An evaluation of the basis and consequences of a stay-green mutation in the navel negra citrus mutant using transcriptomic and proteomic profiling and metabolite analysis.
Identifieur interne : 000A42 ( PubMed/Corpus ); précédent : 000A41; suivant : 000A43An evaluation of the basis and consequences of a stay-green mutation in the navel negra citrus mutant using transcriptomic and proteomic profiling and metabolite analysis.
Auteurs : Enriqueta Al S ; María Roca ; Domingo José Iglesias ; Maria Isabel Mínguez-Mosquera ; Cynthia Maria Borges Damasceno ; Theodore William Thannhauser ; Jocelyn Kenneth Campbell Rose ; Manuel Tal N ; Manuel Cerc SSource :
- Plant physiology [ 0032-0889 ] ; 2008.
English descriptors
- KwdEn :
- Arabidopsis Proteins, Carboxylic Ester Hydrolases (metabolism), Chlorophyll (metabolism), Citrus sinensis (genetics), Citrus sinensis (metabolism), Electrophoresis, Gel, Two-Dimensional, Ethylenes (metabolism), Fruit (metabolism), Gene Expression, Gene Expression Profiling, Molecular Sequence Data, Mutation, Oligonucleotide Array Sequence Analysis, Plant Proteins (metabolism), Proteome.
- MESH :
- chemical , metabolism : Carboxylic Ester Hydrolases, Chlorophyll, Ethylenes, Plant Proteins.
- chemical : Arabidopsis Proteins, Proteome.
- genetics : Citrus sinensis.
- metabolism : Citrus sinensis, Fruit.
- Electrophoresis, Gel, Two-Dimensional, Gene Expression, Gene Expression Profiling, Molecular Sequence Data, Mutation, Oligonucleotide Array Sequence Analysis.
Abstract
A Citrus sinensis spontaneous mutant, navel negra (nan), produces fruit with an abnormal brown-colored flavedo during ripening. Analysis of pigment composition in the wild-type and nan flavedo suggested that typical ripening-related chlorophyll (Chl) degradation, but not carotenoid biosynthesis, was impaired in the mutant, identifying nan as a type C stay-green mutant. nan exhibited normal expression of Chl biosynthetic and catabolic genes and chlorophyllase activity but no accumulation of dephytylated Chl compounds during ripening, suggesting that the mutation is not related to a lesion in any of the principal enzymatic steps in Chl catabolism. Transcript profiling using a citrus microarray indicated that a citrus ortholog of a number of SGR (for STAY-GREEN) genes was expressed at substantially lower levels in nan, both prior to and during ripening. However, the pattern of catabolite accumulation and SGR sequence analysis suggested that the nan mutation is distinct from those in previously described stay-green mutants and is associated with an upstream regulatory step, rather than directly influencing a specific component of Chl catabolism. Transcriptomic and comparative proteomic profiling further indicated that the nan mutation resulted in the suppressed expression of numerous photosynthesis-related genes and in the induction of genes that are associated with oxidative stress. These data, along with metabolite analyses, suggest that nan fruit employ a number of molecular mechanisms to compensate for the elevated Chl levels and associated photooxidative stress.
DOI: 10.1104/pp.108.119917
PubMed: 18467459
Links to Exploration step
pubmed:18467459Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">An evaluation of the basis and consequences of a stay-green mutation in the navel negra citrus mutant using transcriptomic and proteomic profiling and metabolite analysis.</title><author><name sortKey="Al S, Enriqueta" sort="Al S, Enriqueta" uniqKey="Al S E" first="Enriqueta" last="Al S">Enriqueta Al S</name><affiliation><nlm:affiliation>Instituto Valenciano de Investigaciones Agrarias, Centro de Genómica, 46113 Moncada, Valencia, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Roca, Maria" sort="Roca, Maria" uniqKey="Roca M" first="María" last="Roca">María Roca</name></author><author><name sortKey="Iglesias, Domingo Jose" sort="Iglesias, Domingo Jose" uniqKey="Iglesias D" first="Domingo José" last="Iglesias">Domingo José Iglesias</name></author><author><name sortKey="Minguez Mosquera, Maria Isabel" sort="Minguez Mosquera, Maria Isabel" uniqKey="Minguez Mosquera M" first="Maria Isabel" last="Mínguez-Mosquera">Maria Isabel Mínguez-Mosquera</name></author><author><name sortKey="Damasceno, Cynthia Maria Borges" sort="Damasceno, Cynthia Maria Borges" uniqKey="Damasceno C" first="Cynthia Maria Borges" last="Damasceno">Cynthia Maria Borges Damasceno</name></author><author><name sortKey="Thannhauser, Theodore William" sort="Thannhauser, Theodore William" uniqKey="Thannhauser T" first="Theodore William" last="Thannhauser">Theodore William Thannhauser</name></author><author><name sortKey="Rose, Jocelyn Kenneth Campbell" sort="Rose, Jocelyn Kenneth Campbell" uniqKey="Rose J" first="Jocelyn Kenneth Campbell" last="Rose">Jocelyn Kenneth Campbell Rose</name></author><author><name sortKey="Tal N, Manuel" sort="Tal N, Manuel" uniqKey="Tal N M" first="Manuel" last="Tal N">Manuel Tal N</name></author><author><name sortKey="Cerc S, Manuel" sort="Cerc S, Manuel" uniqKey="Cerc S M" first="Manuel" last="Cerc S">Manuel Cerc S</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2008">2008</date><idno type="RBID">pubmed:18467459</idno><idno type="pmid">18467459</idno><idno type="doi">10.1104/pp.108.119917</idno><idno type="wicri:Area/PubMed/Corpus">000A42</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">An evaluation of the basis and consequences of a stay-green mutation in the navel negra citrus mutant using transcriptomic and proteomic profiling and metabolite analysis.