OrangerV1, PubMed, Corpus, bibRecord, 000853

Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type.

Identifieur interne : 000853 ( PubMed/Corpus ); précédent : 000852; suivant : 000854

Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type.

Auteurs : Qiang Xu ; Yuanlong Liu ; Andan Zhu ; Xiaomeng Wu ; Junli Ye ; Keqin Yu ; Wenwu Guo ; Xiuxin Deng

Source :

BMC genomics [ 1471-2164 ] ; 2010.

RBID : pubmed:20398412

English descriptors

KwdEn :
- Carotenoids, Citrus sinensis (genetics), Gene Expression Profiling, Gene Expression Regulation, Plant, MicroRNAs (analysis), Mutation, RNA, Plant (analysis), Sequence Analysis, DNA (methods).
MESH :
- chemical , analysis : MicroRNAs, RNA, Plant.
- chemical : Carotenoids.
- genetics : Citrus sinensis.
- methods : Sequence Analysis, DNA.
- Gene Expression Profiling, Gene Expression Regulation, Plant, Mutation.

Abstract

Red-flesh fruit is absent from common sweet orange varieties, but is more preferred by consumers due to its visual attraction and nutritional properties. Our previous researches on a spontaneous red-flesh mutant revealed that the trait is caused by lycopene accumulation and is regulated by both transcriptional and post-transcriptional mechanisms. However, the knowledge on post-transcriptional regulation of lycopene accumulation in fruits is rather limited so far.

