A major natural genetic variation associated with root system architecture and plasticity improves waterlogging tolerance and yield in soybean.
Identifieur interne : 000810 ( Main/Corpus ); précédent : 000809; suivant : 000811A major natural genetic variation associated with root system architecture and plasticity improves waterlogging tolerance and yield in soybean.
Auteurs : Heng Ye ; Li Song ; Huatao Chen ; Babu Valliyodan ; Peng Cheng ; Liakat Ali ; Tri Vuong ; Chengjun Wu ; John Orlowski ; Blair Buckley ; Pengyin Chen ; J Grover Shannon ; Henry T. NguyenSource :
- Plant, cell & environment [ 1365-3040 ] ; 2018.
English descriptors
- KwdEn :
- MESH :
- chemical , metabolism : Indoleacetic Acids, Water.
- anatomy & histology : Plant Roots.
- genetics : Plant Roots, Soybeans.
- growth & development : Plant Roots.
- physiology : Soybeans.
- Alleles, Chromosome Mapping, Genetic Variation, Quantitative Trait Loci.
Abstract
Natural genetic variations in waterlogging tolerance are controlled by multiple genes mapped as quantitative trait loci (QTLs) in major crops, including soybean (Glycine max L.). In this research, 2 novel QTLs associated with waterlogging tolerance were mapped from an elite/exotic soybean cross. The subsequent research was focused on a major QTL (qWT_Gm03) with the tolerant allele from the exotic parent. This QTL was isolated into near-isogenic backgrounds, and its effects on waterlogging tolerance were validated in multiple environments. Fine mapping narrowed qWT_Gm03 into a genomic region of <380 Kbp excluding Rps1 gene for Phytophthora sojae resistance. The tolerant allele of qWT_Gm03 promotes root growth under nonstress conditions and favourable root plasticity under waterlogging, resulting in improved waterlogging tolerance, yield, and drought tolerance-related traits, possibly through more efficient water/nutrient uptakes. Meanwhile, involvement of auxin pathways was also identified in the regulation of waterlogging tolerance, as the genotypic differences of qWT_Gm03 in waterlogging tolerance and formation of adventitious/aerial roots can be complemented by an exogenous auxin-biosynthesis inhibitor. These findings provided genetic resources to address the urgent demand of improving waterlogging tolerance in soybean and revealed the determinant roles of root architecture and plasticity in the plant adaptation to waterlogging.
DOI: 10.1111/pce.13190
PubMed: 29520811
Links to Exploration step
pubmed:29520811Le document en format XML
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Nguyen</name><affiliation><nlm:affiliation>Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2018">2018</date><idno type="RBID">pubmed:29520811</idno><idno type="pmid">29520811</idno><idno type="doi">10.1111/pce.13190</idno><idno type="wicri:Area/Main/Corpus">000810</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000810</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">A major natural genetic variation associated with root system architecture and plasticity improves waterlogging tolerance and yield in soybean.</title><author><name sortKey="Ye, Heng" sort="Ye, Heng" uniqKey="Ye H" first="Heng" last="Ye">Heng Ye</name><affiliation><nlm:affiliation>Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Song, Li" sort="Song, Li" uniqKey="Song L" first="Li" last="Song">Li Song</name><affiliation><nlm:affiliation>Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Institutes of Agricultural Science and Technology Development, Yangzhou University, Yangzhou, 225009, China.</nlm:affiliation></affiliation></author><author><name sortKey="Chen, Huatao" sort="Chen, Huatao" uniqKey="Chen H" first="Huatao" last="Chen">Huatao Chen</name><affiliation><nlm:affiliation>Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China.</nlm:affiliation></affiliation></author><author><name sortKey="Valliyodan, Babu" sort="Valliyodan, Babu" uniqKey="Valliyodan B" first="Babu" last="Valliyodan">Babu Valliyodan</name><affiliation><nlm:affiliation>Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Cheng, Peng" sort="Cheng, Peng" uniqKey="Cheng P" first="Peng" last="Cheng">Peng Cheng</name><affiliation><nlm:affiliation>Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Ali, Liakat" sort="Ali, Liakat" uniqKey="Ali L" first="Liakat" last="Ali">Liakat Ali</name><affiliation><nlm:affiliation>Division of Plant Sciences, University of Missouri Fisher Delta Research Center, Portageville, MO, 63873, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Vuong, Tri" sort="Vuong, Tri" uniqKey="Vuong T" first="Tri" last="Vuong">Tri Vuong</name><affiliation><nlm:affiliation>Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Wu, Chengjun" sort="Wu, Chengjun" uniqKey="Wu C" first="Chengjun" last="Wu">Chengjun Wu</name><affiliation><nlm:affiliation>Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR, 72701, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Orlowski, John" sort="Orlowski, John" uniqKey="Orlowski J" first="John" last="Orlowski">John Orlowski</name><affiliation><nlm:affiliation>Delta Research and Extension Center, Department of Plant and Soil Sciences, Mississippi State University, Stoneville, MS, 38776, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Buckley, Blair" sort="Buckley, Blair" uniqKey="Buckley B" first="Blair" last="Buckley">Blair Buckley</name><affiliation><nlm:affiliation>Red River Research Station, Louisiana State University Agricultural Center, Baton Rouge, LA, 70803, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Chen, Pengyin" sort="Chen, Pengyin" uniqKey="Chen P" first="Pengyin" last="Chen">Pengyin Chen</name><affiliation><nlm:affiliation>Division of Plant Sciences, University of Missouri Fisher Delta Research Center, Portageville, MO, 63873, USA.