Genome-wide classification and evolutionary and expression analyses of citrus MYB transcription factor families in sweet orange.
Identifieur interne : 000335 ( PubMed/Checkpoint ); précédent : 000334; suivant : 000336Genome-wide classification and evolutionary and expression analyses of citrus MYB transcription factor families in sweet orange.
Auteurs : Xiao-Jin Hou [République populaire de Chine] ; Si-Bei Li [République populaire de Chine] ; Sheng-Rui Liu [République populaire de Chine] ; Chun-Gen Hu [République populaire de Chine] ; Jin-Zhi Zhang [République populaire de Chine]Source :
- PloS one [ 1932-6203 ] ; 2014.
English descriptors
- KwdEn :
- Citrus sinensis (genetics), Citrus sinensis (metabolism), Gene Expression Regulation, Plant (physiology), Genome-Wide Association Study, Multigene Family (physiology), Plant Proteins (biosynthesis), Plant Proteins (classification), Plant Proteins (genetics), Transcription Factors (biosynthesis), Transcription Factors (classification), Transcription Factors (genetics).
- MESH :
- chemical , biosynthesis : Plant Proteins, Transcription Factors.
- chemical , classification : Plant Proteins, Transcription Factors.
- genetics : Citrus sinensis, Plant Proteins, Transcription Factors.
- metabolism : Citrus sinensis.
- physiology : Gene Expression Regulation, Plant, Multigene Family.
- Genome-Wide Association Study.
Abstract
MYB family genes are widely distributed in plants and comprise one of the largest transcription factors involved in various developmental processes and defense responses of plants. To date, few MYB genes and little expression profiling have been reported for citrus. Here, we describe and classify 177 members of the sweet orange MYB gene (CsMYB) family in terms of their genomic gene structures and similarity to their putative Arabidopsis orthologs. According to these analyses, these CsMYBs were categorized into four groups (4R-MYB, 3R-MYB, 2R-MYB and 1R-MYB). Gene structure analysis revealed that 1R-MYB genes possess relatively more introns as compared with 2R-MYB genes. Investigation of their chromosomal localizations revealed that these CsMYBs are distributed across nine chromosomes. Sweet orange includes a relatively small number of MYB genes compared with the 198 members in Arabidopsis, presumably due to a paralog reduction related to repetitive sequence insertion into promoter and non-coding transcribed region of the genes. Comparative studies of CsMYBs and Arabidopsis showed that CsMYBs had fewer gene duplication events. Expression analysis revealed that the MYB gene family has a wide expression profile in sweet orange development and plays important roles in development and stress responses. In addition, 337 new putative microsatellites with flanking sequences sufficient for primer design were also identified from the 177 CsMYBs. These results provide a useful reference for the selection of candidate MYB genes for cloning and further functional analysis forcitrus.
DOI: 10.1371/journal.pone.0112375
PubMed: 25375352
Affiliations:
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pubmed:25375352Le document en format XML
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<front><div type="abstract" xml:lang="en">MYB family genes are widely distributed in plants and comprise one of the largest transcription factors involved in various developmental processes and defense responses of plants. To date, few MYB genes and little expression profiling have been reported for citrus. Here, we describe and classify 177 members of the sweet orange MYB gene (CsMYB) family in terms of their genomic gene structures and similarity to their putative Arabidopsis orthologs. According to these analyses, these CsMYBs were categorized into four groups (4R-MYB, 3R-MYB, 2R-MYB and 1R-MYB). Gene structure analysis revealed that 1R-MYB genes possess relatively more introns as compared with 2R-MYB genes. Investigation of their chromosomal localizations revealed that these CsMYBs are distributed across nine chromosomes. Sweet orange includes a relatively small number of MYB genes compared with the 198 members in Arabidopsis, presumably due to a paralog reduction related to repetitive sequence insertion into promoter and non-coding transcribed region of the genes. Comparative studies of CsMYBs and Arabidopsis showed that CsMYBs had fewer gene duplication events. Expression analysis revealed that the MYB gene family has a wide expression profile in sweet orange development and plays important roles in development and stress responses. In addition, 337 new putative microsatellites with flanking sequences sufficient for primer design were also identified from the 177 CsMYBs. These results provide a useful reference for the selection of candidate MYB genes for cloning and further functional analysis forcitrus.</div>
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<Abstract><AbstractText>MYB family genes are widely distributed in plants and comprise one of the largest transcription factors involved in various developmental processes and defense responses of plants. To date, few MYB genes and little expression profiling have been reported for citrus. Here, we describe and classify 177 members of the sweet orange MYB gene (CsMYB) family in terms of their genomic gene structures and similarity to their putative Arabidopsis orthologs. According to these analyses, these CsMYBs were categorized into four groups (4R-MYB, 3R-MYB, 2R-MYB and 1R-MYB). Gene structure analysis revealed that 1R-MYB genes possess relatively more introns as compared with 2R-MYB genes. Investigation of their chromosomal localizations revealed that these CsMYBs are distributed across nine chromosomes. Sweet orange includes a relatively small number of MYB genes compared with the 198 members in Arabidopsis, presumably due to a paralog reduction related to repetitive sequence insertion into promoter and non-coding transcribed region of the genes. Comparative studies of CsMYBs and Arabidopsis showed that CsMYBs had fewer gene duplication events. Expression analysis revealed that the MYB gene family has a wide expression profile in sweet orange development and plays important roles in development and stress responses. In addition, 337 new putative microsatellites with flanking sequences sufficient for primer design were also identified from the 177 CsMYBs. These results provide a useful reference for the selection of candidate MYB genes for cloning and further functional analysis forcitrus.</AbstractText>
