Tomato lncRNA23468 functions as a competing endogenous RNA to modulate NBS-LRR genes by decoying miR482b in the tomato-Phytophthora infestans interaction.
Identifieur interne : 000356 ( Main/Exploration ); précédent : 000355; suivant : 000357Tomato lncRNA23468 functions as a competing endogenous RNA to modulate NBS-LRR genes by decoying miR482b in the tomato-Phytophthora infestans interaction.
Auteurs : Ning Jiang [République populaire de Chine] ; Jun Cui [République populaire de Chine] ; Yunsheng Shi [République populaire de Chine] ; Guanglei Yang [République populaire de Chine] ; Xiaoxu Zhou [République populaire de Chine] ; Xinxin Hou [République populaire de Chine] ; Jun Meng [République populaire de Chine] ; Yushi Luan [République populaire de Chine]Source :
- Horticulture research [ 2052-7276 ] ; 2019.
Abstract
Our previous studies indicated that tomato miR482b could negatively regulate the resistance of tomato to Phytophthora infestans and the expression of miR482b was decreased after inoculation with P. infestans. However, the mechanism by which the accumulation of miR482b is suppressed remains unclear. In this study, we wrote a program to identify 89 long noncoding RNA (lncRNA)-originated endogenous target mimics (eTMs) for 46 miRNAs from our RNA-Seq data. Three tomato lncRNAs, lncRNA23468, lncRNA01308 and lncRNA13262, contained conserved eTM sites for miR482b. When lncRNA23468 was overexpressed in tomato, miR482b expression was significantly decreased, and the expression of the target genes, NBS-LRRs, was significantly increased, resulting in enhanced resistance to P. infestans. Silencing lncRNA23468 in tomato led to the increased accumulation of miR482b and decreased accumulation of NBS-LRRs, as well as reduced resistance to P. infestans. In addition, the accumulation of both miR482b and NBS-LRRs was not significantly changed in tomato plants that overexpressed lncRNA23468 with a mutated eTM site. Based on the VIGS system, a target gene of miR482b, Solyc02g036270.2, was silenced. The disease symptoms of the VIGS-Solyc02g036270.2 tomato plants were in accordance with those of tomato plants in which lncRNA23468 was silenced after inoculation with P. infestans. More severe disease symptoms were found in the modified plants than in the control plants. Our results demonstrate that lncRNAs functioning as eTMs may modulate the effects of miRNAs in tomato and provide insight into how the lncRNA23468-miR482b-NBS-LRR module regulates tomato resistance to P. infestans.
DOI: 10.1038/s41438-018-0096-0
PubMed: 30729018
PubMed Central: PMC6355781
Affiliations:
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Dalian</wicri:noRegion></affiliation></author><author><name sortKey="Luan, Yushi" sort="Luan, Yushi" uniqKey="Luan Y" first="Yushi" last="Luan">Yushi Luan</name><affiliation wicri:level="1"><nlm:affiliation>1School of Life Science and Biotechnology, Dalian University of Technology, 116024 Dalian, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>1School of Life Science and Biotechnology, Dalian University of Technology, 116024 Dalian</wicri:regionArea><wicri:noRegion>116024 Dalian</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2019">2019</date><idno type="RBID">pubmed:30729018</idno><idno type="pmid">30729018</idno><idno type="doi">10.1038/s41438-018-0096-0</idno><idno type="pmc">PMC6355781</idno><idno type="wicri:Area/Main/Corpus">000550</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000550</idno><idno 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sort="Cui, Jun" uniqKey="Cui J" first="Jun" last="Cui">Jun Cui</name><affiliation wicri:level="1"><nlm:affiliation>1School of Life Science and Biotechnology, Dalian University of Technology, 116024 Dalian, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>1School of Life Science and Biotechnology, Dalian University of Technology, 116024 Dalian</wicri:regionArea><wicri:noRegion>116024 Dalian</wicri:noRegion></affiliation></author><author><name sortKey="Shi, Yunsheng" sort="Shi, Yunsheng" uniqKey="Shi Y" first="Yunsheng" last="Shi">Yunsheng Shi</name><affiliation wicri:level="1"><nlm:affiliation>2School of Computer Science and Technology, Dalian University of Technology, 116024 Dalian, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>2School of Computer Science and Technology, Dalian University of Technology, 116024 Dalian</wicri:regionArea><wicri:noRegion>116024 Dalian</wicri:noRegion></affiliation></author><author><name sortKey="Yang, Guanglei" sort="Yang, Guanglei" uniqKey="Yang G" first="Guanglei" last="Yang">Guanglei Yang</name><affiliation wicri:level="1"><nlm:affiliation>1School of Life Science and Biotechnology, Dalian University of Technology, 116024 Dalian, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>1School of Life Science and Biotechnology, Dalian University of Technology, 116024 Dalian</wicri:regionArea><wicri:noRegion>116024 Dalian</wicri:noRegion></affiliation></author><author><name sortKey="Zhou, Xiaoxu" sort="Zhou, Xiaoxu" uniqKey="Zhou X" first="Xiaoxu" last="Zhou">Xiaoxu Zhou</name><affiliation wicri:level="1"><nlm:affiliation>1School