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR, 72701, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Shannon, J Grover" sort="Shannon, J Grover" uniqKey="Shannon J" first="J Grover" last="Shannon">J Grover Shannon</name><affiliation><nlm:affiliation>Division of Plant Sciences, University of Missouri Fisher Delta Research Center, Portageville, MO, 63873, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Nguyen, Henry T" sort="Nguyen, Henry T" uniqKey="Nguyen H" first="Henry T" last="Nguyen">Henry T. Nguyen</name><affiliation><nlm:affiliation>Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Plant, cell & environment</title><idno type="eISSN">1365-3040</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Alleles (MeSH)</term><term>Chromosome Mapping (MeSH)</term><term>Genetic Variation (MeSH)</term><term>Indoleacetic Acids (metabolism)</term><term>Plant Roots (anatomy & histology)</term><term>Plant Roots (genetics)</term><term>Plant Roots (growth & development)</term><term>Quantitative Trait Loci (MeSH)</term><term>Soybeans (genetics)</term><term>Soybeans (physiology)</term><term>Water (metabolism)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Indoleacetic Acids</term><term>Water</term></keywords><keywords scheme="MESH" qualifier="anatomy & histology" xml:lang="en"><term>Plant Roots</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Plant Roots</term><term>Soybeans</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Plant Roots</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Soybeans</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Alleles</term><term>Chromosome Mapping</term><term>Genetic Variation</term><term>Quantitative Trait Loci</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Natural genetic variations in waterlogging tolerance are controlled by multiple genes mapped as quantitative trait loci (QTLs) in major crops, including soybean (Glycine max L.). In this research, 2 novel QTLs associated with waterlogging tolerance were mapped from an elite/exotic soybean cross. The subsequent research was focused on a major QTL (qWT_Gm03) with the tolerant allele from the exotic parent. This QTL was isolated into near-isogenic backgrounds, and its effects on waterlogging tolerance were validated in multiple environments. Fine mapping narrowed qWT_Gm03 into a genomic region of <380 Kbp excluding Rps1 gene for Phytophthora sojae resistance. The tolerant allele of qWT_Gm03 promotes root growth under nonstress conditions and favourable root plasticity under waterlogging, resulting in improved waterlogging tolerance, yield, and drought tolerance-related traits, possibly through more efficient water/nutrient uptakes. Meanwhile, involvement of auxin pathways was also identified in the regulation of waterlogging tolerance, as the genotypic differences of qWT_Gm03 in waterlogging tolerance and formation of adventitious/aerial roots can be complemented by an exogenous auxin-biosynthesis inhibitor. These findings provided genetic resources to address the urgent demand of improving waterlogging tolerance in soybean and revealed the determinant roles of root architecture and plasticity in the plant adaptation to waterlogging.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29520811</PMID><DateCompleted><Year>2019</Year><Month>05</Month><Day>10</Day></DateCompleted><DateRevised><Year>2019</Year><Month>05</Month><Day>10</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1365-3040</ISSN><JournalIssue CitedMedium="Internet"><Volume>41</Volume><Issue>9</Issue><PubDate><Year>2018</Year><Month>09</Month></PubDate></JournalIssue><Title>Plant, cell & environment</Title><ISOAbbreviation>Plant Cell Environ</ISOAbbreviation></Journal><ArticleTitle>A major natural genetic variation associated with root system architecture and plasticity improves waterlogging tolerance and yield in soybean.