Transcriptional profile of sweet orange in response to chitosan and salicylic acid.
Identifieur interne : 000188 ( PubMed/Corpus ); précédent : 000187; suivant : 000189Transcriptional profile of sweet orange in response to chitosan and salicylic acid.
Auteurs : Danila Souza Oliveira Coqueiro ; Alessandra Alves De Souza ; Marco Aurélio Takita ; Carolina Munari Rodrigues ; Luciano Takeshi Kishi ; Marcos Antonio MachadoSource :
- BMC genomics [ 1471-2164 ] ; 2015.
English descriptors
- KwdEn :
- Chitosan (pharmacology), Citrus sinensis (drug effects), Citrus sinensis (genetics), Citrus sinensis (metabolism), Down-Regulation (drug effects), Gene Expression Profiling, Genes, Plant, Oxidation-Reduction, Plant Growth Regulators (metabolism), Plant Leaves (drug effects), Plant Leaves (genetics), Plant Leaves (metabolism), RNA (analysis), RNA (isolation & purification), RNA (metabolism), Salicylic Acid (pharmacology), Sequence Analysis, RNA, Signal Transduction (drug effects), Transcription Factors (metabolism), Up-Regulation (drug effects).
- MESH :
- chemical , analysis : RNA.
- chemical , isolation & purification : RNA.
- chemical , metabolism : Plant Growth Regulators, RNA, Transcription Factors.
- chemical , pharmacology : Chitosan, Salicylic Acid.
- drug effects : Citrus sinensis, Down-Regulation, Plant Leaves, Signal Transduction, Up-Regulation.
- genetics : Citrus sinensis, Plant Leaves.
- metabolism : Citrus sinensis, Plant Leaves.
- Gene Expression Profiling, Genes, Plant, Oxidation-Reduction, Sequence Analysis, RNA.
Abstract
Resistance inducers have been used in annual crops as an alternative for disease control. Wood perennial fruit trees, such as those of the citrus species, are candidates for treatment with resistance inducers, such as salicylic acid (SA) and chitosan (CHI). However, the involved mechanisms in resistance induced by elicitors in citrus are currently few known.
DOI: 10.1186/s12864-015-1440-5
PubMed: 25887907
Links to Exploration step
pubmed:25887907Le document en format XML
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sort="Takita, Marco Aurelio" uniqKey="Takita M" first="Marco Aurélio" last="Takita">Marco Aurélio Takita</name><affiliation><nlm:affiliation>Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo, Brasil. takita@centrodecitricultura.br.</nlm:affiliation></affiliation></author><author><name sortKey="Rodrigues, Carolina Munari" sort="Rodrigues, Carolina Munari" uniqKey="Rodrigues C" first="Carolina Munari" last="Rodrigues">Carolina Munari Rodrigues</name><affiliation><nlm:affiliation>Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo, Brasil. carolina@centrodecitricultura.br.</nlm:affiliation></affiliation></author><author><name sortKey="Kishi, Luciano Takeshi" sort="Kishi, Luciano Takeshi" uniqKey="Kishi L" first="Luciano Takeshi" last="Kishi">Luciano Takeshi Kishi</name><affiliation><nlm:affiliation>Universidade Federal de São Carlos, São Carlos, São Paulo, Brasil. luciano.kishi@gmail.com.</nlm:affiliation></affiliation></author><author><name sortKey="Machado, Marcos Antonio" sort="Machado, Marcos Antonio" uniqKey="Machado M" first="Marcos Antonio" last="Machado">Marcos Antonio Machado</name><affiliation><nlm:affiliation>Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo, Brasil. marcos@centrodecitricultura.br.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2015">2015</date><idno type="RBID">pubmed:25887907</idno><idno type="pmid">25887907</idno><idno type="doi">10.1186/s12864-015-1440-5</idno><idno type="wicri:Area/PubMed/Corpus">000188</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Transcriptional profile of sweet orange in response to chitosan and salicylic acid.</title><author><name sortKey="Coqueiro, Danila Souza Oliveira" sort="Coqueiro, Danila Souza Oliveira" uniqKey="Coqueiro D" first="Danila Souza Oliveira" last="Coqueiro">Danila Souza Oliveira Coqueiro</name><affiliation><nlm:affiliation>Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo, Brasil. danilasoc@yahoo.com.br.</nlm:affiliation></affiliation></author><author><name sortKey="De Souza, Alessandra Alves" sort="De Souza, Alessandra Alves" uniqKey="De Souza A" first="Alessandra Alves" last="De Souza">Alessandra Alves De Souza</name><affiliation><nlm:affiliation>Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo, Brasil. alessandra@centrodecitricultura.br.</nlm:affiliation></affiliation></author><author><name sortKey="Takita, Marco Aurelio" sort="Takita, Marco Aurelio" uniqKey="Takita M" first="Marco Aurélio" last="Takita">Marco Aurélio Takita</name><affiliation><nlm:affiliation>Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo, Brasil. takita@centrodecitricultura.br.</nlm:affiliation></affiliation></author><author><name sortKey="Rodrigues, Carolina Munari" sort="Rodrigues, Carolina Munari" uniqKey="Rodrigues C" first="Carolina Munari" last="Rodrigues">Carolina Munari Rodrigues</name><affiliation><nlm:affiliation>Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo, Brasil. carolina@centrodecitricultura.br.