Genome-wide identification of long non-coding RNAs suggests a potential association with effector gene transcription in Phytophthora sojae.
Identifieur interne : 000773 ( Main/Corpus ); précédent : 000772; suivant : 000774Genome-wide identification of long non-coding RNAs suggests a potential association with effector gene transcription in Phytophthora sojae.
Auteurs : Yang Wang ; Wenwu Ye ; Yuanchao WangSource :
- Molecular plant pathology [ 1364-3703 ] ; 2018.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : RNA, Long Noncoding.
- genetics : Transcription, Genetic.
- pathogenicity : Oomycetes, Phytophthora.
Abstract
Numerous long non-coding RNAs (lncRNAs) identified and characterized in mammals, plants and fungi have been found to play critical regulatory roles in biological processes. However, little is known about the role of lncRNAs in oomycete plant pathogens, which cause devastating damage to the economy and ecosystems. We used strand-specific RNA sequencing (RNA-seq) to generate a computational pipeline to identify lncRNAs in Phytophthora sojae, a model oomycete plant pathogen. In total, 940 lncRNAs with 1010 isoforms were identified from RNA-seq data obtained from four representative stages of P. sojae. The lncRNAs had shorter transcript lengths, longer exon lengths, fewer numbers of exons, lower GC content and higher minimum free energy values compared with protein-coding genes. lncRNAs in P. sojae exhibited low sequence conservation amongst oomycetes and P. sojae isolates. Transcriptional data indicated that P. sojae lncRNAs tended to be transcribed in a stage-specific manner; representative lncRNAs were validated by semi-quantitative reverse transcription-polymerase chain reaction. Phytophthora sojae lncRNAs were concentrated in gene-sparse regions, and lncRNAs were associated with secreted protein and effector coding genes. The neighbouring genes of lncRNAs encoded various effector family members, and RNA-seq data revealed a correlation between the transcription level of lncRNAs and their neighbouring genes. Our results provide the first comprehensive identification of lncRNAs in oomycetes and suggest a potential association between lncRNAs and effector genes.
DOI: 10.1111/mpp.12692
PubMed: 29665235
PubMed Central: PMC6638102
Links to Exploration step
pubmed:29665235Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome-wide identification of long non-coding RNAs suggests a potential association with effector gene transcription in Phytophthora sojae.</title>
<author><name sortKey="Wang, Yang" sort="Wang, Yang" uniqKey="Wang Y" first="Yang" last="Wang">Yang Wang</name>
<affiliation><nlm:affiliation>Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China.</nlm:affiliation>
</affiliation>
<affiliation><nlm:affiliation>The Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education, Nanjing, Jiangsu 210095, China.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Ye, Wenwu" sort="Ye, Wenwu" uniqKey="Ye W" first="Wenwu" last="Ye">Wenwu Ye</name>
<affiliation><nlm:affiliation>Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China.</nlm:affiliation>
</affiliation>
<affiliation><nlm:affiliation>The Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education, Nanjing, Jiangsu 210095, China.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Wang, Yuanchao" sort="Wang, Yuanchao" uniqKey="Wang Y" first="Yuanchao" last="Wang">Yuanchao Wang</name>
<affiliation><nlm:affiliation>Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China.</nlm:affiliation>
</affiliation>
<affiliation><nlm:affiliation>The Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education, Nanjing, Jiangsu 210095, China.</nlm:affiliation>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2018">2018</date>
<idno type="RBID">pubmed:29665235</idno>
<idno type="pmid">29665235</idno>
<idno type="doi">10.1111/mpp.12692</idno>
<idno type="pmc">PMC6638102</idno>
<idno type="wicri:Area/Main/Corpus">000773</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000773</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Genome-wide identification of long non-coding RNAs suggests a potential association with effector gene transcription in Phytophthora sojae.</title>
<author><name sortKey="Wang, Yang" sort="Wang, Yang" uniqKey="Wang Y" first="Yang" last="Wang">Yang Wang</name>
<affiliation><nlm:affiliation>Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China.</nlm:affiliation>
</affiliation>
<affiliation><nlm:affiliation>The Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education, Nanjing, Jiangsu 210095, China.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Ye, Wenwu" sort="Ye, Wenwu" uniqKey="Ye W" first="Wenwu" last="Ye">Wenwu Ye</name>
<affiliation><nlm:affiliation>Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China.</nlm:affiliation>
</affiliation>
<affiliation><nlm:affiliation>The Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education, Nanjing, Jiangsu 210095, China.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Wang, Yuanchao" sort="Wang, Yuanchao" uniqKey="Wang Y" first="Yuanchao" last="Wang">Yuanchao Wang</name>
<affiliation><nlm:affiliation>Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China.</nlm:affiliation>
</affiliation>
<affiliation><nlm:affiliation>The Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education, Nanjing, Jiangsu 210095, China.</nlm:affiliation>
</affiliation>
</author>
</analytic>
<series><title level="j">Molecular plant pathology</title>
<idno type="eISSN">1364-3703</idno>
<imprint><date when="2018" type="published">2018</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Oomycetes (pathogenicity)</term>
<term>Phytophthora (pathogenicity)</term>
<term>RNA, Long Noncoding (genetics)</term>
<term>Transcription, Genetic (genetics)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Long Noncoding</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Transcription, Genetic</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Oomycetes</term>
