><Reference><Citation>J Exp Bot. 2012 Jun;63(11):4123-31</Citation><ArticleIdList><ArticleId IdType="pubmed">22451722</ArticleId></ArticleIdList></Reference><Reference><Citation>Syst Biol. 2007 Aug;56(4):564-77</Citation><ArticleIdList><ArticleId IdType="pubmed">17654362</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2013 Oct 4;342(6154):118-23</Citation><ArticleIdList><ArticleId IdType="pubmed">24092744</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Announc. 2016 Sep 22;4(5):null</Citation><ArticleIdList><ArticleId IdType="pubmed">27660780</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2012 Feb;40(4):e28</Citation><ArticleIdList><ArticleId IdType="pubmed">22140118</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2004 Nov 1;20(16):2878-9</Citation><ArticleIdList><ArticleId IdType="pubmed">15145805</ArticleId></ArticleIdList></Reference><Reference><Citation>Syst Biol. 2010 May;59(3):307-21</Citation><ArticleIdList><ArticleId IdType="pubmed">20525638</ArticleId></ArticleIdList></Reference><Reference><Citation>Fungal Genet Biol. 1998 Dec;25(3):181-95</Citation><ArticleIdList><ArticleId IdType="pubmed">9917372</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2007 Sep 27;449(7161):463-7</Citation><ArticleIdList><ArticleId IdType="pubmed">17721507</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Italie</li></country></list><tree><country name="Italie"><noRegion><name sortKey="Brilli, Matteo" sort="Brilli, Matteo" uniqKey="Brilli M" first="Matteo" last="Brilli">Matteo Brilli</name></noRegion><name sortKey="Asquini, Elisa" sort="Asquini, Elisa" uniqKey="Asquini E" first="Elisa" last="Asquini">Elisa Asquini</name><name sortKey="Bianchedi, Pier Luigi" sort="Bianchedi, Pier Luigi" uniqKey="Bianchedi P" first="Pier Luigi" last="Bianchedi">Pier Luigi Bianchedi</name><name sortKey="Brilli, Matteo" sort="Brilli, Matteo" uniqKey="Brilli M" first="Matteo" last="Brilli">Matteo Brilli</name><name sortKey="Moser, Mirko" sort="Moser, Mirko" uniqKey="Moser M" first="Mirko" last="Moser">Mirko Moser</name><name sortKey="Perazzolli, Michele" sort="Perazzolli, Michele" uniqKey="Perazzolli M" first="Michele" last="Perazzolli">Michele Perazzolli</name><name sortKey="Si Ammour, Azeddine" sort="Si Ammour, Azeddine" uniqKey="Si Ammour A" first="Azeddine" last="Si-Ammour">Azeddine Si-Ammour</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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