</nlm:affiliation></affiliation></author><author><name sortKey="Kishi, Luciano Takeshi" sort="Kishi, Luciano Takeshi" uniqKey="Kishi L" first="Luciano Takeshi" last="Kishi">Luciano Takeshi Kishi</name><affiliation><nlm:affiliation>Universidade Federal de São Carlos, São Carlos, São Paulo, Brasil. luciano.kishi@gmail.com.</nlm:affiliation></affiliation></author><author><name sortKey="Machado, Marcos Antonio" sort="Machado, Marcos Antonio" uniqKey="Machado M" first="Marcos Antonio" last="Machado">Marcos Antonio Machado</name><affiliation><nlm:affiliation>Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo, Brasil. marcos@centrodecitricultura.br.</nlm:affiliation></affiliation></author></analytic><series><title level="j">BMC genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Chitosan (pharmacology)</term><term>Citrus sinensis (drug effects)</term><term>Citrus sinensis (genetics)</term><term>Citrus sinensis (metabolism)</term><term>Down-Regulation (drug effects)</term><term>Gene Expression Profiling</term><term>Genes, Plant</term><term>Oxidation-Reduction</term><term>Plant Growth Regulators (metabolism)</term><term>Plant Leaves (drug effects)</term><term>Plant Leaves (genetics)</term><term>Plant Leaves (metabolism)</term><term>RNA (analysis)</term><term>RNA (isolation & purification)</term><term>RNA (metabolism)</term><term>Salicylic Acid (pharmacology)</term><term>Sequence Analysis, RNA</term><term>Signal Transduction (drug effects)</term><term>Transcription Factors (metabolism)</term><term>Up-Regulation (drug effects)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>RNA</term></keywords><keywords scheme="MESH" type="chemical" qualifier="isolation & purification" xml:lang="en"><term>RNA</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Plant Growth Regulators</term><term>RNA</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Chitosan</term><term>Salicylic Acid</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Citrus sinensis</term><term>Down-Regulation</term><term>Plant Leaves</term><term>Signal Transduction</term><term>Up-Regulation</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Citrus sinensis</term><term>Plant Leaves</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Citrus sinensis</term><term>Plant Leaves</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term><term>Genes, Plant</term><term>Oxidation-Reduction</term><term>Sequence Analysis, RNA</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Resistance inducers have been used in annual crops as an alternative for disease control. Wood perennial fruit trees, such as those of the citrus species, are candidates for treatment with resistance inducers, such as salicylic acid (SA) and chitosan (CHI). However, the involved mechanisms in resistance induced by elicitors in citrus are currently few known.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25887907</PMID><DateCreated><Year>2015</Year><Month>5</Month><Day>1</Day></DateCreated><DateCompleted><Year>2016</Year><Month>01</Month><Day>25</Day></DateCompleted><DateRevised><Year>2015</Year><Month>5</Month><Day>1</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN><JournalIssue CitedMedium="Internet"><Volume>16</Volume><PubDate><Year>2015</Year><Month>Apr</Month><Day>12</Day></PubDate></JournalIssue><Title>BMC genomics</Title><ISOAbbreviation>BMC Genomics</ISOAbbreviation></Journal><ArticleTitle>Transcriptional profile of sweet orange in response to chitosan and salicylic acid.</ArticleTitle><Pagination><MedlinePgn>288</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s12864-015-1440-5</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Resistance inducers have been used in annual crops as an alternative for disease control. Wood perennial fruit trees, such as those of the citrus species, are candidates for treatment with resistance inducers, such as salicylic acid (SA) and chitosan (CHI). However, the involved mechanisms in resistance induced by elicitors in citrus are currently few known.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">In the present manuscript, we report information regarding the transcriptional changes observed in sweet orange in response to exogenous applications of SA and CHI using RNA-seq technology. More genes were induced by SA treatment than by CHI treatment. In total, 1,425 differentially expressed genes (DEGs) were identified following treatment with SA, including the important genes WRKY50, PR2, and PR9, which are known to participate in the salicylic acid signaling pathway, and genes involved in ethylene/Jasmonic acid biosynthesis (ACS12, AP2 domain-containing transcription factor, and OPR3). In addition, SA treatment promoted the induction of a subset of genes involved in several metabolic processes, such as redox states and secondary metabolism, which are associated with biotic stress. For CHI treatment, there were 640 DEGs, many of them involved in secondary metabolism. For both SA and CHI treatments, the auxin pathway genes were repressed, but SA treatment promoted induction in the ethylene and jasmonate acid pathway genes, in addition to repressing the abscisic acid pathway genes. Chitosan treatment altered some hormone metabolism pathways. The DEGs were validated by quantitative Real-Time PCR (qRT-PCR), and the results were consistent with the RNA-seq data, with a high correlation between the two analyses.