<term>Phytophthora</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Numerous long non-coding RNAs (lncRNAs) identified and characterized in mammals, plants and fungi have been found to play critical regulatory roles in biological processes. However, little is known about the role of lncRNAs in oomycete plant pathogens, which cause devastating damage to the economy and ecosystems. We used strand-specific RNA sequencing (RNA-seq) to generate a computational pipeline to identify lncRNAs in Phytophthora sojae, a model oomycete plant pathogen. In total, 940 lncRNAs with 1010 isoforms were identified from RNA-seq data obtained from four representative stages of P. sojae. The lncRNAs had shorter transcript lengths, longer exon lengths, fewer numbers of exons, lower GC content and higher minimum free energy values compared with protein-coding genes. lncRNAs in P. sojae exhibited low sequence conservation amongst oomycetes and P. sojae isolates. Transcriptional data indicated that P. sojae lncRNAs tended to be transcribed in a stage-specific manner; representative lncRNAs were validated by semi-quantitative reverse transcription-polymerase chain reaction. Phytophthora sojae lncRNAs were concentrated in gene-sparse regions, and lncRNAs were associated with secreted protein and effector coding genes. The neighbouring genes of lncRNAs encoded various effector family members, and RNA-seq data revealed a correlation between the transcription level of lncRNAs and their neighbouring genes. Our results provide the first comprehensive identification of lncRNAs in oomycetes and suggest a potential association between lncRNAs and effector genes.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29665235</PMID>
<DateCompleted><Year>2019</Year>
<Month>03</Month>
<Day>04</Day>
</DateCompleted>
<DateRevised><Year>2020</Year>
<Month>02</Month>
<Day>25</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1364-3703</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>19</Volume>
<Issue>9</Issue>
<PubDate><Year>2018</Year>
<Month>09</Month>
</PubDate>
</JournalIssue>
<Title>Molecular plant pathology</Title>
<ISOAbbreviation>Mol Plant Pathol</ISOAbbreviation>
</Journal>
<ArticleTitle>Genome-wide identification of long non-coding RNAs suggests a potential association with effector gene transcription in Phytophthora sojae.</ArticleTitle>
<Pagination><MedlinePgn>2177-2186</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1111/mpp.12692</ELocationID>
<Abstract><AbstractText>Numerous long non-coding RNAs (lncRNAs) identified and characterized in mammals, plants and fungi have been found to play critical regulatory roles in biological processes. However, little is known about the role of lncRNAs in oomycete plant pathogens, which cause devastating damage to the economy and ecosystems. We used strand-specific RNA sequencing (RNA-seq) to generate a computational pipeline to identify lncRNAs in Phytophthora sojae, a model oomycete plant pathogen. In total, 940 lncRNAs with 1010 isoforms were identified from RNA-seq data obtained from four representative stages of P. sojae. The lncRNAs had shorter transcript lengths, longer exon lengths, fewer numbers of exons, lower GC content and higher minimum free energy values compared with protein-coding genes. lncRNAs in P. sojae exhibited low sequence conservation amongst oomycetes and P. sojae isolates. Transcriptional data indicated that P. sojae lncRNAs tended to be transcribed in a stage-specific manner; representative lncRNAs were validated by semi-quantitative reverse transcription-polymerase chain reaction. Phytophthora sojae lncRNAs were concentrated in gene-sparse regions, and lncRNAs were associated with secreted protein and effector coding genes. The neighbouring genes of lncRNAs encoded various effector family members, and RNA-seq data revealed a correlation between the transcription level of lncRNAs and their neighbouring genes. Our results provide the first comprehensive identification of lncRNAs in oomycetes and suggest a potential association between lncRNAs and effector genes.</AbstractText>
<CopyrightInformation>© 2018 BSPP and John Wiley & Sons Ltd.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Yang</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>The Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education, Nanjing, Jiangsu 210095, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ye</LastName>
<ForeName>Wenwu</ForeName>
<Initials>W</Initials>
<Identifier Source="ORCID">0000-0001-7347-8935</Identifier>
<AffiliationInfo><Affiliation>Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>The Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education, Nanjing, Jiangsu 210095, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Yuanchao</ForeName>
<Initials>Y</Initials>
<Identifier Source="ORCID">0000-0001-5803-5343</Identifier>
<AffiliationInfo><Affiliation>Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>The Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education, Nanjing, Jiangsu 210095, China.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2018</Year>
<Month>07</Month>
<Day>17</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Mol Plant Pathol</MedlineTA>
<NlmUniqueID>100954969</NlmUniqueID>
<ISSNLinking>1364-3703</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D062085">RNA, Long Noncoding</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D009868" MajorTopicYN="N">Oomycetes</DescriptorName>
<QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName>
<QualifierName UI="Q000472" MajorTopicYN="Y">pathogenicity</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D062085" MajorTopicYN="N">RNA, Long Noncoding</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014158" MajorTopicYN="N">Transcription, Genetic</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Phytophthora
</Keyword>
<Keyword MajorTopicYN="Y">RNA-seq</Keyword>
<Keyword MajorTopicYN="Y">effector</Keyword>
<Keyword MajorTopicYN="Y">long non-coding RNAs</Keyword>
<Keyword MajorTopicYN="Y">transcriptional regulation</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year>
<Month>01</Month>
<Day>11</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="revised"><Year>2018</Year>
<Month>03</Month>
<Day>14</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2018</Year>
<Month>04</Month>
<Day>12</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2018</Year>
<Month>4</Month>
<Day>18</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2019</Year>
<Month>3</Month>
<Day>5</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2018</Year>
<Month>4</Month>
<Day>18</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">29665235</ArticleId>
<ArticleId IdType="doi">10.1111/mpp.12692</ArticleId>
<ArticleId IdType="pmc">PMC6638102</ArticleId>
</ArticleIdList>
