Involvements of PCD and changes in gene expression profile during self-pruning of spring shoots in sweet orange (Citrus sinensis).
Identifieur interne : 000284 ( PubMed/Corpus ); précédent : 000283; suivant : 000285Involvements of PCD and changes in gene expression profile during self-pruning of spring shoots in sweet orange (Citrus sinensis).
Auteurs : Jin-Zhi Zhang ; Kun Zhao ; Xiao-Yan Ai ; Chun-Gen HuSource :
- BMC genomics [ 1471-2164 ] ; 2014.
English descriptors
- KwdEn :
- Autophagy, Calcium-Binding Proteins (genetics), Calcium-Binding Proteins (metabolism), Citrus sinensis (genetics), Citrus sinensis (metabolism), Cluster Analysis, DNA, Plant (metabolism), Inhibitor of Apoptosis Proteins (genetics), Inhibitor of Apoptosis Proteins (metabolism), Microscopy, Electron, Transmission, Oligonucleotide Array Sequence Analysis, Plant Proteins (chemistry), Plant Proteins (metabolism), Plant Shoots (genetics), Plant Shoots (metabolism), Reactive Oxygen Species (metabolism), Transcriptome.
- MESH :
- chemical , chemistry : Plant Proteins.
- chemical , genetics : Calcium-Binding Proteins, Inhibitor of Apoptosis Proteins.
- chemical , metabolism : Calcium-Binding Proteins, DNA, Plant, Inhibitor of Apoptosis Proteins, Plant Proteins, Reactive Oxygen Species.
- genetics : Citrus sinensis, Plant Shoots.
- metabolism : Citrus sinensis, Plant Shoots.
- Autophagy, Cluster Analysis, Microscopy, Electron, Transmission, Oligonucleotide Array Sequence Analysis, Transcriptome.
Abstract
Citrus shoot tips abscise at an anatomically distinct abscission zone (AZ) that separates the top part of the shoots into basal and apical portions (citrus self-pruning). Cell separation occurs only at the AZ, which suggests its cells have distinctive molecular regulation. Although several studies have looked into the morphological aspects of self-pruning process, the underlying molecular mechanisms remain unknown.
DOI: 10.1186/1471-2164-15-892
PubMed: 25308090
Links to Exploration step
pubmed:25308090Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Involvements of PCD and changes in gene expression profile during self-pruning of spring shoots in sweet orange (Citrus sinensis).</title><author><name sortKey="Zhang, Jin Zhi" sort="Zhang, Jin Zhi" uniqKey="Zhang J" first="Jin-Zhi" last="Zhang">Jin-Zhi Zhang</name></author><author><name sortKey="Zhao, Kun" sort="Zhao, Kun" uniqKey="Zhao K" first="Kun" last="Zhao">Kun Zhao</name></author><author><name sortKey="Ai, Xiao Yan" sort="Ai, Xiao Yan" uniqKey="Ai X" first="Xiao-Yan" last="Ai">Xiao-Yan Ai</name></author><author><name sortKey="Hu, Chun Gen" sort="Hu, Chun Gen" uniqKey="Hu C" first="Chun-Gen" last="Hu">Chun-Gen Hu</name><affiliation><nlm:affiliation>Key Laboratory of Horticultural Plant Biology (Ministry of Education), College of Horticulture and Forestry Science, Huazhong Agricultural University, Wuhan, 430070, China. chungen@mail.hzau.edu.cn.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2014">2014</date><idno type="RBID">pubmed:25308090</idno><idno type="pmid">25308090</idno><idno type="doi">10.1186/1471-2164-15-892</idno><idno type="wicri:Area/PubMed/Corpus">000284</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Involvements of PCD and changes in gene expression profile during self-pruning of spring shoots in sweet orange (Citrus sinensis).</title><author><name sortKey="Zhang, Jin Zhi" sort="Zhang, Jin Zhi" uniqKey="Zhang J" first="Jin-Zhi" last="Zhang">Jin-Zhi Zhang</name></author><author><name sortKey="Zhao, Kun" sort="Zhao, Kun" uniqKey="Zhao K" first="Kun" last="Zhao">Kun Zhao</name></author><author><name sortKey="Ai, Xiao Yan" sort="Ai, Xiao Yan" uniqKey="Ai X" first="Xiao-Yan" last="Ai">Xiao-Yan Ai</name></author><author><name sortKey="Hu, Chun Gen" sort="Hu, Chun Gen" uniqKey="Hu C" first="Chun-Gen" last="Hu">Chun-Gen Hu</name><affiliation><nlm:affiliation>Key Laboratory of Horticultural Plant Biology (Ministry of Education), College of Horticulture and Forestry Science, Huazhong Agricultural University, Wuhan, 430070, China. chungen@mail.hzau.edu.cn.</nlm:affiliation></affiliation></author></analytic><series><title level="j">BMC genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Autophagy</term><term>Calcium-Binding Proteins (genetics)</term><term>Calcium-Binding Proteins (metabolism)</term><term>Citrus sinensis (genetics)</term><term>Citrus sinensis (metabolism)</term><term>Cluster Analysis</term><term>DNA, Plant (metabolism)</term><term>Inhibitor of Apoptosis Proteins (genetics)</term><term>Inhibitor of Apoptosis Proteins (metabolism)</term><term>Microscopy, Electron, Transmission</term><term>Oligonucleotide Array Sequence Analysis</term><term>Plant Proteins (chemistry)</term><term>Plant Proteins (metabolism)</term><term>Plant Shoots (genetics)</term><term>Plant Shoots (metabolism)</term><term>Reactive Oxygen Species (metabolism)</term><term>Transcriptome</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Plant Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Calcium-Binding Proteins</term><term>Inhibitor of Apoptosis Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Calcium-Binding Proteins</term><term>DNA, Plant</term><term>Inhibitor of Apoptosis Proteins</term><term>Plant Proteins</term><term>Reactive Oxygen Species</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Citrus sinensis</term><term>Plant Shoots</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Citrus sinensis</term><term>Plant Shoots</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Autophagy</term><term>Cluster Analysis</term><term>Microscopy, Electron, Transmission</term><term>Oligonucleotide Array Sequence Analysis</term><term>Transcriptome</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Citrus shoot tips abscise at an anatomically distinct abscission zone (AZ) that separates the top part of the shoots into basal and apical portions (citrus self-pruning). Cell separation occurs only at the AZ, which suggests its cells have distinctive molecular regulation. Although several studies have looked into the morphological aspects of self-pruning process, the underlying molecular mechanisms remain unknown.