Genetically diverse long-lived clonal lineages of Phytophthora capsici from pepper in Gansu, China.
Identifieur interne : 001304 ( Main/Corpus ); précédent : 001303; suivant : 001305Genetically diverse long-lived clonal lineages of Phytophthora capsici from pepper in Gansu, China.
Auteurs : Jian Hu ; Zhili Pang ; Yang Bi ; Jingpeng Shao ; Yongzhao Diao ; Jianguo Guo ; Yonggang Liu ; Heping Lv ; Kurt Lamour ; Xili LiuSource :
- Phytopathology [ 0031-949X ] ; 2013.
English descriptors
- KwdEn :
- Alanine (analogs & derivatives), Alanine (pharmacology), Capsicum (parasitology), China (MeSH), Fungicides, Industrial (pharmacology), Genetic Markers (genetics), Genetic Variation (MeSH), Genome (genetics), Genotype (MeSH), Geography (MeSH), Microsatellite Repeats (genetics), Phytophthora (drug effects), Phytophthora (genetics), Phytophthora (isolation & purification), Phytophthora (physiology), Plant Diseases (parasitology).
- MESH :
- chemical , analogs & derivatives : Alanine.
- chemical , genetics : Genetic Markers.
- chemical , pharmacology : Alanine, Fungicides, Industrial.
- drug effects : Phytophthora.
- genetics : Genome, Microsatellite Repeats, Phytophthora.
- isolation & purification : Phytophthora.
- parasitology : Capsicum, Plant Diseases.
- physiology : Phytophthora.
- China, Genetic Variation, Genotype, Geography.
Abstract
Phytophthora capsici causes significant loss to pepper production in China, and our objective was to investigate the population structure in Gansu province. Between 2007 and 2011, 279 isolates were collected from pepper at 24 locations. Isolates (or subsets) were assessed for simple sequence repeat (SSR) genotype, metalaxyl resistance, mating type, and physiological race using cultivars from the World Vegetable Center (AVRDC) and New Mexico recombinant inbred lines (NMRILs). The A1 and A2 mating types were recovered from nine locations and metalaxyl-resistant isolates from three locations. A total of 104 isolates tested on the AVRDC panel resolved five physiological races. None of 42 isolates tested on the NMRIL panel caused visible infection. SSR genotyping of 127 isolates revealed 59 unique genotypes, with 42 present as singletons and 17 having 2 to 13 isolates. Isolates with identical genotypes were recovered from multiple sites across multiple years and, in many cases, had different race types or metalaxyl sensitivities. Isolates clustered into three groups with each group having almost exclusively the A1 or A2 mating type. Overall it appears long-lived genetically diverse clonal lineages are dispersed across Gansu, outcrossing is rare, and functionally important variation exists within a clonal framework.
DOI: 10.1094/PHYTO-01-13-0016-R
PubMed: 23550971
Links to Exploration step
pubmed:23550971Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genetically diverse long-lived clonal lineages of Phytophthora capsici from pepper in Gansu, China.</title><author><name sortKey="Hu, Jian" sort="Hu, Jian" uniqKey="Hu J" first="Jian" last="Hu">Jian Hu</name><affiliation><nlm:affiliation>Department of Plant Pathology, China Agricultural University, Beijing 100193, China.</nlm:affiliation></affiliation></author><author><name sortKey="Pang, Zhili" sort="Pang, Zhili" uniqKey="Pang Z" first="Zhili" last="Pang">Zhili Pang</name></author><author><name sortKey="Bi, Yang" sort="Bi, Yang" uniqKey="Bi Y" first="Yang" last="Bi">Yang Bi</name></author><author><name sortKey="Shao, Jingpeng" sort="Shao, Jingpeng" uniqKey="Shao J" first="Jingpeng" last="Shao">Jingpeng Shao</name></author><author><name sortKey="Diao, Yongzhao" sort="Diao, Yongzhao" uniqKey="Diao Y" first="Yongzhao" last="Diao">Yongzhao Diao</name></author><author><name sortKey="Guo, Jianguo" sort="Guo, Jianguo" uniqKey="Guo J" first="Jianguo" last="Guo">Jianguo Guo</name></author><author><name sortKey="Liu, Yonggang" sort="Liu, Yonggang" uniqKey="Liu Y" first="Yonggang" last="Liu">Yonggang Liu</name></author><author><name sortKey="Lv, Heping" sort="Lv, Heping" uniqKey="Lv H" first="Heping" last="Lv">Heping Lv</name></author><author><name sortKey="Lamour, Kurt" sort="Lamour, Kurt" uniqKey="Lamour K" first="Kurt" last="Lamour">Kurt Lamour</name></author><author><name sortKey="Liu, Xili" sort="Liu, Xili" uniqKey="Liu X" first="Xili" last="Liu">Xili Liu</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2013">2013</date><idno type="RBID">pubmed:23550971</idno><idno type="pmid">23550971</idno><idno type="doi">10.1094/PHYTO-01-13-0016-R</idno><idno type="wicri:Area/Main/Corpus">001304</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001304</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genetically diverse long-lived clonal lineages of Phytophthora capsici from pepper in Gansu, China.