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<CommentsCorrectionsList><CommentsCorrections RefType="Cites"><RefSource>New Phytol. 2010 Apr;186(2):471-83</RefSource>
<PMID Version="1">20149112</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Trends Plant Sci. 2010 Oct;15(10):573-81</RefSource>
<PMID Version="1">20674465</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Plant J. 2011 Apr;66(1):94-116</RefSource>
<PMID Version="1">21443626</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Plant Mol Biol. 2011 May;76(1-2):187-204</RefSource>
<PMID Version="1">21533840</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Plant Cell. 2011 Jun;23(6):2010-32</RefSource>
<PMID Version="1">21642548</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Gene. 2004 Feb 4;326:13-22</RefSource>
<PMID Version="1">14729259</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>EMBO J. 1987 Dec 1;6(12):3553-8</RefSource>
<PMID Version="1">3428265</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Mol Biol Evol. 1994 Sep;11(5):725-36</RefSource>
<PMID Version="1">7968486</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nat Genet. 2013 Jan;45(1):59-66</RefSource>
<PMID Version="1">23179022</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>BMC Genomics. 2012;13:544</RefSource>
<PMID Version="1">23050870</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):2401-6</RefSource>
<PMID Version="1">23341595</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nat Commun. 2013;4:1941</RefSource>
<PMID Version="1">23770768</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>DNA Res. 2013 Oct;20(5):437-48</RefSource>
<PMID Version="1">23690543</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>PLoS One. 2013;8(10):e75149</RefSource>
<PMID Version="1">24204572</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Physiol Plant. 2014 Jan;150(1):76-87</RefSource>
<PMID Version="1">23647377</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>PLoS One. 2014;9(1):e87723</RefSource>
<PMID Version="1">24489955</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>DNA Res. 2014 Jun;21(3):327-39</RefSource>
<PMID Version="1">24453041</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nat Biotechnol. 2014 Jul;32(7):656-62</RefSource>
<PMID Version="1">24908277</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Plant J. 2004 Jan;37(1):115-27</RefSource>
<PMID Version="1">14675437</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Cell. 1999 Nov 24;99(5):473-83</RefSource>
<PMID Version="1">10589676</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Plant Mol Biol. 1999 Nov;41(5):577-85</RefSource>
<PMID Version="1">10645718</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Plant Cell. 2000 Dec;12(12):2311-2322</RefSource>
<PMID Version="1">11148280</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Bioinformatics. 2000 Nov;16(11):1040-1</RefSource>
<PMID Version="1">11159316</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Genome Res. 2001 Aug;11(8):1441-52</RefSource>
<PMID Version="1">11483586</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Mol Biol Evol. 2002 Mar;19(3):256-62</RefSource>
<PMID Version="1">11861885</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>J Hered. 2002 Jan-Feb;93(1):77-8</RefSource>
<PMID Version="1">12011185</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Proc Natl Acad Sci U S A. 2002 Jul 23;99(15):10179-84</RefSource>
<PMID Version="1">12119395</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Genome Res. 2002 Sep;12(9):1305-15</RefSource>
<PMID Version="1">12213767</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Plant Physiol. 2003 Feb;131(2):610-20</RefSource>
<PMID Version="1">12586885</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Plant Mol Biol. 2004 Sep;56(2):255-70</RefSource>
<PMID Version="1">15604742</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Plant Cell. 2005 Mar;17(3):705-21</RefSource>
<PMID Version="1">15722475</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>J Exp Bot. 2012 Jan;63(1):203-14</RefSource>
<PMID Version="1">21934119</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Mol Genet Genomics. 2012 Oct;287(10):765-84</RefSource>
<PMID Version="1">22915303</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nucleic Acids Res. 1994 Nov 11;22(22):4673-80</RefSource>
<PMID Version="1">7984417</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Proc Int Conf Intell Syst Mol Biol. 1995;3:21-9</RefSource>
<PMID Version="1">7584439</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Oncogene. 1996 Jul 18;13(2):223-35</RefSource>
<PMID Version="1">8710361</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Proc Natl Acad Sci U S A. 1996 Sep 17;93(19):10274-9</RefSource>
<PMID Version="1">8816790</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>J Mol Evol. 1998 Jan;46(1):74-83</RefSource>
