Comparative transcriptional profiling of orange fruit in response to the biocontrol yeast Kloeckera apiculata and its active compounds.
Identifieur interne : 000087 ( PubMed/Curation ); précédent : 000086; suivant : 000088Comparative transcriptional profiling of orange fruit in response to the biocontrol yeast Kloeckera apiculata and its active compounds.
Auteurs : Pu Liu [Oman] ; Kai Chen [Oman] ; Guofeng Li [Oman] ; Xiaoping Yang [Oman] ; Chao-An Long [République populaire de Chine]Source :
- BMC genomics [ 1471-2164 ] ; 2016.
English descriptors
- KwdEn :
- Calcium Signaling (genetics), Citrus sinensis (genetics), Citrus sinensis (growth & development), Citrus sinensis (microbiology), Cyclopentanes (metabolism), Ethylenes (metabolism), Fruit (genetics), Fruit (growth & development), Gene Expression Profiling, Gene Expression Regulation, Plant, Kloeckera (drug effects), Kloeckera (pathogenicity), Mitogen-Activated Protein Kinase Kinases (genetics), Oxylipins (metabolism), Phenylalanine (metabolism), Phenylethyl Alcohol (pharmacology).
- MESH :
- chemical , genetics : Mitogen-Activated Protein Kinase Kinases.
- chemical , metabolism : Cyclopentanes, Ethylenes, Oxylipins, Phenylalanine.
- drug effects : Kloeckera.
- genetics : Calcium Signaling, Citrus sinensis, Fruit.
- growth & development : Citrus sinensis, Fruit.
- microbiology : Citrus sinensis.
- pathogenicity : Kloeckera.
- chemical , pharmacology : Phenylethyl Alcohol.
- Gene Expression Profiling, Gene Expression Regulation, Plant.
Abstract
The yeast Kloeckera apiculata strain 34-9 is an antagonist that shows biological control activity against the postharvest fungal pathogens of citrus. An antifungal compound, 2-phenylethanol (PEA), has been identified from the extract of K. apiculata. To better understand the molecular processes underlying the response of citrus fruit tissue to K. apiculata, the extract and PEA, microarray analyses were performed on navel oranges using an Affymetrix Citrus GeneChip.
DOI: 10.1186/s12864-015-2333-3
PubMed: 26725242
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pubmed:26725242Le document en format XML
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China. kadychen2015@163.com.</nlm:affiliation><country wicri:rule="url">Oman</country></affiliation></author><author><name sortKey="Li, Guofeng" sort="Li, Guofeng" uniqKey="Li G" first="Guofeng" last="Li">Guofeng Li</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Pomology, Anhui Agricultural University, Hefei, 230036, P. R. China. liguofeng0526@163.com.</nlm:affiliation><country wicri:rule="url">Oman</country></affiliation></author><author><name sortKey="Yang, Xiaoping" sort="Yang, Xiaoping" uniqKey="Yang X" first="Xiaoping" last="Yang">Xiaoping Yang</name><affiliation wicri:level="1"><nlm:affiliation>Research Institute of Fruit and Tea, Hubei Academy of Agricultural Science, Wuhan, 430064, P. R. 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China. puliuchina@gmail.com.</nlm:affiliation><country wicri:rule="url">Oman</country></affiliation></author><author><name sortKey="Chen, Kai" sort="Chen, Kai" uniqKey="Chen K" first="Kai" last="Chen">Kai Chen</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University, Wuhan, 430070, P. R. China. kadychen2015@163.com.</nlm:affiliation><country wicri:rule="url">Oman</country></affiliation></author><author><name sortKey="Li, Guofeng" sort="Li, Guofeng" uniqKey="Li G" first="Guofeng" last="Li">Guofeng Li</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Pomology, Anhui Agricultural University, Hefei, 230036, P. R. China. liguofeng0526@163.com.</nlm:affiliation><country wicri:rule="url">Oman</country></affiliation></author><author><name sortKey="Yang, Xiaoping" sort="Yang, Xiaoping" uniqKey="Yang X" first="Xiaoping" last="Yang">Xiaoping Yang</name><affiliation wicri:level="1"><nlm:affiliation>Research Institute of Fruit and Tea, Hubei Academy of Agricultural Science, Wuhan, 430064, P. R. China. yangxiaoping1981@163.com.</nlm:affiliation><country wicri:rule="url">Oman</country></affiliation></author><author><name sortKey="Long, Chao An" sort="Long, Chao An" uniqKey="Long C" first="Chao-An" last="Long">Chao-An Long</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University, Wuhan, 430070, P. R. China. calong@mail.hzau.edu.cn.</nlm:affiliation><country wicri:rule="url">République populaire de Chine</country></affiliation></author></analytic><series><title level="j">BMC genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Calcium Signaling (genetics)</term><term>Citrus sinensis (genetics)</term><term>Citrus sinensis (growth & development)</term><term>Citrus sinensis (microbiology)</term><term>Cyclopentanes (metabolism)</term><term>Ethylenes (metabolism)</term><term>Fruit (genetics)</term><term>Fruit (growth & development)</term><term>Gene Expression Profiling</term><term>Gene Expression Regulation, Plant</term><term>Kloeckera (drug effects)</term><term>Kloeckera (pathogenicity)</term><term>Mitogen-Activated Protein Kinase Kinases (genetics)</term><term>Oxylipins (metabolism)</term><term>Phenylalanine (metabolism)</term><term>Phenylethyl Alcohol (pharmacology)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Mitogen-Activated Protein Kinase Kinases</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Cyclopentanes</term><term>Ethylenes</term><term>Oxylipins</term><term>Phenylalanine</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Kloeckera</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Calcium Signaling</term><term>Citrus sinensis</term><term>Fruit</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Citrus sinensis</term><term>Fruit</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Citrus sinensis</term></keywords><keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Kloeckera</term></keywords><keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Phenylethyl Alcohol</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term><term>Gene Expression Regulation, Plant</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The yeast Kloeckera apiculata strain 34-9 is an antagonist that shows biological control activity against the postharvest fungal pathogens of citrus. An antifungal compound, 2-phenylethanol (PEA), has been identified from the extract of K. apiculata. To better understand the molecular processes underlying the response of citrus fruit tissue to K. apiculata, the extract and PEA, microarray analyses were performed on navel oranges using an Affymetrix Citrus GeneChip.