of Life Science and Biotechnology, Dalian University of Technology, 116024 Dalian, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>1School of Life Science and Biotechnology, Dalian University of Technology, 116024 Dalian</wicri:regionArea><wicri:noRegion>116024 Dalian</wicri:noRegion></affiliation></author><author><name sortKey="Hou, Xinxin" sort="Hou, Xinxin" uniqKey="Hou X" first="Xinxin" last="Hou">Xinxin Hou</name><affiliation wicri:level="1"><nlm:affiliation>1School of Life Science and Biotechnology, Dalian University of Technology, 116024 Dalian, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>1School of Life Science and Biotechnology, Dalian University of Technology, 116024 Dalian</wicri:regionArea><wicri:noRegion>116024 Dalian</wicri:noRegion></affiliation></author><author><name sortKey="Meng, Jun" sort="Meng, Jun" uniqKey="Meng J" first="Jun" last="Meng">Jun Meng</name><affiliation wicri:level="1"><nlm:affiliation>2School of Computer Science and Technology, Dalian University of Technology, 116024 Dalian, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>2School of Computer Science and Technology, Dalian University of Technology, 116024 Dalian</wicri:regionArea><wicri:noRegion>116024 Dalian</wicri:noRegion></affiliation></author><author><name sortKey="Luan, Yushi" sort="Luan, Yushi" uniqKey="Luan Y" first="Yushi" last="Luan">Yushi Luan</name><affiliation wicri:level="1"><nlm:affiliation>1School of Life Science and Biotechnology, Dalian University of Technology, 116024 Dalian, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>1School of Life Science and Biotechnology, Dalian University of Technology, 116024 Dalian</wicri:regionArea><wicri:noRegion>116024 Dalian</wicri:noRegion></affiliation></author></analytic><series><title level="j">Horticulture research</title><idno type="ISSN">2052-7276</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Our previous studies indicated that tomato miR482b could negatively regulate the resistance of tomato to <i>Phytophthora infestans</i> and the expression of miR482b was decreased after inoculation with <i>P. infestans</i>. However, the mechanism by which the accumulation of miR482b is suppressed remains unclear. In this study, we wrote a program to identify 89 long noncoding RNA (lncRNA)-originated endogenous target mimics (eTMs) for 46 miRNAs from our RNA-Seq data. Three tomato lncRNAs, lncRNA23468, lncRNA01308 and lncRNA13262, contained conserved eTM sites for miR482b. When lncRNA23468 was overexpressed in tomato, miR482b expression was significantly decreased, and the expression of the target genes, <i>NBS-LRRs</i>, was significantly increased, resulting in enhanced resistance to <i>P. infestans</i>. Silencing lncRNA23468 in tomato led to the increased accumulation of miR482b and decreased accumulation of NBS-LRRs, as well as reduced resistance to <i>P. infestans</i>. In addition, the accumulation of both miR482b and NBS-LRRs was not significantly changed in tomato plants that overexpressed lncRNA23468 with a mutated eTM site. Based on the VIGS system, a target gene of miR482b, <i>Solyc02g036270.2</i>, was silenced. The disease symptoms of the VIGS-<i>Solyc02g036270.2</i> tomato plants were in accordance with those of tomato plants in which lncRNA23468 was silenced after inoculation with <i>P. infestans</i>. More severe disease symptoms were found in the modified plants than in the control plants. Our results demonstrate that lncRNAs functioning as eTMs may modulate the effects of miRNAs in tomato and provide insight into how the lncRNA23468-miR482b-NBS-LRR module regulates tomato resistance to <i>P. infestans</i>.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">30729018</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">2052-7276</ISSN><JournalIssue CitedMedium="Print"><Volume>6</Volume><PubDate><Year>2019</Year></PubDate></JournalIssue><Title>Horticulture research</Title><ISOAbbreviation>Hortic Res</ISOAbbreviation></Journal><ArticleTitle>Tomato lncRNA23468 functions as a competing endogenous RNA to modulate <i>NBS-LRR</i> genes by decoying miR482b in the tomato<i>-Phytophthora infestans</i> interaction.</ArticleTitle><Pagination><MedlinePgn>28</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/s41438-018-0096-0</ELocationID><Abstract><AbstractText>Our previous studies indicated that tomato miR482b could negatively regulate the resistance of tomato to <i>Phytophthora infestans</i> and the expression of miR482b was decreased after inoculation with <i>P. infestans</i>. However, the mechanism by which the accumulation of miR482b is suppressed remains unclear. In this study, we wrote a program to identify 89 long noncoding RNA (lncRNA)-originated endogenous target mimics (eTMs) for 46 miRNAs from our RNA-Seq data. Three tomato lncRNAs, lncRNA23468, lncRNA01308 and lncRNA13262, contained conserved eTM sites for miR482b. When lncRNA23468 was overexpressed in tomato, miR482b expression was significantly decreased, and the expression of the target genes, <i>NBS-LRRs</i>, was significantly increased, resulting in enhanced resistance to <i>P. infestans</i>. Silencing