PhanerochaeteV1, Main, Exploration, bibRecord, 000312

Influence of Populus genotype on gene expression by the wood decay fungus Phanerochaete chrysosporium.

Identifieur interne : 000312 ( Main/Exploration ); précédent : 000311; suivant : 000313

Influence of Populus genotype on gene expression by the wood decay fungus Phanerochaete chrysosporium.

Auteurs : Jill Gaskell [États-Unis] ; Amber Marty [États-Unis] ; Michael Mozuch [États-Unis] ; Philip J. Kersten [États-Unis] ; Sandra Splinter Bondurant [États-Unis] ; Grzegorz Sabat [États-Unis] ; Ali Azarpira [États-Unis] ; John Ralph [États-Unis] ; Oleksandr Skyba [Canada] ; Shawn D. Mansfield [Canada] ; Robert A. Blanchette [États-Unis] ; Dan Cullen [États-Unis]

Source :

Applied and environmental microbiology [ 1098-5336 ] ; 2014.

RBID : pubmed:25015893

Descripteurs français

KwdFr :
- Analyse de profil d'expression de gènes (MeSH), Analyse sur microréseau (MeSH), Bois (microbiologie), Bois (métabolisme), Carbone (métabolisme), Chromatographie en phase liquide (MeSH), Génotype (MeSH), Lignine (métabolisme), Milieux de culture (composition chimique), Phanerochaete (croissance et développement), Phanerochaete (génétique), Phanerochaete (métabolisme), Populus (génétique), Régulation de l'expression des gènes fongiques (MeSH), Spectrométrie de masse en tandem (MeSH).
MESH :
- composition chimique : Milieux de culture.
- croissance et développement : Phanerochaete.
- génétique : Phanerochaete, Populus.
- microbiologie : Bois.
- métabolisme : Bois, Carbone, Lignine, Phanerochaete.
- Analyse de profil d'expression de gènes, Analyse sur microréseau, Chromatographie en phase liquide, Génotype, Régulation de l'expression des gènes fongiques, Spectrométrie de masse en tandem.

English descriptors

KwdEn :
- Carbon (metabolism), Chromatography, Liquid (MeSH), Culture Media (chemistry), Gene Expression Profiling (MeSH), Gene Expression Regulation, Fungal (MeSH), Genotype (MeSH), Lignin (metabolism), Microarray Analysis (MeSH), Phanerochaete (genetics), Phanerochaete (growth & development), Phanerochaete (metabolism), Populus (genetics), Tandem Mass Spectrometry (MeSH), Wood (metabolism), Wood (microbiology).
MESH :
- chemical , chemistry : Culture Media.
- chemical , metabolism : Carbon, Lignin.
- genetics : Phanerochaete, Populus.
- growth & development : Phanerochaete.
- metabolism : Phanerochaete, Wood.
- microbiology : Wood.
- Chromatography, Liquid, Gene Expression Profiling, Gene Expression Regulation, Fungal, Genotype, Microarray Analysis, Tandem Mass Spectrometry.

Abstract

We examined gene expression patterns in the lignin-degrading fungus Phanerochaete chrysosporium when it colonizes hybrid poplar (Populus alba × tremula) and syringyl (S)-rich transgenic derivatives. A combination of microarrays and liquid chromatography-tandem mass spectrometry (LC-MS/MS) allowed detection of a total of 9,959 transcripts and 793 proteins. Comparisons of P. chrysosporium transcript abundance in medium containing poplar or glucose as a sole carbon source showed 113 regulated genes, 11 of which were significantly higher (>2-fold, P < 0.05) in transgenic line 64 relative to the parental line. Possibly related to the very large amounts of syringyl (S) units in this transgenic tree (94 mol% S), several oxidoreductases were among the upregulated genes. Peptides corresponding to a total of 18 oxidoreductases were identified in medium consisting of biomass from line 64 or 82 (85 mol% S) but not in the parental clone (65 mol% S). These results demonstrate that P. chrysosporium gene expression patterns are substantially influenced by lignin composition.

DOI: 10.1128/AEM.01604-14
PubMed: 25015893
PubMed Central: PMC4178610

Affiliations:

