Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium.
Identifieur interne : 000576 ( Main/Exploration ); précédent : 000575; suivant : 000577Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium.
Auteurs : Amber Vanden Wymelenberg [États-Unis] ; Jill Gaskell ; Michael Mozuch ; Grzegorz Sabat ; John Ralph ; Oleksandr Skyba ; Shawn D. Mansfield ; Robert A. Blanchette ; Diego Martinez ; Igor Grigoriev ; Philip J. Kersten ; Dan CullenSource :
- Applied and environmental microbiology [ 1098-5336 ] ; 2010.
Descripteurs français
- KwdFr :
- Analyse de profil d'expression de gènes (MeSH), Bois (microbiologie), Bois (métabolisme), Cellulose (métabolisme), Chromatographie en phase liquide (MeSH), Coriolaceae (composition chimique), Coriolaceae (génétique), Glycosyltransferase (métabolisme), Oxidoreductases (métabolisme), Phanerochaete (composition chimique), Phanerochaete (génétique), Polyosides (métabolisme), Protéines fongiques (analyse), Protéines fongiques (métabolisme), Protéome (MeSH), Spectrométrie de masse en tandem (MeSH).
- MESH :
- analyse : Protéines fongiques.
- composition chimique : Coriolaceae, Phanerochaete.
- génétique : Coriolaceae, Phanerochaete.
- microbiologie : Bois.
- métabolisme : Bois, Cellulose, Glycosyltransferase, Oxidoreductases, Polyosides, Protéines fongiques.
- Analyse de profil d'expression de gènes, Chromatographie en phase liquide, Protéome, Spectrométrie de masse en tandem.
English descriptors
- KwdEn :
- Cellulose (metabolism), Chromatography, Liquid (MeSH), Coriolaceae (chemistry), Coriolaceae (genetics), Fungal Proteins (analysis), Fungal Proteins (metabolism), Gene Expression Profiling (MeSH), Glycosyltransferases (metabolism), Oxidoreductases (metabolism), Phanerochaete (chemistry), Phanerochaete (genetics), Polysaccharides (metabolism), Proteome (MeSH), Tandem Mass Spectrometry (MeSH), Wood (metabolism), Wood (microbiology).
- MESH :
- chemical , analysis : Fungal Proteins.
- chemical , metabolism : Cellulose, Fungal Proteins, Glycosyltransferases, Oxidoreductases, Polysaccharides.
- chemistry : Coriolaceae, Phanerochaete.
- genetics : Coriolaceae, Phanerochaete.
- metabolism : Wood.
- microbiology : Wood.
- Chromatography, Liquid, Gene Expression Profiling, Proteome, Tandem Mass Spectrometry.
Abstract
Cellulose degradation by brown rot fungi, such as Postia placenta, is poorly understood relative to the phylogenetically related white rot basidiomycete, Phanerochaete chrysosporium. To elucidate the number, structure, and regulation of genes involved in lignocellulosic cell wall attack, secretome and transcriptome analyses were performed on both wood decay fungi cultured for 5 days in media containing ball-milled aspen or glucose as the sole carbon source. Using liquid chromatography-tandem mass spectrometry (LC-MS/MS), a total of 67 and 79 proteins were identified in the extracellular fluids of P. placenta and P. chrysosporium cultures, respectively. Viewed together with transcript profiles, P. chrysosporium employs an array of extracellular glycosyl hydrolases to simultaneously attack cellulose and hemicelluloses. In contrast, under these same conditions, P. placenta secretes an array of hemicellulases but few potential cellulases. The two species display distinct expression patterns for oxidoreductase-encoding genes. In P. placenta, these patterns are consistent with an extracellular Fenton system and include the upregulation of genes involved in iron acquisition, in the synthesis of low-molecular-weight quinones, and possibly in redox cycling reactions.