lncRNA23468 in tomato led to the increased accumulation of miR482b and decreased accumulation of NBS-LRRs, as well as reduced resistance to <i>P. infestans</i>. In addition, the accumulation of both miR482b and NBS-LRRs was not significantly changed in tomato plants that overexpressed lncRNA23468 with a mutated eTM site. Based on the VIGS system, a target gene of miR482b, <i>Solyc02g036270.2</i>, was silenced. The disease symptoms of the VIGS-<i>Solyc02g036270.2</i> tomato plants were in accordance with those of tomato plants in which lncRNA23468 was silenced after inoculation with <i>P. infestans</i>. More severe disease symptoms were found in the modified plants than in the control plants. Our results demonstrate that lncRNAs functioning as eTMs may modulate the effects of miRNAs in tomato and provide insight into how the lncRNA23468-miR482b-NBS-LRR module regulates tomato resistance to <i>P. infestans</i>.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Jiang</LastName><ForeName>Ning</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>1School of Life Science and Biotechnology, Dalian University of Technology, 116024 Dalian, China.</Affiliation><Identifier Source="ISNI">0000 0000 9247 7930</Identifier><Identifier Source="GRID">grid.30055.33</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cui</LastName><ForeName>Jun</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>1School of Life Science and Biotechnology, Dalian University of Technology, 116024 Dalian, China.</Affiliation><Identifier Source="ISNI">0000 0000 9247 7930</Identifier><Identifier Source="GRID">grid.30055.33</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shi</LastName><ForeName>Yunsheng</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>2School of Computer Science and Technology, Dalian University of Technology, 116024 Dalian, China.</Affiliation><Identifier Source="ISNI">0000 0000 9247 7930</Identifier><Identifier Source="GRID">grid.30055.33</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Guanglei</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>1School of Life Science and Biotechnology, Dalian University of Technology, 116024 Dalian, China.</Affiliation><Identifier Source="ISNI">0000 0000 9247 7930</Identifier><Identifier Source="GRID">grid.30055.33</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhou</LastName><ForeName>Xiaoxu</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>1School of Life Science and Biotechnology, Dalian University of Technology, 116024 Dalian, China.</Affiliation><Identifier Source="ISNI">0000 0000 9247 7930</Identifier><Identifier Source="GRID">grid.30055.33</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hou</LastName><ForeName>Xinxin</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>1School of Life Science and Biotechnology, Dalian University of Technology, 116024 Dalian, China.</Affiliation><Identifier Source="ISNI">0000 0000 9247 7930</Identifier><Identifier Source="GRID">grid.30055.33</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Meng</LastName><ForeName>Jun</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>2School of Computer Science and Technology, Dalian University of Technology, 116024 Dalian, China.</Affiliation><Identifier Source="ISNI">0000 0000 9247 7930</Identifier><Identifier Source="GRID">grid.30055.33</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Luan</LastName><ForeName>Yushi</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>1School of Life Science and Biotechnology, Dalian University of Technology, 116024 Dalian, China.</Affiliation><Identifier Source="ISNI">0000 0000 9247 7930</Identifier><Identifier Source="GRID">grid.30055.33</Identifier></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>02</Month><Day>01</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Hortic Res</MedlineTA><NlmUniqueID>101655540</NlmUniqueID><ISSNLinking>2052-7276</ISSNLinking></MedlineJournalInfo><CoiStatement>The authors declare that they have no conflict of interest.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate 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Chine"><noRegion><name sortKey="Jiang, Ning" sort="Jiang, Ning" uniqKey="Jiang N" first="Ning" last="Jiang">Ning Jiang</name></noRegion><name sortKey="Cui, Jun" sort="Cui, Jun" uniqKey="Cui J" first="Jun" last="Cui">Jun Cui</name><name sortKey="Hou, Xinxin" sort="Hou, Xinxin" uniqKey="Hou X" first="Xinxin" last="Hou">Xinxin Hou</name><name sortKey="Luan, Yushi" sort="Luan, Yushi" uniqKey="Luan Y" first="Yushi" last="Luan">Yushi Luan</name><name sortKey="Meng, Jun" sort="Meng, Jun" uniqKey="Meng J" first="Jun" last="Meng">Jun Meng</name><name sortKey="Shi, Yunsheng" sort="Shi, Yunsheng" uniqKey="Shi Y" first="Yunsheng" last="Shi">Yunsheng Shi</name><name sortKey="Yang, Guanglei" sort="Yang, Guanglei" uniqKey="Yang G" first="Guanglei" last="Yang">Guanglei Yang</name><name sortKey="Zhou, Xiaoxu" sort="Zhou, Xiaoxu" uniqKey="Zhou X" first="Xiaoxu" last="Zhou">Xiaoxu Zhou</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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