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<term>Gene Expression Regulation, Fungal (MeSH)</term>
<term>Genotype (MeSH)</term>
<term>Lignin (metabolism)</term>
<term>Microarray Analysis (MeSH)</term>
<term>Phanerochaete (genetics)</term>
<term>Phanerochaete (growth & development)</term>
<term>Phanerochaete (metabolism)</term>
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<term>Analyse sur microréseau (MeSH)</term>
<term>Bois (microbiologie)</term>
<term>Bois (métabolisme)</term>
<term>Carbone (métabolisme)</term>
<term>Chromatographie en phase liquide (MeSH)</term>
<term>Génotype (MeSH)</term>
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<term>Milieux de culture (composition chimique)</term>
<term>Phanerochaete (croissance et développement)</term>
<term>Phanerochaete (génétique)</term>
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<term>Régulation de l'expression des gènes fongiques (MeSH)</term>
<term>Spectrométrie de masse en tandem (MeSH)</term>
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<term>Lignin</term>
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<keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Phanerochaete</term>
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<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Phanerochaete</term>
<term>Populus</term>
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<keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Phanerochaete</term>
<term>Wood</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Bois</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Wood</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Bois</term>
<term>Carbone</term>
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<term>Phanerochaete</term>
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<keywords scheme="MESH" xml:lang="en"><term>Chromatography, Liquid</term>
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<term>Analyse sur microréseau</term>
<term>Chromatographie en phase liquide</term>
<term>Génotype</term>
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<front><div type="abstract" xml:lang="en">We examined gene expression patterns in the lignin-degrading fungus Phanerochaete chrysosporium when it colonizes hybrid poplar (Populus alba × tremula) and syringyl (S)-rich transgenic derivatives. A combination of microarrays and liquid chromatography-tandem mass spectrometry (LC-MS/MS) allowed detection of a total of 9,959 transcripts and 793 proteins. Comparisons of P. chrysosporium transcript abundance in medium containing poplar or glucose as a sole carbon source showed 113 regulated genes, 11 of which were significantly higher (>2-fold, P < 0.05) in transgenic line 64 relative to the parental line. Possibly related to the very large amounts of syringyl (S) units in this transgenic tree (94 mol% S), several oxidoreductases were among the upregulated genes. Peptides corresponding to a total of 18 oxidoreductases were identified in medium consisting of biomass from line 64 or 82 (85 mol% S) but not in the parental clone (65 mol% S). These results demonstrate that P. chrysosporium gene expression patterns are substantially influenced by lignin composition. </div>
</front>
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<Month>02</Month>
<Day>08</Day>
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<Title>Applied and environmental microbiology</Title>
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<ArticleTitle>Influence of Populus genotype on gene expression by the wood decay fungus Phanerochaete chrysosporium.</ArticleTitle>
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<ELocationID EIdType="doi" ValidYN="Y">10.1128/AEM.01604-14</ELocationID>
<Abstract><AbstractText>We examined gene expression patterns in the lignin-degrading fungus Phanerochaete chrysosporium when it colonizes hybrid poplar (Populus alba × tremula) and syringyl (S)-rich transgenic derivatives. A combination of microarrays and liquid chromatography-tandem mass spectrometry (LC-MS/MS) allowed detection of a total of 9,959 transcripts and 793 proteins. Comparisons of P. chrysosporium transcript abundance in medium containing poplar or glucose as a sole carbon source showed 113 regulated genes, 11 of which were significantly higher (>2-fold, P < 0.05) in transgenic line 64 relative to the parental line. Possibly related to the very large amounts of syringyl (S) units in this transgenic tree (94 mol% S), several oxidoreductases were among the upregulated genes. Peptides corresponding to a total of 18 oxidoreductases were identified in medium consisting of biomass from line 64 or 82 (85 mol% S) but not in the parental clone (65 mol% S). These results demonstrate that P. chrysosporium gene expression patterns are substantially influenced by lignin composition. </AbstractText>
<CopyrightInformation>Copyright © 2014, American Society for Microbiology. All Rights Reserved.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Gaskell</LastName>
<ForeName>Jill</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>USDA Forest Service, Forest Products Laboratory, Madison, Wisconsin, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Marty</LastName>
<ForeName>Amber</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Department of Bacteriology, University of Wisconsin, Madison, Madison, Wisconsin, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Mozuch</LastName>
<ForeName>Michael</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>USDA Forest Service, Forest Products Laboratory, Madison, Wisconsin, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Kersten</LastName>
<ForeName>Philip J</ForeName>
<Initials>PJ</Initials>
<AffiliationInfo><Affiliation>USDA Forest Service, Forest Products Laboratory, Madison, Wisconsin, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Splinter BonDurant</LastName>
<ForeName>Sandra</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>Genetics and Biotechnology Center, University of Wisconsin, Madison, Madison, Wisconsin, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Sabat</LastName>
<ForeName>Grzegorz</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>Genetics and Biotechnology Center, University of Wisconsin, Madison, Madison, Wisconsin, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Azarpira</LastName>
<ForeName>Ali</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Department of Biochemistry, and Department of Energy Great Lakes Bioenergy Research Center, University of Wisconsin, Madison, Madison, Wisconsin, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ralph</LastName>
<ForeName>John</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Department of Biochemistry, and Department of Energy Great Lakes Bioenergy Research Center, University of Wisconsin, Madison, Madison, Wisconsin, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Skyba</LastName>
<ForeName>Oleksandr</ForeName>
<Initials>O</Initials>
<AffiliationInfo><Affiliation>Department of Wood Science, University of British Columbia, Vancouver, British Columbia, Canada.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Mansfield</LastName>
<ForeName>Shawn D</ForeName>
<Initials>SD</Initials>
<AffiliationInfo><Affiliation>Department of Wood Science, University of British Columbia, Vancouver, British Columbia, Canada.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Blanchette</LastName>
<ForeName>Robert A</ForeName>
<Initials>RA</Initials>
<AffiliationInfo><Affiliation>Department of Plant Pathology, University of Minnesota, Saint Paul, Minnesota, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Cullen</LastName>
<ForeName>Dan</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>USDA Forest Service, Forest Products Laboratory, Madison, Wisconsin, USA dcullen@wisc.edu.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2014</Year>
<Month>07</Month>
<Day>11</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>United States</Country>
<MedlineTA>Appl Environ Microbiol</MedlineTA>
<NlmUniqueID>7605801</NlmUniqueID>
<ISSNLinking>0099-2240</ISSNLinking>
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<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D003470">Culture Media</NameOfSubstance>
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<Chemical><RegistryNumber>7440-44-0</RegistryNumber>
<NameOfSubstance UI="D002244">Carbon</NameOfSubstance>
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</MeshHeading>
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<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
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<MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D015966" MajorTopicYN="Y">Gene Expression Regulation, Fungal</DescriptorName>
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<MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName>
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<MeshHeading><DescriptorName UI="D046228" MajorTopicYN="N">Microarray Analysis</DescriptorName>
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<MeshHeading><DescriptorName UI="D053719" MajorTopicYN="N">Tandem Mass Spectrometry</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014934" MajorTopicYN="N">Wood</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
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Influence of Populus genotype on gene expression by the wood decay fungus Phanerochaete chrysosporium.

Influence of Populus genotype on gene expression by the wood decay fungus Phanerochaete chrysosporium.

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