OrangerV1, PubMed, Corpus, bibRecord, 000340

Identification of boron-deficiency-responsive microRNAs in Citrus sinensis roots by Illumina sequencing.

Identifieur interne : 000340 ( PubMed/Corpus ); précédent : 000339; suivant : 000341

Identification of boron-deficiency-responsive microRNAs in Citrus sinensis roots by Illumina sequencing.

Auteurs : Yi-Bin Lu ; Lin-Tong Yang ; Yi-Ping Qi ; Yan Li ; Zhong Li ; Yan-Bin Chen ; Zeng-Rong Huang ; Li-Song Chen

Source :

BMC plant biology [ 1471-2229 ] ; 2014.

RBID : pubmed:24885979

English descriptors

KwdEn :
- Boron (deficiency), Citrus sinensis (genetics), Gene Expression Profiling, Gene Expression Regulation, Plant, Gene Ontology, High-Throughput Nucleotide Sequencing (methods), Metabolome (genetics), MicroRNAs (genetics), MicroRNAs (metabolism), Molecular Sequence Annotation, NAD (metabolism), Plant Development (genetics), Plant Leaves (metabolism), Plant Roots (enzymology), Plant Roots (genetics), Proline (metabolism), Real-Time Polymerase Chain Reaction, Reproducibility of Results.
MESH :
- chemical , deficiency : Boron.
- enzymology : Plant Roots.
- genetics : Citrus sinensis, Metabolome, MicroRNAs, Plant Development, Plant Roots.
- chemical , metabolism : MicroRNAs, NAD, Plant Leaves, Proline.
- methods : High-Throughput Nucleotide Sequencing.
- Gene Expression Profiling, Gene Expression Regulation, Plant, Gene Ontology, Molecular Sequence Annotation, Real-Time Polymerase Chain Reaction, Reproducibility of Results.

Abstract

Boron (B)-deficiency is a widespread problem in many crops, including Citrus. MicroRNAs (miRNAs) play important roles in nutrient deficiencies. However, little is known on B-deficiency-responsive miRNAs in plants. In this study, we first identified miRNAs and their expression pattern in B-deficient Citrus sinensis roots by Illumina sequencing in order to identify miRNAs that might be involved in the tolerance of plants to B-deficiency.