</title><author><name sortKey="Al S, Enriqueta" sort="Al S, Enriqueta" uniqKey="Al S E" first="Enriqueta" last="Al S">Enriqueta Al S</name><affiliation><nlm:affiliation>Instituto Valenciano de Investigaciones Agrarias, Centro de Genómica, 46113 Moncada, Valencia, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Roca, Maria" sort="Roca, Maria" uniqKey="Roca M" first="María" last="Roca">María Roca</name></author><author><name sortKey="Iglesias, Domingo Jose" sort="Iglesias, Domingo Jose" uniqKey="Iglesias D" first="Domingo José" last="Iglesias">Domingo José Iglesias</name></author><author><name sortKey="Minguez Mosquera, Maria Isabel" sort="Minguez Mosquera, Maria Isabel" uniqKey="Minguez Mosquera M" first="Maria Isabel" last="Mínguez-Mosquera">Maria Isabel Mínguez-Mosquera</name></author><author><name sortKey="Damasceno, Cynthia Maria Borges" sort="Damasceno, Cynthia Maria Borges" uniqKey="Damasceno C" first="Cynthia Maria Borges" last="Damasceno">Cynthia Maria Borges Damasceno</name></author><author><name sortKey="Thannhauser, Theodore William" sort="Thannhauser, Theodore William" uniqKey="Thannhauser T" first="Theodore William" last="Thannhauser">Theodore William Thannhauser</name></author><author><name sortKey="Rose, Jocelyn Kenneth Campbell" sort="Rose, Jocelyn Kenneth Campbell" uniqKey="Rose J" first="Jocelyn Kenneth Campbell" last="Rose">Jocelyn Kenneth Campbell Rose</name></author><author><name sortKey="Tal N, Manuel" sort="Tal N, Manuel" uniqKey="Tal N M" first="Manuel" last="Tal N">Manuel Tal N</name></author><author><name sortKey="Cerc S, Manuel" sort="Cerc S, Manuel" uniqKey="Cerc S M" first="Manuel" last="Cerc S">Manuel Cerc S</name></author></analytic><series><title level="j">Plant physiology</title><idno type="ISSN">0032-0889</idno><imprint><date when="2008" type="published">2008</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Arabidopsis Proteins</term><term>Carboxylic Ester Hydrolases (metabolism)</term><term>Chlorophyll (metabolism)</term><term>Citrus sinensis (genetics)</term><term>Citrus sinensis (metabolism)</term><term>Electrophoresis, Gel, Two-Dimensional</term><term>Ethylenes (metabolism)</term><term>Fruit (metabolism)</term><term>Gene Expression</term><term>Gene Expression Profiling</term><term>Molecular Sequence Data</term><term>Mutation</term><term>Oligonucleotide Array Sequence Analysis</term><term>Plant Proteins (metabolism)</term><term>Proteome</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Carboxylic Ester Hydrolases</term><term>Chlorophyll</term><term>Ethylenes</term><term>Plant Proteins</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Arabidopsis Proteins</term><term>Proteome</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Citrus sinensis</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Citrus sinensis</term><term>Fruit</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Electrophoresis, Gel, Two-Dimensional</term><term>Gene Expression</term><term>Gene Expression Profiling</term><term>Molecular Sequence Data</term><term>Mutation</term><term>Oligonucleotide Array Sequence Analysis</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A Citrus sinensis spontaneous mutant, navel negra (nan), produces fruit with an abnormal brown-colored flavedo during ripening. Analysis of pigment composition in the wild-type and nan flavedo suggested that typical ripening-related chlorophyll (Chl) degradation, but not carotenoid biosynthesis, was impaired in the mutant, identifying nan as a type C stay-green mutant. nan exhibited normal expression of Chl biosynthetic and catabolic genes and chlorophyllase activity but no accumulation of dephytylated Chl compounds during ripening, suggesting that the mutation is not related to a lesion in any of the principal enzymatic steps in Chl catabolism. Transcript profiling using a citrus microarray indicated that a citrus ortholog of a number of SGR (for STAY-GREEN) genes was expressed at substantially lower levels in nan, both prior to and during ripening. However, the pattern of catabolite accumulation and SGR sequence analysis suggested that the nan mutation is distinct from those in previously described stay-green mutants and is associated with an upstream regulatory step, rather than directly influencing a specific component of Chl catabolism. Transcriptomic and comparative proteomic profiling further indicated that the nan mutation resulted in the suppressed expression of numerous photosynthesis-related genes and in the induction of genes that are associated with oxidative stress. These data, along with metabolite analyses, suggest that nan fruit employ a number of molecular mechanisms to compensate for the elevated Chl levels and associated photooxidative stress.