</title><author><name sortKey="Hu, Jian" sort="Hu, Jian" uniqKey="Hu J" first="Jian" last="Hu">Jian Hu</name><affiliation><nlm:affiliation>Department of Plant Pathology, China Agricultural University, Beijing 100193, China.</nlm:affiliation></affiliation></author><author><name sortKey="Pang, Zhili" sort="Pang, Zhili" uniqKey="Pang Z" first="Zhili" last="Pang">Zhili Pang</name></author><author><name sortKey="Bi, Yang" sort="Bi, Yang" uniqKey="Bi Y" first="Yang" last="Bi">Yang Bi</name></author><author><name sortKey="Shao, Jingpeng" sort="Shao, Jingpeng" uniqKey="Shao J" first="Jingpeng" last="Shao">Jingpeng Shao</name></author><author><name sortKey="Diao, Yongzhao" sort="Diao, Yongzhao" uniqKey="Diao Y" first="Yongzhao" last="Diao">Yongzhao Diao</name></author><author><name sortKey="Guo, Jianguo" sort="Guo, Jianguo" uniqKey="Guo J" first="Jianguo" last="Guo">Jianguo Guo</name></author><author><name sortKey="Liu, Yonggang" sort="Liu, Yonggang" uniqKey="Liu Y" first="Yonggang" last="Liu">Yonggang Liu</name></author><author><name sortKey="Lv, Heping" sort="Lv, Heping" uniqKey="Lv H" first="Heping" last="Lv">Heping Lv</name></author><author><name sortKey="Lamour, Kurt" sort="Lamour, Kurt" uniqKey="Lamour K" first="Kurt" last="Lamour">Kurt Lamour</name></author><author><name sortKey="Liu, Xili" sort="Liu, Xili" uniqKey="Liu X" first="Xili" last="Liu">Xili Liu</name></author></analytic><series><title level="j">Phytopathology</title><idno type="ISSN">0031-949X</idno><imprint><date when="2013" type="published">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Alanine (analogs & derivatives)</term><term>Alanine (pharmacology)</term><term>Capsicum (parasitology)</term><term>China (MeSH)</term><term>Fungicides, Industrial (pharmacology)</term><term>Genetic Markers (genetics)</term><term>Genetic Variation (MeSH)</term><term>Genome (genetics)</term><term>Genotype (MeSH)</term><term>Geography (MeSH)</term><term>Microsatellite Repeats (genetics)</term><term>Phytophthora (drug effects)</term><term>Phytophthora (genetics)</term><term>Phytophthora (isolation & purification)</term><term>Phytophthora (physiology)</term><term>Plant Diseases (parasitology)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analogs & derivatives" xml:lang="en"><term>Alanine</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Genetic Markers</term></keywords><keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Alanine</term><term>Fungicides, Industrial</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Genome</term><term>Microsatellite Repeats</term><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="parasitology" xml:lang="en"><term>Capsicum</term><term>Plant Diseases</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" xml:lang="en"><term>China</term><term>Genetic Variation</term><term>Genotype</term><term>Geography</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Phytophthora capsici causes significant loss to pepper production in China, and our objective was to investigate the population structure in Gansu province. Between 2007 and 2011, 279 isolates were collected from pepper at 24 locations. Isolates (or subsets) were assessed for simple sequence repeat (SSR) genotype, metalaxyl resistance, mating type, and physiological race using cultivars from the World Vegetable Center (AVRDC) and New Mexico recombinant inbred lines (NMRILs). The A1 and A2 mating types were recovered from nine locations and metalaxyl-resistant isolates from three locations. A total of 104 isolates tested on the AVRDC panel resolved five physiological races. None of 42 isolates tested on the NMRIL panel caused visible infection. SSR genotyping of 127 isolates revealed 59 unique genotypes, with 42 present as singletons and 17 having 2 to 13 isolates. Isolates with identical genotypes were recovered from multiple sites across multiple years and, in many cases, had different race types or metalaxyl sensitivities. Isolates clustered into three groups with each group having almost exclusively the A1 or A2 mating type. Overall it appears long-lived genetically diverse clonal lineages are dispersed across Gansu, outcrossing is rare, and functionally important variation exists within a clonal framework.