Characterization of a highly expressed lignin peroxidase-encoding gene from the basidiomycete Phanerochaete chrysosporium.
Identifieur interne : 000E54 ( Main/Corpus ); précédent : 000E53; suivant : 000E55Characterization of a highly expressed lignin peroxidase-encoding gene from the basidiomycete Phanerochaete chrysosporium.
Auteurs : T G Ritch ; M H GoldSource :
- Gene [ 0378-1119 ] ; 1992.
English descriptors
- KwdEn :
- Amino Acid Sequence (MeSH), Base Sequence (MeSH), Basidiomycota (enzymology), Basidiomycota (genetics), Cloning, Molecular (MeSH), Codon (genetics), Introns (genetics), Isoenzymes (classification), Isoenzymes (genetics), Lignin (metabolism), Molecular Sequence Data (MeSH), Peroxidases (classification), Peroxidases (genetics), Promoter Regions, Genetic (genetics), Regulatory Sequences, Nucleic Acid (genetics), Sequence Homology, Nucleic Acid (MeSH).
- MESH :
- chemical , classification : Isoenzymes, Peroxidases.
- chemical , genetics : Codon, Isoenzymes, Peroxidases.
- enzymology : Basidiomycota.
- genetics : Basidiomycota, Introns, Promoter Regions, Genetic, Regulatory Sequences, Nucleic Acid.
- chemical , metabolism : Lignin.
- Amino Acid Sequence, Base Sequence, Cloning, Molecular, Molecular Sequence Data, Sequence Homology, Nucleic Acid.
Abstract
The genomic clone, LG2, encoding LiP2, the major lignin peroxidase (LiP) isozyme from Phanerochaete chrysosporium strain OGC101, was isolated and characterized. The 5'-untranslated region of LG2 contains sequences similar to CRE and XRE promoter elements. Comparison with its transcript indicates that eight introns, each less than 59 bp, interrupt the coding sequence. Comparison with genes encoding other LiP isozymes shows five related patterns of intron location, whose incidence coincides with described LiP structural subfamilies. Codon bias indices calculated for all known P. chrysosporium genes, including trpC and genes encoding LiP, MnP, and exo-cellobiohydrolase I, demonstrate that LG2 has the most biased codon usage. We conclude that subdivisions of the LiP family may be based on intron location in the encoding genes, and that ranking of isozyme production levels can be estimated by the extent of bias in codon usage in the cognate gene.
DOI: 10.1016/0378-1119(92)90250-s
PubMed: 1511887
Links to Exploration step
pubmed:1511887Le document en format XML
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<author><name sortKey="Ritch, T G" sort="Ritch, T G" uniqKey="Ritch T" first="T G" last="Ritch">T G Ritch</name>
<affiliation><nlm:affiliation>Department of Chemical and Biological Sciences, Oregon Graduate Institute of Science and Technology, Beaverton 97006-1999.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Gold, M H" sort="Gold, M H" uniqKey="Gold M" first="M H" last="Gold">M H Gold</name>
</author>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">Characterization of a highly expressed lignin peroxidase-encoding gene from the basidiomycete Phanerochaete chrysosporium.</title>
<author><name sortKey="Ritch, T G" sort="Ritch, T G" uniqKey="Ritch T" first="T G" last="Ritch">T G Ritch</name>
<affiliation><nlm:affiliation>Department of Chemical and Biological Sciences, Oregon Graduate Institute of Science and Technology, Beaverton 97006-1999.</nlm:affiliation>
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<author><name sortKey="Gold, M H" sort="Gold, M H" uniqKey="Gold M" first="M H" last="Gold">M H Gold</name>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence (MeSH)</term>
<term>Base Sequence (MeSH)</term>
<term>Basidiomycota (enzymology)</term>
<term>Basidiomycota (genetics)</term>
<term>Cloning, Molecular (MeSH)</term>
<term>Codon (genetics)</term>
<term>Introns (genetics)</term>
<term>Isoenzymes (classification)</term>
<term>Isoenzymes (genetics)</term>
<term>Lignin (metabolism)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Peroxidases (classification)</term>
<term>Peroxidases (genetics)</term>
<term>Promoter Regions, Genetic (genetics)</term>
<term>Regulatory Sequences, Nucleic Acid (genetics)</term>
<term>Sequence Homology, Nucleic Acid (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="classification" xml:lang="en"><term>Isoenzymes</term>
<term>Peroxidases</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Codon</term>
<term>Isoenzymes</term>
<term>Peroxidases</term>
</keywords>
<keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Basidiomycota</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Basidiomycota</term>
<term>Introns</term>
<term>Promoter Regions, Genetic</term>
<term>Regulatory Sequences, Nucleic Acid</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Lignin</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Base Sequence</term>
