Transcriptome analysis of a spontaneous mutant in sweet orange [Citrus sinensis (L.) Osbeck] during fruit development.
Identifieur interne : 000994 ( PubMed/Curation ); précédent : 000993; suivant : 000995Transcriptome analysis of a spontaneous mutant in sweet orange [Citrus sinensis (L.) Osbeck] during fruit development.
Auteurs : Qing Liu [République populaire de Chine] ; Andan Zhu ; Lijun Chai ; Wenjing Zhou ; Keqin Yu ; Jian Ding ; Juan Xu ; Xiuxin DengSource :
- Journal of experimental botany [ 1460-2431 ] ; 2009.
English descriptors
- KwdEn :
- Citrus sinensis (genetics), Citrus sinensis (growth & development), Cluster Analysis, Expressed Sequence Tags, Flowers (genetics), Fruit (genetics), Fruit (growth & development), Gene Expression Profiling, Gene Expression Regulation, Plant, Gene Library, Genes, Plant, Genes, Regulator, Metabolic Networks and Pathways, Mutation (genetics), Nucleic Acid Hybridization, Oligonucleotide Array Sequence Analysis, Phenotype, Plant Proteins (genetics), Plant Proteins (metabolism), Pyruvates (metabolism), Reproducibility of Results, Reverse Transcriptase Polymerase Chain Reaction.
- MESH :
- chemical , genetics : Plant Proteins.
- genetics : Citrus sinensis, Flowers, Fruit, Mutation.
- growth & development : Citrus sinensis, Fruit.
- chemical , metabolism : Plant Proteins, Pyruvates.
- Cluster Analysis, Expressed Sequence Tags, Gene Expression Profiling, Gene Expression Regulation, Plant, Gene Library, Genes, Plant, Genes, Regulator, Metabolic Networks and Pathways, Nucleic Acid Hybridization, Oligonucleotide Array Sequence Analysis, Phenotype, Reproducibility of Results, Reverse Transcriptase Polymerase Chain Reaction.
Abstract
Bud mutations often arise in citrus. The selection of mutants is one of the most important breeding channels in citrus. However, the molecular basis of bud mutation has rarely been studied. To identify differentially expressed genes in a spontaneous sweet orange [C. sinensis (L.) Osbeck] bud mutation which causes lycopene accumulation, low citric acid, and high sucrose in fruit, suppression subtractive hybridization and microarray analysis were performed to decipher this bud mutation during fruit development. After sequencing of the differentially expressed clones, a total of 267 non-redundant transcripts were obtained and 182 (68.2%) of them shared homology (E-value < or = 1x10(-10)) with known gene products. Few genes were constitutively up- or down-regulated (fold change > or = 2) in the bud mutation during fruit development. Self-organizing tree algorithm analysis results showed that 95.1% of the differentially expressed genes were extensively coordinated with the initiation of lycopene accumulation. Metabolic process, cellular process, establishment of localization, response to stimulus, and biological regulation-related transcripts were among the most regulated genes. These genes were involved in many biological processes such as organic acid metabolism, lipid metabolism, transport, and pyruvate metabolism, etc. Moreover, 13 genes which were differentially regulated at 170 d after flowering shared homology with previously described signal transduction or transcription factors. The information generated in this study provides new clues to aid in the understanding of bud mutation in citrus.
DOI: 10.1093/jxb/ern329
PubMed: 19218315
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pubmed:19218315Le document en format XML
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<front><div type="abstract" xml:lang="en">Bud mutations often arise in citrus. The selection of mutants is one of the most important breeding channels in citrus. However, the molecular basis of bud mutation has rarely been studied. To identify differentially expressed genes in a spontaneous sweet orange [C. sinensis (L.) Osbeck] bud mutation which causes lycopene accumulation, low citric acid, and high sucrose in fruit, suppression subtractive hybridization and microarray analysis were performed to decipher this bud mutation during fruit development. After sequencing of the differentially expressed clones, a total of 267 non-redundant transcripts were obtained and 182 (68.2%) of them shared homology (E-value < or = 1x10(-10)) with known gene products. Few genes were constitutively up- or down-regulated (fold change > or = 2) in the bud mutation during fruit development. Self-organizing tree algorithm analysis results showed that 95.1% of the differentially expressed genes were extensively coordinated with the initiation of lycopene accumulation. Metabolic process, cellular process, establishment of localization, response to stimulus, and biological regulation-related transcripts were among the most regulated genes. These genes were involved in many biological processes such as organic acid metabolism, lipid metabolism, transport, and pyruvate metabolism, etc. Moreover, 13 genes which were differentially regulated at 170 d after flowering shared homology with previously described signal transduction or transcription factors. The information generated in this study provides new clues to aid in the understanding of bud mutation in citrus.</div>
</front>
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<Abstract><AbstractText>Bud mutations often arise in citrus. The selection of mutants is one of the most important breeding channels in citrus. However, the molecular basis of bud mutation has rarely been studied. To identify differentially expressed genes in a spontaneous sweet orange [C. sinensis (L.) Osbeck] bud mutation which causes lycopene accumulation, low citric acid, and high sucrose in fruit, suppression subtractive hybridization and microarray analysis were performed to decipher this bud mutation during fruit development. After sequencing of the differentially expressed clones, a total of 267 non-redundant transcripts were obtained and 182 (68.2%) of them shared homology (E-value < or = 1x10(-10)) with known gene products. Few genes were constitutively up- or down-regulated (fold change > or = 2) in the bud mutation during fruit development. Self-organizing tree algorithm analysis results showed that 95.1% of the differentially expressed genes were extensively coordinated with the initiation of lycopene accumulation. Metabolic process, cellular process, establishment of localization, response to stimulus, and biological regulation-related transcripts were among the most regulated genes. These genes were involved in many biological processes such as organic acid metabolism, lipid metabolism, transport, and pyruvate metabolism, etc. Moreover, 13 genes which were differentially regulated at 170 d after flowering shared homology with previously described signal transduction or transcription factors. The information generated in this study provides new clues to aid in the understanding of bud mutation in citrus.</AbstractText>
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<MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName>
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<MeshHeading><DescriptorName UI="D015723" MajorTopicYN="N">Gene Library</DescriptorName>
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