DOI: 10.1186/1471-2164-11-246
PubMed: 20398412

Links to Exploration step

pubmed:20398412

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type.</title>
<author><name sortKey="Xu, Qiang" sort="Xu, Qiang" uniqKey="Xu Q" first="Qiang" last="Xu">Qiang Xu</name>
<affiliation><nlm:affiliation>Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan 430070, China. xuqiang@mail.hzau.edu.cn</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Liu, Yuanlong" sort="Liu, Yuanlong" uniqKey="Liu Y" first="Yuanlong" last="Liu">Yuanlong Liu</name>
</author>
<author><name sortKey="Zhu, Andan" sort="Zhu, Andan" uniqKey="Zhu A" first="Andan" last="Zhu">Andan Zhu</name>
</author>
<author><name sortKey="Wu, Xiaomeng" sort="Wu, Xiaomeng" uniqKey="Wu X" first="Xiaomeng" last="Wu">Xiaomeng Wu</name>
</author>
<author><name sortKey="Ye, Junli" sort="Ye, Junli" uniqKey="Ye J" first="Junli" last="Ye">Junli Ye</name>
</author>
<author><name sortKey="Yu, Keqin" sort="Yu, Keqin" uniqKey="Yu K" first="Keqin" last="Yu">Keqin Yu</name>
</author>
<author><name sortKey="Guo, Wenwu" sort="Guo, Wenwu" uniqKey="Guo W" first="Wenwu" last="Guo">Wenwu Guo</name>
</author>
<author><name sortKey="Deng, Xiuxin" sort="Deng, Xiuxin" uniqKey="Deng X" first="Xiuxin" last="Deng">Xiuxin Deng</name>
</author>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type.</title>
<author><name sortKey="Xu, Qiang" sort="Xu, Qiang" uniqKey="Xu Q" first="Qiang" last="Xu">Qiang Xu</name>
<affiliation><nlm:affiliation>Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan 430070, China. xuqiang@mail.hzau.edu.cn</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Liu, Yuanlong" sort="Liu, Yuanlong" uniqKey="Liu Y" first="Yuanlong" last="Liu">Yuanlong Liu</name>
</author>
<author><name sortKey="Zhu, Andan" sort="Zhu, Andan" uniqKey="Zhu A" first="Andan" last="Zhu">Andan Zhu</name>
</author>
<author><name sortKey="Wu, Xiaomeng" sort="Wu, Xiaomeng" uniqKey="Wu X" first="Xiaomeng" last="Wu">Xiaomeng Wu</name>
</author>
<author><name sortKey="Ye, Junli" sort="Ye, Junli" uniqKey="Ye J" first="Junli" last="Ye">Junli Ye</name>
</author>
<author><name sortKey="Yu, Keqin" sort="Yu, Keqin" uniqKey="Yu K" first="Keqin" last="Yu">Keqin Yu</name>
</author>
<author><name sortKey="Guo, Wenwu" sort="Guo, Wenwu" uniqKey="Guo W" first="Wenwu" last="Guo">Wenwu Guo</name>
</author>
<author><name sortKey="Deng, Xiuxin" sort="Deng, Xiuxin" uniqKey="Deng X" first="Xiuxin" last="Deng">Xiuxin Deng</name>
</author>
</analytic>
<series><title level="j">BMC genomics</title>
<idno type="eISSN">1471-2164</idno>
<imprint><date when="2010" type="published">2010</date>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Carotenoids</term>
<term>Citrus sinensis (genetics)</term>
<term>Gene Expression Profiling</term>
<term>Gene Expression Regulation, Plant</term>
<term>MicroRNAs (analysis)</term>
<term>Mutation</term>
<term>RNA, Plant (analysis)</term>
<term>Sequence Analysis, DNA (methods)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>MicroRNAs</term>
<term>RNA, Plant</term>
</keywords>
<keywords scheme="MESH" type="chemical" xml:lang="en"><term>Carotenoids</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Citrus sinensis</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term>
<term>Gene Expression Regulation, Plant</term>
<term>Mutation</term>
</keywords>
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</teiHeader>
<front><div type="abstract" xml:lang="en">Red-flesh fruit is absent from common sweet orange varieties, but is more preferred by consumers due to its visual attraction and nutritional properties. Our previous researches on a spontaneous red-flesh mutant revealed that the trait is caused by lycopene accumulation and is regulated by both transcriptional and post-transcriptional mechanisms. However, the knowledge on post-transcriptional regulation of lycopene accumulation in fruits is rather limited so far.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">20398412</PMID>
<DateCreated><Year>2010</Year>
<Month>5</Month>
<Day>5</Day>
</DateCreated>
<DateCompleted><Year>2010</Year>
<Month>07</Month>
<Day>01</Day>
</DateCompleted>
<DateRevised><Year>2014</Year>
<Month>12</Month>
<Day>3</Day>
</DateRevised>
<Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>11</Volume>
<PubDate><Year>2010</Year>
<Month>Apr</Month>
<Day>17</Day>
</PubDate>
</JournalIssue>
<Title>BMC genomics</Title>
<ISOAbbreviation>BMC Genomics</ISOAbbreviation>
</Journal>
<ArticleTitle>Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type.</ArticleTitle>
<Pagination><MedlinePgn>246</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1186/1471-2164-11-246</ELocationID>
<Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Red-flesh fruit is absent from common sweet orange varieties, but is more preferred by consumers due to its visual attraction and nutritional properties. Our previous researches on a spontaneous red-flesh mutant revealed that the trait is caused by lycopene accumulation and is regulated by both transcriptional and post-transcriptional mechanisms. However, the knowledge on post-transcriptional regulation of lycopene accumulation in fruits is rather limited so far.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">We used Illumina sequencing method to identify and quantitatively profile small RNAs on the red-flesh sweet orange mutant and its wild type. We identified 85 known miRNAs belonging to 48 families from sweet orange. Comparative profiling revealed that 51 known miRNAs exhibited significant expression differences between mutant (MT) and wild type (WT). We also identified 12 novel miRNAs by the presence of mature miRNAs and corresponding miRNA*s in the sRNA libraries. Comparative analysis showed that 9 novel miRNAs are differentially expressed between WT and MT. Target predictions of the 60 differential miRNAs resulted 418 target genes in sweet orange. GO and KEGG annotation revealed that high ranked miRNA-target genes are those implicated in transcription regulation, protein modification and photosynthesis. The expression profiles of target genes involved in carotenogenesis and photosynthesis were further confirmed to be complementary to the profiles of corresponding miRNAs in WT and MT.</AbstractText>
<AbstractText Label="CONCLUSION" NlmCategory="CONCLUSIONS">This study comparatively characterized the miRNAomes between the red-flesh mutant and the wild type, the results lay a foundation for unraveling the miRNA-mediated molecular processes that regulate lycopene accumulation in the sweet orange red-flesh mutant.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Xu</LastName>
<ForeName>Qiang</ForeName>
<Initials>Q</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan 430070, China. xuqiang@mail.hzau.edu.cn</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Liu</LastName>
<ForeName>Yuanlong</ForeName>
<Initials>Y</Initials>
</Author>
<Author ValidYN="Y"><LastName>Zhu</LastName>
<ForeName>Andan</ForeName>
<Initials>A</Initials>
</Author>
<Author ValidYN="Y"><LastName>Wu</LastName>
<ForeName>Xiaomeng</ForeName>
<Initials>X</Initials>
</Author>
<Author ValidYN="Y"><LastName>Ye</LastName>
<ForeName>Junli</ForeName>
<Initials>J</Initials>
</Author>
<Author ValidYN="Y"><LastName>Yu</LastName>
<ForeName>Keqin</ForeName>
<Initials>K</Initials>
</Author>
<Author ValidYN="Y"><LastName>Guo</LastName>
<ForeName>Wenwu</ForeName>
<Initials>W</Initials>
</Author>
<Author ValidYN="Y"><LastName>Deng</LastName>
<ForeName>Xiuxin</ForeName>
<Initials>X</Initials>
</Author>
</AuthorList>
<Language>ENG</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2010</Year>
<Month>Apr</Month>
<Day>17</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>BMC Genomics</MedlineTA>
<NlmUniqueID>100965258</NlmUniqueID>
<ISSNLinking>1471-2164</ISSNLinking>
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<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D035683">MicroRNAs</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D018749">RNA, Plant</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>36-88-4</RegistryNumber>
<NameOfSubstance UI="D002338">Carotenoids</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>SB0N2N0WV6</RegistryNumber>
<NameOfSubstance UI="C015329">lycopene</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
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<MeshHeadingList><MeshHeading><DescriptorName UI="D002338" MajorTopicYN="N">Carotenoids</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032084" MajorTopicYN="N">Citrus sinensis</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020869" MajorTopicYN="Y">Gene Expression Profiling</DescriptorName>
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<MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D035683" MajorTopicYN="N">MicroRNAs</DescriptorName>
<QualifierName UI="Q000032" MajorTopicYN="Y">analysis</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009154" MajorTopicYN="N">Mutation</DescriptorName>
</MeshHeading>
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   |texte=   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type.
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Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type.

Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type.

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