</ArticleTitle><Pagination><MedlinePgn>2169-2182</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/pce.13190</ELocationID><Abstract><AbstractText>Natural genetic variations in waterlogging tolerance are controlled by multiple genes mapped as quantitative trait loci (QTLs) in major crops, including soybean (Glycine max L.). In this research, 2 novel QTLs associated with waterlogging tolerance were mapped from an elite/exotic soybean cross. The subsequent research was focused on a major QTL (qWT_Gm03) with the tolerant allele from the exotic parent. This QTL was isolated into near-isogenic backgrounds, and its effects on waterlogging tolerance were validated in multiple environments. Fine mapping narrowed qWT_Gm03 into a genomic region of <380 Kbp excluding Rps1 gene for Phytophthora sojae resistance. The tolerant allele of qWT_Gm03 promotes root growth under nonstress conditions and favourable root plasticity under waterlogging, resulting in improved waterlogging tolerance, yield, and drought tolerance-related traits, possibly through more efficient water/nutrient uptakes. Meanwhile, involvement of auxin pathways was also identified in the regulation of waterlogging tolerance, as the genotypic differences of qWT_Gm03 in waterlogging tolerance and formation of adventitious/aerial roots can be complemented by an exogenous auxin-biosynthesis inhibitor. These findings provided genetic resources to address the urgent demand of improving waterlogging tolerance in soybean and revealed the determinant roles of root architecture and plasticity in the plant adaptation to waterlogging.</AbstractText><CopyrightInformation>© 2018 John Wiley & Sons Ltd.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ye</LastName><ForeName>Heng</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Song</LastName><ForeName>Li</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Institutes of Agricultural Science and Technology Development, Yangzhou University, Yangzhou, 225009, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Huatao</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Valliyodan</LastName><ForeName>Babu</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cheng</LastName><ForeName>Peng</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ali</LastName><ForeName>Liakat</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Division of Plant Sciences, University of Missouri Fisher Delta Research Center, Portageville, MO, 63873, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vuong</LastName><ForeName>Tri</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wu</LastName><ForeName>Chengjun</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR, 72701, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Orlowski</LastName><ForeName>John</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Delta Research and Extension Center, Department of Plant and Soil Sciences, Mississippi State University, Stoneville, MS, 38776, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Buckley</LastName><ForeName>Blair</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Red River Research Station, Louisiana State University Agricultural Center, Baton Rouge, LA, 70803, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Pengyin</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Division of Plant Sciences, University of Missouri Fisher Delta Research Center, Portageville, MO, 63873, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR, 72701, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shannon</LastName><ForeName>J Grover</ForeName><Initials>JG</Initials><AffiliationInfo><Affiliation>Division of Plant Sciences, University of Missouri Fisher Delta Research Center, Portageville, MO, 63873, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nguyen</LastName><ForeName>Henry T</ForeName><Initials>HT</Initials><Identifier Source="ORCID">0000-0002-7597-1800</Identifier><AffiliationInfo><Affiliation>Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><Agency>United Soybean Board</Agency><Country>International</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>04</Month><Day>16</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Plant Cell Environ</MedlineTA><NlmUniqueID>9309004</NlmUniqueID><ISSNLinking>0140-7791</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D007210">Indoleacetic Acids</NameOfSubstance></Chemical><Chemical><RegistryNumber>059QF0KO0R</RegistryNumber><NameOfSubstance UI="D014867">Water</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000483" MajorTopicYN="N">Alleles</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007210" MajorTopicYN="N">Indoleacetic Acids</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName><QualifierName UI="Q000033" MajorTopicYN="Y">anatomy & histology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D040641" MajorTopicYN="Y">Quantitative Trait Loci</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013025" MajorTopicYN="N">Soybeans</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014867" MajorTopicYN="N">Water</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">QTL mapping</Keyword><Keyword MajorTopicYN="Y">drought</Keyword><Keyword MajorTopicYN="Y">natural variations</Keyword><Keyword MajorTopicYN="Y">root system architecture</Keyword><Keyword MajorTopicYN="Y">waterlogging</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>12</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2018</Year><Month>03</Month><Day>02</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>03</Month><Day>05</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>3</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>5</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>3</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29520811</ArticleId><ArticleId 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