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">18467459</PMID><DateCreated><Year>2008</Year><Month>7</Month><Day>9</Day></DateCreated><DateCompleted><Year>2008</Year><Month>09</Month><Day>15</Day></DateCompleted><DateRevised><Year>2014</Year><Month>9</Month><Day>3</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0032-0889</ISSN><JournalIssue CitedMedium="Print"><Volume>147</Volume><Issue>3</Issue><PubDate><Year>2008</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Plant physiology</Title><ISOAbbreviation>Plant Physiol.</ISOAbbreviation></Journal><ArticleTitle>An evaluation of the basis and consequences of a stay-green mutation in the navel negra citrus mutant using transcriptomic and proteomic profiling and metabolite analysis.</ArticleTitle><Pagination><MedlinePgn>1300-15</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1104/pp.108.119917</ELocationID><Abstract><AbstractText>A Citrus sinensis spontaneous mutant, navel negra (nan), produces fruit with an abnormal brown-colored flavedo during ripening. Analysis of pigment composition in the wild-type and nan flavedo suggested that typical ripening-related chlorophyll (Chl) degradation, but not carotenoid biosynthesis, was impaired in the mutant, identifying nan as a type C stay-green mutant. nan exhibited normal expression of Chl biosynthetic and catabolic genes and chlorophyllase activity but no accumulation of dephytylated Chl compounds during ripening, suggesting that the mutation is not related to a lesion in any of the principal enzymatic steps in Chl catabolism. Transcript profiling using a citrus microarray indicated that a citrus ortholog of a number of SGR (for STAY-GREEN) genes was expressed at substantially lower levels in nan, both prior to and during ripening. However, the pattern of catabolite accumulation and SGR sequence analysis suggested that the nan mutation is distinct from those in previously described stay-green mutants and is associated with an upstream regulatory step, rather than directly influencing a specific component of Chl catabolism. Transcriptomic and comparative proteomic profiling further indicated that the nan mutation resulted in the suppressed expression of numerous photosynthesis-related genes and in the induction of genes that are associated with oxidative stress. These data, along with metabolite analyses, suggest that nan fruit employ a number of molecular mechanisms to compensate for the elevated Chl levels and associated photooxidative stress.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Alós</LastName><ForeName>Enriqueta</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Instituto Valenciano de Investigaciones Agrarias, Centro de Genómica, 46113 Moncada, Valencia, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Roca</LastName><ForeName>María</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Iglesias</LastName><ForeName>Domingo José</ForeName><Initials>DJ</Initials></Author><Author ValidYN="Y"><LastName>Mínguez-Mosquera</LastName><ForeName>Maria Isabel</ForeName><Initials>MI</Initials></Author><Author ValidYN="Y"><LastName>Damasceno</LastName><ForeName>Cynthia Maria Borges</ForeName><Initials>CM</Initials></Author><Author ValidYN="Y"><LastName>Thannhauser</LastName><ForeName>Theodore William</ForeName><Initials>TW</Initials></Author><Author ValidYN="Y"><LastName>Rose</LastName><ForeName>Jocelyn Kenneth Campbell</ForeName><Initials>JK</Initials></Author><Author ValidYN="Y"><LastName>Talón</LastName><ForeName>Manuel</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Cercós</LastName><ForeName>Manuel</ForeName><Initials>M</Initials></Author></AuthorList><Language>ENG</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>AM922109</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2008</Year><Month>May</Month><Day>08</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Plant Physiol</MedlineTA><NlmUniqueID>0401224</NlmUniqueID><ISSNLinking>0032-0889</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D029681">Arabidopsis Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="C078410">ELIP protein, Arabidopsis</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005030">Ethylenes</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D020543">Proteome</NameOfSubstance></Chemical><Chemical><RegistryNumber>1406-65-1</RegistryNumber><NameOfSubstance 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MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015870" MajorTopicYN="N">Gene Expression</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009154" MajorTopicYN="N">Mutation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020411" MajorTopicYN="N">Oligonucleotide Array Sequence Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020543" MajorTopicYN="N">Proteome</DescriptorName></MeshHeading></MeshHeadingList><OtherID Source="NLM">PMC2442528</OtherID></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2008</Year><Month>5</Month><Day>10</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2008</Year><Month>9</Month><Day>16</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2008</Year><Month>5</Month><Day>10</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">18467459</ArticleId><ArticleId IdType="pii">pp.108.119917</ArticleId><ArticleId IdType="doi">10.1104/pp.108.119917</ArticleId><ArticleId IdType="pmc">PMC2442528</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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