<ReferenceList><Reference><Citation>J Mol Diagn. 2003 May;5(2):73-81</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12707371</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2003 Jun 13;300(5626):1703-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12805537</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Plant Microbe Interact. 2004 Oct;17(10):1051-62</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15497398</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Biol. 2005;6(4):R33</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15833120</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Annu Rev Phytopathol. 2006;44:41-60</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16448329</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2006 Sep 1;313(5791):1261-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16946064</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Microbiology. 2007 Mar;153(Pt 3):747-59</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17322195</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4874-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18344324</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Rev Genet. 2009 Mar;10(3):155-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19188922</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genes Dev. 2009 Jul 1;23(13):1494-504</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19571179</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Rev Mol Cell Biol. 2009 Sep;10(9):637-43</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19638999</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nature. 2009 Sep 17;461(7262):393-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19741609</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2009 Oct 27;106(43):18321-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19805129</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2010 Feb 12;327(5967):804-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20150482</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Biol. 2010;11(7):R73</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20626842</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2010 Dec 10;330(6010):1549-1551</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21148394</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Cell. 2011 Jun;23(6):2064-86</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21653195</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Plant Microbe Interact. 2011 Dec;24(12):1530-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21848399</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Trends Plant Sci. 2012 Jan;17(1):16-21</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22104407</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Plant Microbe Interact. 2012 Jul;25(7):896-909</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22397404</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2012;7(12):e51399</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23272103</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Rev Genet. 2013 Feb;14(2):100-12</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23329111</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Microbiol. 2013 Jul;89(1):29-51</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23650872</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>RNA Biol. 2013 Jun;10(6):925-33</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23696037</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Microbiol Biotechnol. 2013 Sep;97(18):7989-97</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23948725</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Biol. 2014 Feb 27;15(2):R40</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24576388</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2014 Aug 1;30(15):2114-20</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24695404</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Curr Opin Genet Dev. 2014 Aug;27:48-53</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24852186</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Plant Pathol. 2015 May;16(4):413-34</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25178392</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Elife. 2014 Sep 16;3:e03523</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25233276</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Biol. 2014 Dec 03;15(12):512</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25517485</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Cell Rep. 2015 Apr 7;11(1):137-48</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25843708</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Curr Opin Genet Dev. 2015 Dec;35:57-65</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26451981</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Genomics. 2015 Oct 19;16:815</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26481460</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2016 Mar;209(4):1442-55</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26494192</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS Genet. 2015 Nov 20;11(11):e1005692</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26588844</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2016 Aug;211(3):993-1007</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27010746</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Plant Microbe Interact. 2016 Jul;29(7):573-83</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27183038</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Front Microbiol. 2016 Sep 30;7:1547</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27746768</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Microbiol. 2017 Mar;103(5):745-763</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27888605</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Front Plant Sci. 2016 Dec 22;7:1938</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28066490</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS Pathog. 2017 Apr 20;13(4):e1006241</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28426760</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Genomics. 2017 May 2;18(1):340</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28464849</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Front Microbiol. 2017 May 02;8:773</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28512457</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>mSphere. 2017 Nov 22;2(6):null</Citation>
<ArticleIdList><ArticleId IdType="pubmed">29202039</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PhytophthoraV1/Data/Main/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000773 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd -nk 000773 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Bois |area= PhytophthoraV1 |flux= Main |étape= Corpus |type= RBID |clé= pubmed:29665235 |texte= Genome-wide identification of long non-coding RNAs suggests a potential association with effector gene transcription in Phytophthora sojae. }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Corpus/RBID.i -Sk "pubmed:29665235" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd \ | NlmPubMed2Wicri -a PhytophthoraV1
![]() | This area was generated with Dilib version V0.6.38. | ![]() |