FTIR as an easy and fast analytical approach to follow up microbial growth during fungal pretreatment of poplar wood with Phanerochaete chrysosporium.
Identifieur interne : 000130 ( Main/Corpus ); précédent : 000129; suivant : 000131FTIR as an easy and fast analytical approach to follow up microbial growth during fungal pretreatment of poplar wood with Phanerochaete chrysosporium.
Auteurs : I. Cornet ; N. Wittner ; G. Tofani ; S. TavernierSource :
- Journal of microbiological methods [ 1872-8359 ] ; 2018.
English descriptors
- KwdEn :
- Batch Cell Culture Techniques (MeSH), Bioreactors (MeSH), Cell Wall (drug effects), Chitin (analysis), Chitin (metabolism), Glucosamine (analysis), Glucosamine (metabolism), Kinetics (MeSH), Lignin (analysis), Lignin (metabolism), Pentanones (pharmacology), Phanerochaete (drug effects), Phanerochaete (growth & development), Populus (microbiology), Spectroscopy, Fourier Transform Infrared (methods), Sulfuric Acids (pharmacology).
- MESH :
- chemical , analysis : Chitin, Glucosamine, Lignin.
- drug effects : Cell Wall, Phanerochaete.
- growth & development : Phanerochaete.
- chemical , metabolism : Chitin, Glucosamine, Lignin.
- methods : Spectroscopy, Fourier Transform Infrared.
- microbiology : Populus.
- chemical , pharmacology : Pentanones, Sulfuric Acids.
- Batch Cell Culture Techniques, Bioreactors, Kinetics.
Abstract
Since the determination of the fermentation kinetics is one of the main challenges in solid state fermentation, the quantitative measurement of biomass growth during microbial pretreatment by FTIR spectroscopy in Attenuated Total Reflectance mode was evaluated. Peaks at wave numbers of 1651 cm-1 and 1593 cm-1 showed to be affected during pretreatment of poplar wood particles by Phanerochaete chrysosporium MUCL 19343. Samples with different microbial biomass fractions were obtained from two different experiments, i.e., shake flask and fixed-bed reactor experiments. The glucosamine concentration was compared to the normalized absorbance ratio of the 1651 cm-1 to 1593 cm-1 peak, measured by FTIR-ATR, and resulted in a linear relationship. The application of a normalized absorbance ratio in function of time provided a graph that was similar to the microbial growth curve. Application of FTIR in ATR mode to follow-up kinetics during solid state fermentation seems to be a fast and easy alternative to laborious measurement techniques, such as glucosamine determination.
DOI: 10.1016/j.mimet.2018.01.004
PubMed: 29339233
Links to Exploration step
pubmed:29339233Le document en format XML
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Wittner</name><affiliation><nlm:affiliation>BioGEM - Biochemical Green Engineering & Materials, Faculty of Applied Engineering, University of Antwerp, Salesianenlaan 90, B-2660 Antwerp, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Tofani, G" sort="Tofani, G" uniqKey="Tofani G" first="G" last="Tofani">G. Tofani</name><affiliation><nlm:affiliation>BioGEM - Biochemical Green Engineering & Materials, Faculty of Applied Engineering, University of Antwerp, Salesianenlaan 90, B-2660 Antwerp, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Tavernier, S" sort="Tavernier, S" uniqKey="Tavernier S" first="S" last="Tavernier">S. Tavernier</name><affiliation><nlm:affiliation>BioGEM - Biochemical Green Engineering & Materials, Faculty of Applied Engineering, University of Antwerp, Salesianenlaan 90, B-2660 Antwerp, Belgium.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2018">2018</date><idno type="RBID">pubmed:29339233</idno><idno type="pmid">29339233</idno><idno type="doi">10.1016/j.mimet.2018.01.004</idno><idno type="wicri:Area/Main/Corpus">000130</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000130</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">FTIR as an easy and fast analytical approach to follow up microbial growth during fungal pretreatment of poplar wood with Phanerochaete chrysosporium.</title><author><name sortKey="Cornet, I" sort="Cornet, I" uniqKey="Cornet I" first="I" last="Cornet">I. Cornet</name><affiliation><nlm:affiliation>BioGEM - Biochemical Green Engineering & Materials, Faculty of Applied Engineering, University of Antwerp, Salesianenlaan 90, B-2660 Antwerp, Belgium. Electronic address: iris.cornet@uantwerp.be.</nlm:affiliation></affiliation></author><author><name sortKey="Wittner, N" sort="Wittner, N" uniqKey="Wittner N" first="N" last="Wittner">N. Wittner</name><affiliation><nlm:affiliation>BioGEM - Biochemical Green Engineering & Materials, Faculty of Applied Engineering, University of Antwerp, Salesianenlaan 90, B-2660 Antwerp, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Tofani, G" sort="Tofani, G" uniqKey="Tofani G" first="G" last="Tofani">G. Tofani</name><affiliation><nlm:affiliation>BioGEM - Biochemical Green Engineering & Materials, Faculty of Applied Engineering, University of Antwerp, Salesianenlaan 90, B-2660 Antwerp, Belgium.