DOI: 10.1128/AEM.00058-10
PubMed: 20400566
PubMed Central: PMC2876446
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Mansfield</name></author><author><name sortKey="Blanchette, Robert A" sort="Blanchette, Robert A" uniqKey="Blanchette R" first="Robert A" last="Blanchette">Robert A. Blanchette</name></author><author><name sortKey="Martinez, Diego" sort="Martinez, Diego" uniqKey="Martinez D" first="Diego" last="Martinez">Diego Martinez</name></author><author><name sortKey="Grigoriev, Igor" sort="Grigoriev, Igor" uniqKey="Grigoriev I" first="Igor" last="Grigoriev">Igor Grigoriev</name></author><author><name sortKey="Kersten, Philip J" sort="Kersten, Philip J" uniqKey="Kersten P" first="Philip J" last="Kersten">Philip J. Kersten</name></author><author><name sortKey="Cullen, Dan" sort="Cullen, Dan" uniqKey="Cullen D" first="Dan" last="Cullen">Dan Cullen</name></author></analytic><series><title level="j">Applied and environmental microbiology</title><idno type="eISSN">1098-5336</idno><imprint><date when="2010" type="published">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Cellulose (metabolism)</term><term>Chromatography, Liquid (MeSH)</term><term>Coriolaceae (chemistry)</term><term>Coriolaceae (genetics)</term><term>Fungal Proteins (analysis)</term><term>Fungal Proteins (metabolism)</term><term>Gene Expression Profiling (MeSH)</term><term>Glycosyltransferases (metabolism)</term><term>Oxidoreductases (metabolism)</term><term>Phanerochaete (chemistry)</term><term>Phanerochaete (genetics)</term><term>Polysaccharides (metabolism)</term><term>Proteome (MeSH)</term><term>Tandem Mass Spectrometry (MeSH)</term><term>Wood (metabolism)</term><term>Wood (microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Bois (microbiologie)</term><term>Bois (métabolisme)</term><term>Cellulose (métabolisme)</term><term>Chromatographie en phase liquide (MeSH)</term><term>Coriolaceae (composition chimique)</term><term>Coriolaceae (génétique)</term><term>Glycosyltransferase (métabolisme)</term><term>Oxidoreductases (métabolisme)</term><term>Phanerochaete (composition chimique)</term><term>Phanerochaete (génétique)</term><term>Polyosides (métabolisme)</term><term>Protéines fongiques (analyse)</term><term>Protéines fongiques (métabolisme)</term><term>Protéome (MeSH)</term><term>Spectrométrie de masse en tandem (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>Fungal Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Cellulose</term><term>Fungal Proteins</term><term>Glycosyltransferases</term><term>Oxidoreductases</term><term>Polysaccharides</term></keywords><keywords scheme="MESH" qualifier="analyse" xml:lang="fr"><term>Protéines fongiques</term></keywords><keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Coriolaceae</term><term>Phanerochaete</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Coriolaceae</term><term>Phanerochaete</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coriolaceae</term><term>Phanerochaete</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Coriolaceae</term><term>Phanerochaete</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Wood</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Bois</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Wood</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Bois</term><term>Cellulose</term><term>Glycosyltransferase</term><term>Oxidoreductases</term><term>Polyosides</term><term>Protéines fongiques</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Chromatography, Liquid</term><term>Gene Expression Profiling</term><term>Proteome</term><term>Tandem Mass Spectrometry</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term><term>Chromatographie en phase liquide</term><term>Protéome</term><term>Spectrométrie de masse en tandem</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Cellulose degradation by brown rot fungi, such as Postia placenta, is poorly understood relative to the phylogenetically related white rot basidiomycete, Phanerochaete chrysosporium. To elucidate the number, structure, and regulation of genes involved in lignocellulosic cell wall attack, secretome and transcriptome analyses were performed on both wood decay fungi cultured for 5 days in media containing ball-milled aspen or glucose as the sole carbon source. Using liquid chromatography-tandem mass spectrometry (LC-MS/MS), a total of 67 and 79 proteins were identified in the extracellular fluids of P. placenta and P. chrysosporium cultures, respectively. Viewed together with transcript profiles, P. chrysosporium employs an array of extracellular glycosyl hydrolases to simultaneously attack cellulose and hemicelluloses. In contrast, under these same conditions, P. placenta secretes an array of hemicellulases but few potential cellulases. The two species display distinct expression patterns for oxidoreductase-encoding genes. In P. placenta, these patterns are consistent with an extracellular Fenton system and include the upregulation of genes involved in iron acquisition, in the synthesis of low-molecular-weight quinones, and possibly in redox cycling reactions.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">20400566</PMID><DateCompleted><Year>2010</Year><Month>09</Month><Day>28</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>01</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1098-5336</ISSN><JournalIssue CitedMedium="Internet"><Volume>76</Volume><Issue>11</Issue><PubDate><Year>2010</Year><Month>Jun</Month></PubDate></JournalIssue><Title>Applied and environmental microbiology</Title><ISOAbbreviation>Appl Environ Microbiol</ISOAbbreviation></Journal><ArticleTitle>Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium.</ArticleTitle><Pagination><MedlinePgn>3599-610</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1128/AEM.00058-10</ELocationID><Abstract><AbstractText>Cellulose degradation by brown rot fungi, such as Postia placenta, is poorly understood relative to the phylogenetically related white rot basidiomycete, Phanerochaete chrysosporium. To elucidate the number, structure, and regulation of genes involved in lignocellulosic cell wall attack, secretome and transcriptome analyses were performed on both wood decay fungi cultured for 5 days in media containing ball-milled aspen or glucose as the sole carbon source. Using liquid chromatography-tandem mass spectrometry (LC-MS/MS), a total of 67 and 79 proteins were identified in the extracellular fluids of P. placenta and P. chrysosporium cultures, respectively. Viewed together with transcript profiles, P. chrysosporium employs an array of extracellular glycosyl hydrolases to simultaneously attack cellulose and hemicelluloses. In contrast, under these same conditions, P. placenta secretes an array of hemicellulases but few potential cellulases. The two species display distinct expression patterns for oxidoreductase-encoding genes. In P. placenta, these patterns are consistent with an extracellular Fenton system and include the upregulation of genes involved in iron acquisition, in the synthesis of low-molecular-weight quinones, and possibly in redox cycling reactions.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Vanden Wymelenberg</LastName><ForeName>Amber</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Forest Products Lab, One Gifford Pinchot Drive, Madison, WI 53726, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gaskell</LastName><ForeName>Jill</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Mozuch</LastName><ForeName>Michael</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Sabat</LastName><ForeName>Grzegorz</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Ralph</LastName><ForeName>John</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Skyba</LastName><ForeName>Oleksandr</ForeName><Initials>O</Initials></Author><Author ValidYN="Y"><LastName>Mansfield</LastName><ForeName>Shawn D</ForeName><Initials>SD</Initials></Author><Author ValidYN="Y"><LastName>Blanchette</LastName><ForeName>Robert A</ForeName><Initials>RA</Initials></Author><Author ValidYN="Y"><LastName>Martinez</LastName><ForeName>Diego</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Grigoriev</LastName><ForeName>Igor</ForeName><Initials>I</Initials></Author><Author ValidYN="Y"><LastName>Kersten</LastName><ForeName>Philip J</ForeName><Initials>PJ</Initials></Author><Author ValidYN="Y"><LastName>Cullen</LastName><ForeName>Dan</ForeName><Initials>D</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D003160">Comparative Study</PublicationType><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2010</Year><Month>04</Month><Day>16</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Appl Environ Microbiol</MedlineTA><NlmUniqueID>7605801</NlmUniqueID><ISSNLinking>0099-2240</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005656">Fungal Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D011134">Polysaccharides</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D020543">Proteome</NameOfSubstance></Chemical><Chemical><RegistryNumber>8024-50-8</RegistryNumber><NameOfSubstance UI="C007916">hemicellulose</NameOfSubstance></Chemical><Chemical><RegistryNumber>9004-34-6</RegistryNumber><NameOfSubstance UI="D002482">Cellulose</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 1.-</RegistryNumber><NameOfSubstance UI="D010088">Oxidoreductases</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 2.4.-</RegistryNumber><NameOfSubstance UI="D016695">Glycosyltransferases</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D002482" MajorTopicYN="N">Cellulose</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002853" MajorTopicYN="N">Chromatography, Liquid</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D055453" MajorTopicYN="N">Coriolaceae</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005656" MajorTopicYN="N">Fungal Proteins</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="Y">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016695" MajorTopicYN="N">Glycosyltransferases</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010088" MajorTopicYN="N">Oxidoreductases</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020075" MajorTopicYN="N">Phanerochaete</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011134" MajorTopicYN="N">Polysaccharides</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020543" MajorTopicYN="Y">Proteome</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D053719" MajorTopicYN="N">Tandem Mass Spectrometry</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014934" MajorTopicYN="N">Wood</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2010</Year><Month>4</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2010</Year><Month>4</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2010</Year><Month>9</Month><Day>30</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">20400566</ArticleId><ArticleId 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Blanchette</name><name sortKey="Cullen, Dan" sort="Cullen, Dan" uniqKey="Cullen D" first="Dan" last="Cullen">Dan Cullen</name><name sortKey="Gaskell, Jill" sort="Gaskell, Jill" uniqKey="Gaskell J" first="Jill" last="Gaskell">Jill Gaskell</name><name sortKey="Grigoriev, Igor" sort="Grigoriev, Igor" uniqKey="Grigoriev I" first="Igor" last="Grigoriev">Igor Grigoriev</name><name sortKey="Kersten, Philip J" sort="Kersten, Philip J" uniqKey="Kersten P" first="Philip J" last="Kersten">Philip J. Kersten</name><name sortKey="Mansfield, Shawn D" sort="Mansfield, Shawn D" uniqKey="Mansfield S" first="Shawn D" last="Mansfield">Shawn D. Mansfield</name><name sortKey="Martinez, Diego" sort="Martinez, Diego" uniqKey="Martinez D" first="Diego" last="Martinez">Diego Martinez</name><name sortKey="Mozuch, Michael" sort="Mozuch, Michael" uniqKey="Mozuch M" first="Michael" last="Mozuch">Michael Mozuch</name><name sortKey="Ralph, John" sort="Ralph, John" uniqKey="Ralph J" first="John" last="Ralph">John Ralph</name><name sortKey="Sabat, Grzegorz" sort="Sabat, Grzegorz" uniqKey="Sabat G" first="Grzegorz" last="Sabat">Grzegorz Sabat</name><name sortKey="Skyba, Oleksandr" sort="Skyba, Oleksandr" uniqKey="Skyba O" first="Oleksandr" last="Skyba">Oleksandr Skyba</name></noCountry><country name="États-Unis"><region name="Wisconsin"><name sortKey="Vanden Wymelenberg, Amber" sort="Vanden Wymelenberg, Amber" uniqKey="Vanden Wymelenberg A" first="Amber" last="Vanden Wymelenberg">Amber Vanden Wymelenberg</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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