RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members.
Identifieur interne : 000286 ( Main/Exploration ); précédent : 000285; suivant : 000287RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members.
Auteurs : Rays H Y. Jiang [États-Unis] ; Sucheta Tripathy ; Francine Govers ; Brett M. TylerSource :
- Proceedings of the National Academy of Sciences of the United States of America [ 1091-6490 ] ; 2008.
Descripteurs français
- KwdFr :
- Données de séquences moléculaires (MeSH), Génome (MeSH), Motifs d'acides aminés (MeSH), Phytophthora (), Phytophthora (génétique), Phytophthora (pathogénicité), Polymorphisme génétique (MeSH), Protéines d'algue (), Réarrangement des gènes (MeSH), Synténie (MeSH), Séquence conservée (MeSH), Séquence d'acides aminés (MeSH), Virulence (MeSH), Évolution moléculaire (MeSH).
- MESH :
English descriptors
- KwdEn :
- Algal Proteins (chemistry), Amino Acid Motifs (MeSH), Amino Acid Sequence (MeSH), Conserved Sequence (MeSH), Evolution, Molecular (MeSH), Gene Rearrangement (MeSH), Genome (MeSH), Molecular Sequence Data (MeSH), Phytophthora (chemistry), Phytophthora (genetics), Phytophthora (pathogenicity), Polymorphism, Genetic (MeSH), Synteny (MeSH), Virulence (MeSH).
- MESH :
- chemical , chemistry : Algal Proteins.
- chemistry : Phytophthora.
- genetics : Phytophthora.
- pathogenicity : Phytophthora.
- Amino Acid Motifs, Amino Acid Sequence, Conserved Sequence, Evolution, Molecular, Gene Rearrangement, Genome, Molecular Sequence Data, Polymorphism, Genetic, Synteny, Virulence.
Abstract
Pathogens secrete effector molecules that facilitate the infection of their hosts. A number of effectors identified in plant pathogenic Phytophthora species possess N-terminal motifs (RXLR-dEER) required for targeting these effectors into host cells. Here, we bioinformatically identify >370 candidate effector genes in each of the genomes of P. sojae and P. ramorum. A single superfamily, termed avirulence homolog (Avh) genes, accounts for most of the effectors. The Avh proteins show extensive sequence divergence but are all related and likely evolved from a common ancestor by rapid duplication and divergence. More than half of the Avh proteins contain conserved C-terminal motifs (termed W, Y, and L) that are usually arranged as a module that can be repeated up to eight times. The Avh genes belong to the most rapidly evolving part of the genome, and they are nearly always located at synteny breakpoints. The superfamily includes all experimentally identified oomycete effector and avirulence genes, and its rapid pace of evolution is consistent with a role for Avh proteins in interaction with plant hosts.
DOI: 10.1073/pnas.0709303105
PubMed: 18344324
PubMed Central: PMC2290801
Affiliations:
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Jiang</name><affiliation wicri:level="2"><nlm:affiliation>Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061</wicri:regionArea><placeName><region type="state">Virginie</region></placeName></affiliation></author><author><name sortKey="Tripathy, Sucheta" sort="Tripathy, Sucheta" uniqKey="Tripathy S" first="Sucheta" last="Tripathy">Sucheta Tripathy</name></author><author><name sortKey="Govers, Francine" sort="Govers, Francine" uniqKey="Govers F" first="Francine" last="Govers">Francine Govers</name></author><author><name sortKey="Tyler, Brett M" sort="Tyler, Brett M" uniqKey="Tyler B" first="Brett M" last="Tyler">Brett M. 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Tyler</name></author></analytic><series><title level="j">Proceedings of the National Academy of Sciences of the United States of America</title><idno type="eISSN">1091-6490</idno><imprint><date when="2008" type="published">2008</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Algal Proteins (chemistry)</term><term>Amino Acid Motifs (MeSH)</term><term>Amino Acid Sequence (MeSH)</term><term>Conserved Sequence (MeSH)</term><term>Evolution, Molecular (MeSH)</term><term>Gene Rearrangement (MeSH)</term><term>Genome (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Phytophthora (chemistry)</term><term>Phytophthora (genetics)</term><term>Phytophthora (pathogenicity)</term><term>Polymorphism, Genetic (MeSH)</term><term>Synteny (MeSH)</term><term>Virulence (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Données de séquences moléculaires (MeSH)</term><term>Génome (MeSH)</term><term>Motifs d'acides aminés (MeSH)</term><term>Phytophthora ()</term><term>Phytophthora (génétique)</term><term>Phytophthora (pathogénicité)</term><term>Polymorphisme génétique (MeSH)</term><term>Protéines d'algue ()</term><term>Réarrangement des gènes (MeSH)</term><term>Synténie (MeSH)</term><term>Séquence conservée (MeSH)</term><term>Séquence d'acides aminés (MeSH)</term><term>Virulence (MeSH)</term><term>Évolution moléculaire (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Algal Proteins</term></keywords><keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Phytophthora</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Motifs</term><term>Amino