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">We expanded the available information regarding induced defense by elicitors in a species of Citrus that is susceptible to various diseases and identified the molecular mechanisms by which this defense might be mediated.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Coqueiro</LastName><ForeName>Danila Souza Oliveira</ForeName><Initials>DS</Initials><AffiliationInfo><Affiliation>Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo, Brasil. danilasoc@yahoo.com.br.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Universidade Federal da Bahia, UFBA, Vitória da Conquista, Bahia, Brasil. danilasoc@yahoo.com.br.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>de Souza</LastName><ForeName>Alessandra Alves</ForeName><Initials>AA</Initials><AffiliationInfo><Affiliation>Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo, Brasil. alessandra@centrodecitricultura.br.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Takita</LastName><ForeName>Marco Aurélio</ForeName><Initials>MA</Initials><AffiliationInfo><Affiliation>Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo, Brasil. takita@centrodecitricultura.br.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rodrigues</LastName><ForeName>Carolina Munari</ForeName><Initials>CM</Initials><AffiliationInfo><Affiliation>Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo, Brasil. carolina@centrodecitricultura.br.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kishi</LastName><ForeName>Luciano Takeshi</ForeName><Initials>LT</Initials><AffiliationInfo><Affiliation>Universidade Federal de São Carlos, São Carlos, São Paulo, Brasil. luciano.kishi@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Machado</LastName><ForeName>Marcos Antonio</ForeName><Initials>MA</Initials><AffiliationInfo><Affiliation>Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo, Brasil. marcos@centrodecitricultura.br.</Affiliation></AffiliationInfo></Author></AuthorList><Language>ENG</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>Apr</Month><Day>12</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Genomics</MedlineTA><NlmUniqueID>100965258</NlmUniqueID><ISSNLinking>1471-2164</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010937">Plant Growth Regulators</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014157">Transcription Factors</NameOfSubstance></Chemical><Chemical><RegistryNumber>63231-63-0</RegistryNumber><NameOfSubstance UI="D012313">RNA</NameOfSubstance></Chemical><Chemical><RegistryNumber>9012-76-4</RegistryNumber><NameOfSubstance UI="D048271">Chitosan</NameOfSubstance></Chemical><Chemical><RegistryNumber>O414PZ4LPZ</RegistryNumber><NameOfSubstance UI="D020156">Salicylic Acid</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="Cites"><RefSource>Mol Plant Microbe Interact. 1999 Nov;12(11):1022-6</RefSource><PMID Version="1">10550898</PMID></CommentsCorrections><CommentsCorrections 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UI="Q000494" MajorTopicYN="Y">pharmacology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032084" MajorTopicYN="N">Citrus sinensis</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015536" MajorTopicYN="N">Down-Regulation</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="Y">drug effects</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="Y">Genes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010084" MajorTopicYN="N">Oxidation-Reduction</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010937" MajorTopicYN="N">Plant Growth Regulators</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018515" MajorTopicYN="N">Plant Leaves</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012313" MajorTopicYN="N">RNA</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020156" MajorTopicYN="N">Salicylic Acid</DescriptorName><QualifierName UI="Q000494" MajorTopicYN="Y">pharmacology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017423" MajorTopicYN="N">Sequence Analysis, RNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015398" MajorTopicYN="N">Signal Transduction</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014157" MajorTopicYN="N">Transcription Factors</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015854" MajorTopicYN="N">Up-Regulation</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="Y">drug effects</QualifierName></MeshHeading></MeshHeadingList><OtherID Source="NLM">PMC4415254</OtherID></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year><Month>7</Month><Day>17</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>3</Month><Day>6</Day></PubMedPubDate><PubMedPubDate 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