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25308090</PMID><DateCreated><Year>2014</Year><Month>10</Month><Day>21</Day></DateCreated><DateCompleted><Year>2015</Year><Month>06</Month><Day>11</Day></DateCompleted><DateRevised><Year>2015</Year><Month>10</Month><Day>29</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN><JournalIssue CitedMedium="Internet"><Volume>15</Volume><PubDate><Year>2014</Year><Month>Oct</Month><Day>13</Day></PubDate></JournalIssue><Title>BMC genomics</Title><ISOAbbreviation>BMC Genomics</ISOAbbreviation></Journal><ArticleTitle>Involvements of PCD and changes in gene expression profile during self-pruning of spring shoots in sweet orange (Citrus sinensis).</ArticleTitle><Pagination><MedlinePgn>892</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/1471-2164-15-892</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Citrus shoot tips abscise at an anatomically distinct abscission zone (AZ) that separates the top part of the shoots into basal and apical portions (citrus self-pruning). Cell separation occurs only at the AZ, which suggests its cells have distinctive molecular regulation. Although several studies have looked into the morphological aspects of self-pruning process, the underlying molecular mechanisms remain unknown.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">In this study, the hallmarks of programmed cell death (PCD) were identified by TUNEL experiments, transmission electron microscopy (TEM) and histochemical staining for reactive oxygen species (ROS) during self-pruning of the spring shoots in sweet orange. Our results indicated that PCD occurred systematically and progressively and may play an important role in the control of self-pruning of citrus. Microarray analysis was used to examine transcriptome changes at three stages of self-pruning, and 1,378 differentially expressed genes were identified. Some genes were related to PCD, while others were associated with cell wall biosynthesis or metabolism. These results strongly suggest that abscission layers activate both catabolic and anabolic wall modification pathways during the self-pruning process. In addition, a strong correlation was observed between self-pruning and the expression of hormone-related genes. Self-pruning plays an important role in citrus floral bud initiation. Therefore, several key flowering homologs of Arabidopsis and tomato shoot apical meristem (SAM) activity genes were investigated in sweet orange by real-time PCR and in situ hybridization, and the results indicated that these genes were preferentially expressed in SAM as well as axillary meristem.</AbstractText><AbstractText Label="CONCLUSION" NlmCategory="CONCLUSIONS">Based on these findings, a model for sweet orange spring shoot self-pruning is proposed, which will enable us to better understand the mechanism of self-pruning and abscission.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Jin-Zhi</ForeName><Initials>JZ</Initials></Author><Author ValidYN="Y"><LastName>Zhao</LastName><ForeName>Kun</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Ai</LastName><ForeName>Xiao-Yan</ForeName><Initials>XY</Initials></Author><Author ValidYN="Y"><LastName>Hu</LastName><ForeName>Chun-Gen</ForeName><Initials>CG</Initials><AffiliationInfo><Affiliation>Key Laboratory of Horticultural Plant Biology (Ministry of Education), College of Horticulture and Forestry Science, Huazhong Agricultural University, Wuhan, 430070, China. chungen@mail.hzau.edu.cn.</Affiliation></AffiliationInfo></Author></AuthorList><Language>ENG</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>Oct</Month><Day>13</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Genomics</MedlineTA><NlmUniqueID>100965258</NlmUniqueID><ISSNLinking>1471-2164</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D002135">Calcium-Binding Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018744">DNA, Plant</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D051034">Inhibitor of Apoptosis Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D017382">Reactive Oxygen Species</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="Cites"><RefSource>Plant Physiol. 2012 Apr;158(4):2053-67</RefSource><PMID Version="1">22362870</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Plant Physiol. 2012 Jan;158(1):439-50</RefSource><PMID Version="1">22106095</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>J Exp Bot. 2012 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MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D051034" MajorTopicYN="N">Inhibitor of Apoptosis Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D046529" MajorTopicYN="N">Microscopy, Electron, Transmission</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020411" MajorTopicYN="N">Oligonucleotide Array Sequence Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018520" MajorTopicYN="N">Plant Shoots</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017382" MajorTopicYN="N">Reactive Oxygen Species</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D059467" MajorTopicYN="Y">Transcriptome</DescriptorName></MeshHeading></MeshHeadingList><OtherID Source="NLM">PMC4209071</OtherID></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year><Month>5</Month><Day>27</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2014</Year><Month>9</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2014</Year><Month>10</Month><Day>14</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2014</Year><Month>10</Month><Day>14</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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