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23550971</PMID><DateCompleted><Year>2014</Year><Month>04</Month><Day>03</Day></DateCompleted><DateRevised><Year>2016</Year><Month>11</Month><Day>25</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0031-949X</ISSN><JournalIssue CitedMedium="Print"><Volume>103</Volume><Issue>9</Issue><PubDate><Year>2013</Year><Month>Sep</Month></PubDate></JournalIssue><Title>Phytopathology</Title><ISOAbbreviation>Phytopathology</ISOAbbreviation></Journal><ArticleTitle>Genetically diverse long-lived clonal lineages of Phytophthora capsici from pepper in Gansu, China.</ArticleTitle><Pagination><MedlinePgn>920-6</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1094/PHYTO-01-13-0016-R</ELocationID><Abstract><AbstractText>Phytophthora capsici causes significant loss to pepper production in China, and our objective was to investigate the population structure in Gansu province. Between 2007 and 2011, 279 isolates were collected from pepper at 24 locations. Isolates (or subsets) were assessed for simple sequence repeat (SSR) genotype, metalaxyl resistance, mating type, and physiological race using cultivars from the World Vegetable Center (AVRDC) and New Mexico recombinant inbred lines (NMRILs). The A1 and A2 mating types were recovered from nine locations and metalaxyl-resistant isolates from three locations. A total of 104 isolates tested on the AVRDC panel resolved five physiological races. None of 42 isolates tested on the NMRIL panel caused visible infection. SSR genotyping of 127 isolates revealed 59 unique genotypes, with 42 present as singletons and 17 having 2 to 13 isolates. Isolates with identical genotypes were recovered from multiple sites across multiple years and, in many cases, had different race types or metalaxyl sensitivities. Isolates clustered into three groups with each group having almost exclusively the A1 or A2 mating type. Overall it appears long-lived genetically diverse clonal lineages are dispersed across Gansu, outcrossing is rare, and functionally important variation exists within a clonal framework.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Hu</LastName><ForeName>Jian</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, China Agricultural University, Beijing 100193, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pang</LastName><ForeName>Zhili</ForeName><Initials>Z</Initials></Author><Author ValidYN="Y"><LastName>Bi</LastName><ForeName>Yang</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Shao</LastName><ForeName>Jingpeng</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Diao</LastName><ForeName>Yongzhao</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Guo</LastName><ForeName>Jianguo</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Yonggang</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Lv</LastName><ForeName>Heping</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Lamour</LastName><ForeName>Kurt</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Xili</ForeName><Initials>X</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Phytopathology</MedlineTA><NlmUniqueID>9427222</NlmUniqueID><ISSNLinking>0031-949X</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005659">Fungicides, Industrial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005819">Genetic Markers</NameOfSubstance></Chemical><Chemical><RegistryNumber>16K4M187IF</RegistryNumber><NameOfSubstance UI="C028175">metalaxyl</NameOfSubstance></Chemical><Chemical><RegistryNumber>OF5P57N2ZX</RegistryNumber><NameOfSubstance UI="D000409">Alanine</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000409" MajorTopicYN="N">Alanine</DescriptorName><QualifierName UI="Q000031" MajorTopicYN="N">analogs & derivatives</QualifierName><QualifierName UI="Q000494" MajorTopicYN="N">pharmacology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002212" MajorTopicYN="N">Capsicum</DescriptorName><QualifierName UI="Q000469" MajorTopicYN="Y">parasitology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N">China</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005659" MajorTopicYN="N">Fungicides, Industrial</DescriptorName><QualifierName UI="Q000494" MajorTopicYN="N">pharmacology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005819" MajorTopicYN="N">Genetic Markers</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016678" MajorTopicYN="N">Genome</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005843" MajorTopicYN="N">Geography</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018895" MajorTopicYN="N">Microsatellite Repeats</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000469" MajorTopicYN="Y">parasitology</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2013</Year><Month>4</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2013</Year><Month>4</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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