</nlm:affiliation></affiliation></author><author><name sortKey="Tavernier, S" sort="Tavernier, S" uniqKey="Tavernier S" first="S" last="Tavernier">S. Tavernier</name><affiliation><nlm:affiliation>BioGEM - Biochemical Green Engineering & Materials, Faculty of Applied Engineering, University of Antwerp, Salesianenlaan 90, B-2660 Antwerp, Belgium.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Journal of microbiological methods</title><idno type="eISSN">1872-8359</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Batch Cell Culture Techniques (MeSH)</term><term>Bioreactors (MeSH)</term><term>Cell Wall (drug effects)</term><term>Chitin (analysis)</term><term>Chitin (metabolism)</term><term>Glucosamine (analysis)</term><term>Glucosamine (metabolism)</term><term>Kinetics (MeSH)</term><term>Lignin (analysis)</term><term>Lignin (metabolism)</term><term>Pentanones (pharmacology)</term><term>Phanerochaete (drug effects)</term><term>Phanerochaete (growth & development)</term><term>Populus (microbiology)</term><term>Spectroscopy, Fourier Transform Infrared (methods)</term><term>Sulfuric Acids (pharmacology)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>Chitin</term><term>Glucosamine</term><term>Lignin</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Cell Wall</term><term>Phanerochaete</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Phanerochaete</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Chitin</term><term>Glucosamine</term><term>Lignin</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Spectroscopy, Fourier Transform Infrared</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Pentanones</term><term>Sulfuric Acids</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Batch Cell Culture Techniques</term><term>Bioreactors</term><term>Kinetics</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Since the determination of the fermentation kinetics is one of the main challenges in solid state fermentation, the quantitative measurement of biomass growth during microbial pretreatment by FTIR spectroscopy in Attenuated Total Reflectance mode was evaluated. Peaks at wave numbers of 1651 cm<sup>-1</sup> and 1593 cm<sup>-1</sup> showed to be affected during pretreatment of poplar wood particles by Phanerochaete chrysosporium MUCL 19343. Samples with different microbial biomass fractions were obtained from two different experiments, i.e., shake flask and fixed-bed reactor experiments. The glucosamine concentration was compared to the normalized absorbance ratio of the 1651 cm<sup>-1</sup> to 1593 cm<sup>-1</sup> peak, measured by FTIR-ATR, and resulted in a linear relationship. The application of a normalized absorbance ratio in function of time provided a graph that was similar to the microbial growth curve. Application of FTIR in ATR mode to follow-up kinetics during solid state fermentation seems to be a fast and easy alternative to laborious measurement techniques, such as glucosamine determination.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29339233</PMID><DateCompleted><Year>2019</Year><Month>07</Month><Day>08</Day></DateCompleted><DateRevised><Year>2019</Year><Month>12</Month><Day>10</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1872-8359</ISSN><JournalIssue CitedMedium="Internet"><Volume>145</Volume><PubDate><Year>2018</Year><Month>02</Month></PubDate></JournalIssue><Title>Journal of microbiological methods</Title><ISOAbbreviation>J Microbiol Methods</ISOAbbreviation></Journal><ArticleTitle>FTIR as an easy and fast analytical approach to follow up microbial growth during fungal pretreatment of poplar wood with Phanerochaete chrysosporium.</ArticleTitle><Pagination><MedlinePgn>82-86</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0167-7012(18)30004-6</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.mimet.2018.01.004</ELocationID><Abstract><AbstractText>Since the determination of the fermentation kinetics is one of the main challenges in solid state fermentation, the quantitative measurement of biomass growth during microbial pretreatment by FTIR spectroscopy in Attenuated Total Reflectance mode was evaluated. Peaks at wave numbers of 1651 cm<sup>-1</sup> and 1593 cm<sup>-1</sup> showed to be affected during pretreatment of poplar wood particles by Phanerochaete chrysosporium MUCL 19343. Samples with different microbial biomass fractions were obtained from two different experiments, i.e., shake flask and fixed-bed reactor experiments. The glucosamine concentration was compared to the normalized absorbance ratio of the 1651 cm<sup>-1</sup> to 1593 cm<sup>-1</sup> peak, measured by FTIR-ATR, and resulted in a linear relationship. The application of a normalized absorbance ratio in function of time provided a graph that was similar to the microbial growth curve. Application of FTIR in ATR mode to follow-up kinetics during solid state fermentation seems to be a fast and easy alternative to laborious measurement techniques, such as glucosamine determination.