<term>Cloning, Molecular</term>
<term>Molecular Sequence Data</term>
<term>Sequence Homology, Nucleic Acid</term>
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<front><div type="abstract" xml:lang="en">The genomic clone, LG2, encoding LiP2, the major lignin peroxidase (LiP) isozyme from Phanerochaete chrysosporium strain OGC101, was isolated and characterized. The 5'-untranslated region of LG2 contains sequences similar to CRE and XRE promoter elements. Comparison with its transcript indicates that eight introns, each less than 59 bp, interrupt the coding sequence. Comparison with genes encoding other LiP isozymes shows five related patterns of intron location, whose incidence coincides with described LiP structural subfamilies. Codon bias indices calculated for all known P. chrysosporium genes, including trpC and genes encoding LiP, MnP, and exo-cellobiohydrolase I, demonstrate that LG2 has the most biased codon usage. We conclude that subdivisions of the LiP family may be based on intron location in the encoding genes, and that ranking of isozyme production levels can be estimated by the extent of bias in codon usage in the cognate gene.</div>
</front>
</TEI>
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<DateCompleted><Year>1992</Year>
<Month>09</Month>
<Day>28</Day>
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<DateRevised><Year>2019</Year>
<Month>07</Month>
<Day>07</Day>
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<Article PubModel="Print"><Journal><ISSN IssnType="Print">0378-1119</ISSN>
<JournalIssue CitedMedium="Print"><Volume>118</Volume>
<Issue>1</Issue>
<PubDate><Year>1992</Year>
<Month>Sep</Month>
<Day>01</Day>
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<Title>Gene</Title>
<ISOAbbreviation>Gene</ISOAbbreviation>
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<ArticleTitle>Characterization of a highly expressed lignin peroxidase-encoding gene from the basidiomycete Phanerochaete chrysosporium.</ArticleTitle>
<Pagination><MedlinePgn>73-80</MedlinePgn>
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<Abstract><AbstractText>The genomic clone, LG2, encoding LiP2, the major lignin peroxidase (LiP) isozyme from Phanerochaete chrysosporium strain OGC101, was isolated and characterized. The 5'-untranslated region of LG2 contains sequences similar to CRE and XRE promoter elements. Comparison with its transcript indicates that eight introns, each less than 59 bp, interrupt the coding sequence. Comparison with genes encoding other LiP isozymes shows five related patterns of intron location, whose incidence coincides with described LiP structural subfamilies. Codon bias indices calculated for all known P. chrysosporium genes, including trpC and genes encoding LiP, MnP, and exo-cellobiohydrolase I, demonstrate that LG2 has the most biased codon usage. We conclude that subdivisions of the LiP family may be based on intron location in the encoding genes, and that ranking of isozyme production levels can be estimated by the extent of bias in codon usage in the cognate gene.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ritch</LastName>
<ForeName>T G</ForeName>
<Initials>TG</Initials>
<Suffix>Jr</Suffix>
<AffiliationInfo><Affiliation>Department of Chemical and Biological Sciences, Oregon Graduate Institute of Science and Technology, Beaverton 97006-1999.</Affiliation>
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<Author ValidYN="Y"><LastName>Gold</LastName>
<ForeName>M H</ForeName>
<Initials>MH</Initials>
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<Language>eng</Language>
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<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
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<NameOfSubstance UI="D007527">Isoenzymes</NameOfSubstance>
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<Chemical><RegistryNumber>9005-53-2</RegistryNumber>
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<GeneSymbolList><GeneSymbol>LiP2</GeneSymbol>
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<MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName>
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</MeshHeading>
<MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName>
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<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
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<MeshHeading><DescriptorName UI="D012045" MajorTopicYN="N">Regulatory Sequences, Nucleic Acid</DescriptorName>
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<MeshHeading><DescriptorName UI="D012689" MajorTopicYN="N">Sequence Homology, Nucleic Acid</DescriptorName>
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