<PMID Version="1">9419227</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nucleic Acids Res. 1999 Jan 15;27(2):573-80</RefSource>
<PMID Version="1">9862982</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Bioinformatics. 2005 Sep 15;21(18):3674-6</RefSource>
<PMID Version="1">16081474</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Trends Genet. 2005 Oct;21(10):539-43</RefSource>
<PMID Version="1">16098633</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nucleic Acids Res. 2006 Jan 1;34(Database issue):D247-51</RefSource>
<PMID Version="1">16381856</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Mol Biol Evol. 2006 Feb;23(2):469-78</RefSource>
<PMID Version="1">16280546</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Plant Mol Biol. 2006 Jan;60(1):107-24</RefSource>
<PMID Version="1">16463103</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Plant Cell. 2006 Mar;18(3):598-611</RefSource>
<PMID Version="1">16473968</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Trends Genet. 2006 May;22(5):253-9</RefSource>
<PMID Version="1">16567018</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Plant J. 2006 Jun;46(6):984-1008</RefSource>
<PMID Version="1">16805732</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Development. 2007 Mar;134(6):1101-10</RefSource>
<PMID Version="1">17287251</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Plant Physiol. 2007 Apr;143(4):1739-51</RefSource>
<PMID Version="1">17293435</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Development. 2007 May;134(9):1691-701</RefSource>
<PMID Version="1">17376813</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Mol Biol Evol. 2007 Aug;24(8):1586-91</RefSource>
<PMID Version="1">17483113</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Mol Biol Evol. 2007 Aug;24(8):1596-9</RefSource>
<PMID Version="1">17488738</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Yi Chuan. 2007 Aug;29(8):1023-6</RefSource>
<PMID Version="1">17681935</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Proc Natl Acad Sci U S A. 2007 Oct 9;104(41):16371-6</RefSource>
<PMID Version="1">17916625</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>PLoS One. 2007;2(12):e1326</RefSource>
<PMID Version="1">18094749</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Trends Plant Sci. 2008 Mar;13(3):99-102</RefSource>
<PMID Version="1">18280199</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Curr Biol. 2008 May 20;18(10):758-62</RefSource>
<PMID Version="1">18472421</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nat Methods. 2008 Jul;5(7):621-8</RefSource>
<PMID Version="1">18516045</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>BMC Plant Biol. 2008;8:83</RefSource>
<PMID Version="1">18647406</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Tree Physiol. 2008 Oct;28(10):1449-57</RefSource>
<PMID Version="1">18708326</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Plant J. 2008 Aug;55(3):361-71</RefSource>
<PMID Version="1">18397371</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Plant Physiol. 2008 Nov;148(3):1583-602</RefSource>
<PMID Version="1">18805951</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Plant Physiol. 2009 Feb;149(2):981-93</RefSource>
<PMID Version="1">19091872</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Biochemistry (Mosc). 2009 Jan;74(1):1-11</RefSource>
<PMID Version="1">19232042</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Annu Rev Plant Biol. 2009;60:43-66</RefSource>
<PMID Version="1">19007329</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Genome Res. 2009 Aug;19(8):1497-505</RefSource>
<PMID Version="1">19465509</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Genome Biol. 2009;10(11):R120</RefSource>
<PMID Version="1">19883501</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nature. 2010 Feb 11;463(7282):763-8</RefSource>
<PMID Version="1">20148030</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Trends Plant Sci. 2010 Feb;15(2):57-71</RefSource>
<PMID Version="1">20080432</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Plant Physiol. 2004 Feb;134(2):575-85</RefSource>
<PMID Version="1">14966247</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Science. 2004 May 14;304(5673):982</RefSource>
<PMID Version="1">15143274</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Genome Res. 2004 Oct;14(10A):1861-9</RefSource>
<PMID Version="1">15466286</PMID>
</CommentsCorrections>
</CommentsCorrectionsList>
<MeshHeadingList><MeshHeading><DescriptorName UI="D032084" MajorTopicYN="Y">Citrus sinensis</DescriptorName>
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<MeshHeading><DescriptorName UI="D010940" MajorTopicYN="Y">Plant Proteins</DescriptorName>
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<MeshHeading><DescriptorName UI="D014157" MajorTopicYN="Y">Transcription Factors</DescriptorName>
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<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
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<affiliations><list><country><li>République populaire de Chine</li>
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<tree><country name="République populaire de Chine"><noRegion><name sortKey="Hou, Xiao Jin" sort="Hou, Xiao Jin" uniqKey="Hou X" first="Xiao-Jin" last="Hou">Xiao-Jin Hou</name>
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<name sortKey="Liu, Sheng Rui" sort="Liu, Sheng Rui" uniqKey="Liu S" first="Sheng-Rui" last="Liu">Sheng-Rui Liu</name>
<name sortKey="Zhang, Jin Zhi" sort="Zhang, Jin Zhi" uniqKey="Zhang J" first="Jin-Zhi" last="Zhang">Jin-Zhi Zhang</name>
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