Acid Sequence</term><term>Conserved Sequence</term><term>Evolution, Molecular</term><term>Gene Rearrangement</term><term>Genome</term><term>Molecular Sequence Data</term><term>Polymorphism, Genetic</term><term>Synteny</term><term>Virulence</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Données de séquences moléculaires</term><term>Génome</term><term>Motifs d'acides aminés</term><term>Phytophthora</term><term>Polymorphisme génétique</term><term>Protéines d'algue</term><term>Réarrangement des gènes</term><term>Synténie</term><term>Séquence conservée</term><term>Séquence d'acides aminés</term><term>Virulence</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Pathogens secrete effector molecules that facilitate the infection of their hosts. A number of effectors identified in plant pathogenic Phytophthora species possess N-terminal motifs (RXLR-dEER) required for targeting these effectors into host cells. Here, we bioinformatically identify >370 candidate effector genes in each of the genomes of P. sojae and P. ramorum. A single superfamily, termed avirulence homolog (Avh) genes, accounts for most of the effectors. The Avh proteins show extensive sequence divergence but are all related and likely evolved from a common ancestor by rapid duplication and divergence. More than half of the Avh proteins contain conserved C-terminal motifs (termed W, Y, and L) that are usually arranged as a module that can be repeated up to eight times. The Avh genes belong to the most rapidly evolving part of the genome, and they are nearly always located at synteny breakpoints. The superfamily includes all experimentally identified oomycete effector and avirulence genes, and its rapid pace of evolution is consistent with a role for Avh proteins in interaction with plant hosts.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">18344324</PMID><DateCompleted><Year>2008</Year><Month>04</Month><Day>22</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1091-6490</ISSN><JournalIssue CitedMedium="Internet"><Volume>105</Volume><Issue>12</Issue><PubDate><Year>2008</Year><Month>Mar</Month><Day>25</Day></PubDate></JournalIssue><Title>Proceedings of the National Academy of Sciences of the United States of America</Title><ISOAbbreviation>Proc Natl Acad Sci U S A</ISOAbbreviation></Journal><ArticleTitle>RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members.</ArticleTitle><Pagination><MedlinePgn>4874-9</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1073/pnas.0709303105</ELocationID><Abstract><AbstractText>Pathogens secrete effector molecules that facilitate the infection of their hosts. A number of effectors identified in plant pathogenic Phytophthora species possess N-terminal motifs (RXLR-dEER) required for targeting these effectors into host cells. Here, we bioinformatically identify >370 candidate effector genes in each of the genomes of P. sojae and P. ramorum. A single superfamily, termed avirulence homolog (Avh) genes, accounts for most of the effectors. The Avh proteins show extensive sequence divergence but are all related and likely evolved from a common ancestor by rapid duplication and divergence. More than half of the Avh proteins contain conserved C-terminal motifs (termed W, Y, and L) that are usually arranged as a module that can be repeated up to eight times. The Avh genes belong to the most rapidly evolving part of the genome, and they are nearly always located at synteny breakpoints. The superfamily includes all experimentally identified oomycete effector and avirulence genes, and its rapid pace of evolution is consistent with a role for Avh proteins in interaction with plant hosts.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Jiang</LastName><ForeName>Rays H Y</ForeName><Initials>RH</Initials><AffiliationInfo><Affiliation>Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tripathy</LastName><ForeName>Sucheta</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Govers</LastName><ForeName>Francine</ForeName><Initials>F</Initials></Author><Author ValidYN="Y"><LastName>Tyler</LastName><ForeName>Brett M</ForeName><Initials>BM</Initials></Author></AuthorList><Language>eng</Language><DataBankList 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IdType="pubmed">11751241</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>Virginie</li></region></list><tree><noCountry><name sortKey="Govers, Francine" sort="Govers, Francine" uniqKey="Govers F" first="Francine" last="Govers">Francine Govers</name><name sortKey="Tripathy, Sucheta" sort="Tripathy, Sucheta" uniqKey="Tripathy S" first="Sucheta" last="Tripathy">Sucheta Tripathy</name><name sortKey="Tyler, Brett M" sort="Tyler, Brett M" uniqKey="Tyler B" first="Brett M" last="Tyler">Brett M. Tyler</name></noCountry><country name="États-Unis"><region name="Virginie"><name sortKey="Jiang, Rays H Y" sort="Jiang, Rays H Y" uniqKey="Jiang R" first="Rays H Y" last="Jiang">Rays H Y. Jiang</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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