DOI: 10.1186/1471-2229-14-123
PubMed: 24885979

Links to Exploration step

pubmed:24885979

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Identification of boron-deficiency-responsive microRNAs in Citrus sinensis roots by Illumina sequencing.</title>
<author><name sortKey="Lu, Yi Bin" sort="Lu, Yi Bin" uniqKey="Lu Y" first="Yi-Bin" last="Lu">Yi-Bin Lu</name>
</author>
<author><name sortKey="Yang, Lin Tong" sort="Yang, Lin Tong" uniqKey="Yang L" first="Lin-Tong" last="Yang">Lin-Tong Yang</name>
</author>
<author><name sortKey="Qi, Yi Ping" sort="Qi, Yi Ping" uniqKey="Qi Y" first="Yi-Ping" last="Qi">Yi-Ping Qi</name>
</author>
<author><name sortKey="Li, Yan" sort="Li, Yan" uniqKey="Li Y" first="Yan" last="Li">Yan Li</name>
</author>
<author><name sortKey="Li, Zhong" sort="Li, Zhong" uniqKey="Li Z" first="Zhong" last="Li">Zhong Li</name>
</author>
<author><name sortKey="Chen, Yan Bin" sort="Chen, Yan Bin" uniqKey="Chen Y" first="Yan-Bin" last="Chen">Yan-Bin Chen</name>
</author>
<author><name sortKey="Huang, Zeng Rong" sort="Huang, Zeng Rong" uniqKey="Huang Z" first="Zeng-Rong" last="Huang">Zeng-Rong Huang</name>
</author>
<author><name sortKey="Chen, Li Song" sort="Chen, Li Song" uniqKey="Chen L" first="Li-Song" last="Chen">Li-Song Chen</name>
<affiliation><nlm:affiliation>College of Resources and Environmental Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China. lisongchen2002@hotmail.com.</nlm:affiliation>
</affiliation>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">Identification of boron-deficiency-responsive microRNAs in Citrus sinensis roots by Illumina sequencing.</title>
<author><name sortKey="Lu, Yi Bin" sort="Lu, Yi Bin" uniqKey="Lu Y" first="Yi-Bin" last="Lu">Yi-Bin Lu</name>
</author>
<author><name sortKey="Yang, Lin Tong" sort="Yang, Lin Tong" uniqKey="Yang L" first="Lin-Tong" last="Yang">Lin-Tong Yang</name>
</author>
<author><name sortKey="Qi, Yi Ping" sort="Qi, Yi Ping" uniqKey="Qi Y" first="Yi-Ping" last="Qi">Yi-Ping Qi</name>
</author>
<author><name sortKey="Li, Yan" sort="Li, Yan" uniqKey="Li Y" first="Yan" last="Li">Yan Li</name>
</author>
<author><name sortKey="Li, Zhong" sort="Li, Zhong" uniqKey="Li Z" first="Zhong" last="Li">Zhong Li</name>
</author>
<author><name sortKey="Chen, Yan Bin" sort="Chen, Yan Bin" uniqKey="Chen Y" first="Yan-Bin" last="Chen">Yan-Bin Chen</name>
</author>
<author><name sortKey="Huang, Zeng Rong" sort="Huang, Zeng Rong" uniqKey="Huang Z" first="Zeng-Rong" last="Huang">Zeng-Rong Huang</name>
</author>
<author><name sortKey="Chen, Li Song" sort="Chen, Li Song" uniqKey="Chen L" first="Li-Song" last="Chen">Li-Song Chen</name>
<affiliation><nlm:affiliation>College of Resources and Environmental Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China. lisongchen2002@hotmail.com.</nlm:affiliation>
</affiliation>
</author>
</analytic>
<series><title level="j">BMC plant biology</title>
<idno type="eISSN">1471-2229</idno>
<imprint><date when="2014" type="published">2014</date>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Boron (deficiency)</term>
<term>Citrus sinensis (genetics)</term>
<term>Gene Expression Profiling</term>
<term>Gene Expression Regulation, Plant</term>
<term>Gene Ontology</term>
<term>High-Throughput Nucleotide Sequencing (methods)</term>
<term>Metabolome (genetics)</term>
<term>MicroRNAs (genetics)</term>
<term>MicroRNAs (metabolism)</term>
<term>Molecular Sequence Annotation</term>
<term>NAD (metabolism)</term>
<term>Plant Development (genetics)</term>
<term>Plant Leaves (metabolism)</term>
<term>Plant Roots (enzymology)</term>
<term>Plant Roots (genetics)</term>
<term>Proline (metabolism)</term>
<term>Real-Time Polymerase Chain Reaction</term>
<term>Reproducibility of Results</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="deficiency" xml:lang="en"><term>Boron</term>
</keywords>
<keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Plant Roots</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Citrus sinensis</term>
<term>Metabolome</term>
<term>MicroRNAs</term>
<term>Plant Development</term>
<term>Plant Roots</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>MicroRNAs</term>
<term>NAD</term>
<term>Plant Leaves</term>
<term>Proline</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>High-Throughput Nucleotide Sequencing</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term>
<term>Gene Expression Regulation, Plant</term>
<term>Gene Ontology</term>
<term>Molecular Sequence Annotation</term>
<term>Real-Time Polymerase Chain Reaction</term>
<term>Reproducibility of Results</term>
</keywords>
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<front><div type="abstract" xml:lang="en">Boron (B)-deficiency is a widespread problem in many crops, including Citrus. MicroRNAs (miRNAs) play important roles in nutrient deficiencies. However, little is known on B-deficiency-responsive miRNAs in plants. In this study, we first identified miRNAs and their expression pattern in B-deficient Citrus sinensis roots by Illumina sequencing in order to identify miRNAs that might be involved in the tolerance of plants to B-deficiency.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24885979</PMID>
<DateCreated><Year>2014</Year>
<Month>6</Month>
<Day>4</Day>
</DateCreated>
<DateCompleted><Year>2015</Year>
<Month>01</Month>
<Day>16</Day>
</DateCompleted>
<DateRevised><Year>2015</Year>
<Month>8</Month>
<Day>5</Day>
</DateRevised>
<Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2229</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>14</Volume>
<PubDate><Year>2014</Year>
<Month>May</Month>
<Day>07</Day>
</PubDate>
</JournalIssue>
<Title>BMC plant biology</Title>
<ISOAbbreviation>BMC Plant Biol.</ISOAbbreviation>
</Journal>
<ArticleTitle>Identification of boron-deficiency-responsive microRNAs in Citrus sinensis roots by Illumina sequencing.</ArticleTitle>
<Pagination><MedlinePgn>123</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1186/1471-2229-14-123</ELocationID>
<Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Boron (B)-deficiency is a widespread problem in many crops, including Citrus. MicroRNAs (miRNAs) play important roles in nutrient deficiencies. However, little is known on B-deficiency-responsive miRNAs in plants. In this study, we first identified miRNAs and their expression pattern in B-deficient Citrus sinensis roots by Illumina sequencing in order to identify miRNAs that might be involved in the tolerance of plants to B-deficiency.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">We isolated 52 (40 known and 12 novel) up-regulated and 82 (72 known and 10 novel) down-regulated miRNAs from B-deficient roots, demonstrating remarkable metabolic flexibility of roots, which might contribute to the tolerance of plants to B-deficiency. A model for the possible roles of miRNAs in the tolerance of roots to B-deficiency was proposed. miRNAs might regulate the adaptations of roots to B-deficiency through following several aspects: (a) inactivating reactive oxygen species (ROS) signaling and scavenging through up-regulating miR474 and down-regulating miR782 and miR843; (b) increasing lateral root number by lowering miR5023 expression and maintaining a certain phenotype favorable for B-deficiency-tolerance by increasing miR394 expression; (c) enhancing cell transport by decreasing the transcripts of miR830, miR5266 and miR3465; (d) improving osmoprotection (miR474) and regulating other metabolic reactions (miR5023 and miR821). Other miRNAs such as miR472 and miR2118 in roots increased in response to B-deficiency, thus decreasing the expression of their target genes, which are involved in disease resistance, and hence, the disease resistance of roots.</AbstractText>
<AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">Our work demonstrates the possible roles of miRNAs and related mechanisms in the response of plant roots to B-deficiency.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lu</LastName>
<ForeName>Yi-Bin</ForeName>
<Initials>YB</Initials>
</Author>
<Author ValidYN="Y"><LastName>Yang</LastName>
<ForeName>Lin-Tong</ForeName>
<Initials>LT</Initials>
</Author>
<Author ValidYN="Y"><LastName>Qi</LastName>
<ForeName>Yi-Ping</ForeName>
<Initials>YP</Initials>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Yan</ForeName>
<Initials>Y</Initials>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Zhong</ForeName>
<Initials>Z</Initials>
</Author>
<Author ValidYN="Y"><LastName>Chen</LastName>
<ForeName>Yan-Bin</ForeName>
<Initials>YB</Initials>
</Author>
<Author ValidYN="Y"><LastName>Huang</LastName>
<ForeName>Zeng-Rong</ForeName>
<Initials>ZR</Initials>
</Author>
<Author ValidYN="Y"><LastName>Chen</LastName>
<ForeName>Li-Song</ForeName>
<Initials>LS</Initials>
<AffiliationInfo><Affiliation>College of Resources and Environmental Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China. lisongchen2002@hotmail.com.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>ENG</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
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<ArticleDate DateType="Electronic"><Year>2014</Year>
<Month>May</Month>
<Day>07</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>BMC Plant Biol</MedlineTA>
<NlmUniqueID>100967807</NlmUniqueID>
<ISSNLinking>1471-2229</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D035683">MicroRNAs</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0U46U6E8UK</RegistryNumber>
<NameOfSubstance UI="D009243">NAD</NameOfSubstance>
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<Chemical><RegistryNumber>9DLQ4CIU6V</RegistryNumber>
<NameOfSubstance UI="D011392">Proline</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>N9E3X5056Q</RegistryNumber>
<NameOfSubstance UI="D001895">Boron</NameOfSubstance>
</Chemical>
</ChemicalList>
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<CommentsCorrections RefType="Cites"><RefSource>Plant Physiol Biochem. 2010 Feb-Mar;48(2-3):153-9</RefSource>
<PMID Version="1">20097571</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Mol Plant. 2010 Mar;3(2):428-37</RefSource>
<PMID Version="1">20147371</PMID>
</CommentsCorrections>
</CommentsCorrectionsList>
<MeshHeadingList><MeshHeading><DescriptorName UI="D001895" MajorTopicYN="N">Boron</DescriptorName>
<QualifierName UI="Q000172" MajorTopicYN="Y">deficiency</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032084" MajorTopicYN="N">Citrus sinensis</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D063990" MajorTopicYN="N">Gene Ontology</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D059014" MajorTopicYN="N">High-Throughput Nucleotide Sequencing</DescriptorName>
<QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D055442" MajorTopicYN="N">Metabolome</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D035683" MajorTopicYN="N">MicroRNAs</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D058977" MajorTopicYN="N">Molecular Sequence Annotation</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009243" MajorTopicYN="N">NAD</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D063245" MajorTopicYN="N">Plant Development</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018515" MajorTopicYN="N">Plant Leaves</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName>
<QualifierName UI="Q000201" MajorTopicYN="N">enzymology</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D011392" MajorTopicYN="N">Proline</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D060888" MajorTopicYN="N">Real-Time Polymerase Chain Reaction</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D015203" MajorTopicYN="N">Reproducibility of Results</DescriptorName>
</MeshHeading>
</MeshHeadingList>
<OtherID Source="NLM">PMC4041134</OtherID>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year>
<Month>1</Month>
<Day>16</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2014</Year>
<Month>4</Month>
<Day>30</Day>
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<PubMedPubDate PubStatus="entrez"><Year>2014</Year>
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<ArticleIdList><ArticleId IdType="pubmed">24885979</ArticleId>
<ArticleId IdType="pii">1471-2229-14-123</ArticleId>
<ArticleId IdType="doi">10.1186/1471-2229-14-123</ArticleId>
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Identification of boron-deficiency-responsive microRNAs in Citrus sinensis roots by Illumina sequencing.

Identification of boron-deficiency-responsive microRNAs in Citrus sinensis roots by Illumina sequencing.

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