</AbstractText><CopyrightInformation>Copyright © 2018 Elsevier B.V. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Cornet</LastName><ForeName>I</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>BioGEM - Biochemical Green Engineering & Materials, Faculty of Applied Engineering, University of Antwerp, Salesianenlaan 90, B-2660 Antwerp, Belgium. Electronic address: iris.cornet@uantwerp.be.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wittner</LastName><ForeName>N</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>BioGEM - Biochemical Green Engineering & Materials, Faculty of Applied Engineering, University of Antwerp, Salesianenlaan 90, B-2660 Antwerp, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tofani</LastName><ForeName>G</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>BioGEM - Biochemical Green Engineering & Materials, Faculty of Applied Engineering, University of Antwerp, Salesianenlaan 90, B-2660 Antwerp, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tavernier</LastName><ForeName>S</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>BioGEM - Biochemical Green Engineering & Materials, Faculty of Applied Engineering, University of Antwerp, Salesianenlaan 90, B-2660 Antwerp, Belgium.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D023362">Evaluation Study</PublicationType><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>01</Month><Day>13</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>J Microbiol Methods</MedlineTA><NlmUniqueID>8306883</NlmUniqueID><ISSNLinking>0167-7012</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010422">Pentanones</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D013464">Sulfuric Acids</NameOfSubstance></Chemical><Chemical><RegistryNumber>1398-61-4</RegistryNumber><NameOfSubstance UI="D002686">Chitin</NameOfSubstance></Chemical><Chemical><RegistryNumber>46R950BP4J</RegistryNumber><NameOfSubstance UI="C008790">acetylacetone</NameOfSubstance></Chemical><Chemical><RegistryNumber>9005-53-2</RegistryNumber><NameOfSubstance UI="D008031">Lignin</NameOfSubstance></Chemical><Chemical><RegistryNumber>N08U5BOQ1K</RegistryNumber><NameOfSubstance UI="D005944">Glucosamine</NameOfSubstance></Chemical><Chemical><RegistryNumber>O40UQP6WCF</RegistryNumber><NameOfSubstance UI="C033158">sulfuric acid</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D061249" MajorTopicYN="N">Batch Cell Culture Techniques</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019149" MajorTopicYN="N">Bioreactors</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002473" MajorTopicYN="N">Cell Wall</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002686" MajorTopicYN="N">Chitin</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005944" MajorTopicYN="N">Glucosamine</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D007700" MajorTopicYN="N">Kinetics</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008031" MajorTopicYN="N">Lignin</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010422" MajorTopicYN="N">Pentanones</DescriptorName><QualifierName UI="Q000494" MajorTopicYN="N">pharmacology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020075" MajorTopicYN="N">Phanerochaete</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017550" MajorTopicYN="N">Spectroscopy, Fourier Transform Infrared</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013464" MajorTopicYN="N">Sulfuric Acids</DescriptorName><QualifierName UI="Q000494" MajorTopicYN="N">pharmacology</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Attenuated Total Reflectance</Keyword><Keyword MajorTopicYN="Y">Fourier Transform Infrared spectroscopy</Keyword><Keyword MajorTopicYN="Y">Microbial pretreatment</Keyword><Keyword MajorTopicYN="Y">Phanerochaete chrysosporium</Keyword><Keyword MajorTopicYN="Y">Quantitative analysis</Keyword><Keyword MajorTopicYN="Y">Solid state fermentation</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>12</Month><Day>23</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2018</Year><Month>01</Month><Day>11</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>01</Month><Day>11</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>1</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>7</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>1</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29339233</ArticleId><ArticleId 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