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26725242</PMID><DateCreated><Year>2016</Year><Month>1</Month><Day>4</Day></DateCreated><DateCompleted><Year>2016</Year><Month>09</Month><Day>28</Day></DateCompleted><DateRevised><Year>2016</Year><Month>1</Month><Day>6</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN><JournalIssue CitedMedium="Internet"><Volume>17</Volume><PubDate><Year>2016</Year><Month>Jan</Month><Day>04</Day></PubDate></JournalIssue><Title>BMC genomics</Title><ISOAbbreviation>BMC Genomics</ISOAbbreviation></Journal><ArticleTitle>Comparative transcriptional profiling of orange fruit in response to the biocontrol yeast Kloeckera apiculata and its active compounds.</ArticleTitle><Pagination><MedlinePgn>17</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s12864-015-2333-3</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">The yeast Kloeckera apiculata strain 34-9 is an antagonist that shows biological control activity against the postharvest fungal pathogens of citrus. An antifungal compound, 2-phenylethanol (PEA), has been identified from the extract of K. apiculata. To better understand the molecular processes underlying the response of citrus fruit tissue to K. apiculata, the extract and PEA, microarray analyses were performed on navel oranges using an Affymetrix Citrus GeneChip.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">As many as 801, 339 and 608 differentially expressed genes (DEGs) were identified after the application of K. apiculata, the extract and PEA, respectively. In general, K. apiculata induced the expression of defence-related genes. In addition to chitinase and β-1,3-glucanase, genes involved in ethylene (ET), jasmonic acid (JA), calcium signalling, MAPK signalling and phenylalanine metabolism were induced. In contrast, monodehydroascorbate reductase, superoxide dismutase (SOD), catalase (CAT), peroxidase (POD) and carotenoid biosynthesis genes were down-regulated. The expression profiles for the extract- and PEA-treated samples were similar to that found for yeast (sharing 57.4 % DEGs), with a significant increase in the transcript levels of defence-related genes.</AbstractText><AbstractText Label="CONCLUSION" NlmCategory="CONCLUSIONS">This study provides a global picture of the gene expression changes in navel oranges after the application of the antagonist yeast K. apiculata, its extract and PEA. The interpretation of the DEGs revealed new insight into the molecular processes that regulate the defence responses in orange tissue.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Pu</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Key Laboratory of Pomology, Anhui Agricultural University, Hefei, 230036, P. R. China. puliuchina@gmail.com.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Key Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University, Wuhan, 430070, P. R. China. puliuchina@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Kai</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Key Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University, Wuhan, 430070, P. R. China. kadychen2015@163.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Guofeng</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Key Laboratory of Pomology, Anhui Agricultural University, Hefei, 230036, P. R. China. liguofeng0526@163.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Xiaoping</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Research Institute of Fruit and Tea, Hubei Academy of Agricultural Science, Wuhan, 430064, P. R. China. yangxiaoping1981@163.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Long</LastName><ForeName>Chao-An</ForeName><Initials>CA</Initials><AffiliationInfo><Affiliation>Key Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University, Wuhan, 430070, P. R. China. calong@mail.hzau.edu.cn.</Affiliation></AffiliationInfo></Author></AuthorList><Language>ENG</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>Jan</Month><Day>04</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Genomics</MedlineTA><NlmUniqueID>100965258</NlmUniqueID><ISSNLinking>1471-2164</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D003517">Cyclopentanes</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005030">Ethylenes</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D054883">Oxylipins</NameOfSubstance></Chemical><Chemical><RegistryNumber>47E5O17Y3R</RegistryNumber><NameOfSubstance UI="D010649">Phenylalanine</NameOfSubstance></Chemical><Chemical><RegistryNumber>6RI5N05OWW</RegistryNumber><NameOfSubstance UI="C011006">jasmonic acid</NameOfSubstance></Chemical><Chemical><RegistryNumber>91GW059KN7</RegistryNumber><NameOfSubstance UI="C036216">ethylene</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 2.7.12.2</RegistryNumber><NameOfSubstance UI="D020929">Mitogen-Activated Protein Kinase Kinases</NameOfSubstance></Chemical><Chemical><RegistryNumber>ML9LGA7468</RegistryNumber><NameOfSubstance UI="D010626">Phenylethyl Alcohol</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="Cites"><RefSource>EMBO J. 2004 Apr 7;23(7):1647-56</RefSource><PMID Version="1">15044947</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Curr Opin Plant Biol. 2005 Aug;8(4):409-14</RefSource><PMID Version="1">15939661</PMID></CommentsCorrections><CommentsCorrections 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sinensis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D003517" MajorTopicYN="N">Cyclopentanes</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005030" MajorTopicYN="N">Ethylenes</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005638" MajorTopicYN="N">Fruit</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D055322" MajorTopicYN="N">Kloeckera</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="Y">drug effects</QualifierName><QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020929" MajorTopicYN="N">Mitogen-Activated Protein Kinase Kinases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D054883" MajorTopicYN="N">Oxylipins</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010649" MajorTopicYN="N">Phenylalanine</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010626" MajorTopicYN="N">Phenylethyl Alcohol</DescriptorName><QualifierName 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