Long-term boron-deficiency-responsive genes revealed by cDNA-AFLP differ between Citrus sinensis roots and leaves.
Identifieur interne : 000153 ( PubMed/Checkpoint ); précédent : 000152; suivant : 000154Long-term boron-deficiency-responsive genes revealed by cDNA-AFLP differ between Citrus sinensis roots and leaves.
Auteurs : Yi-Bin Lu [République populaire de Chine] ; Yi-Ping Qi [République populaire de Chine] ; Lin-Tong Yang [République populaire de Chine] ; Jinwook Lee [Corée du Sud] ; Peng Guo [République populaire de Chine] ; Xin Ye [République populaire de Chine] ; Meng-Yang Jia [République populaire de Chine] ; Mei-Li Li [République populaire de Chine] ; Li-Song Chen [République populaire de Chine]Source :
- Frontiers in plant science ; 2015.
Abstract
Seedlings of Citrus sinensis (L.) Osbeck were supplied with boron (B)-deficient (without H3BO3) or -sufficient (10 μM H3BO3) nutrient solution for 15 weeks. We identified 54 (38) and 38 (45) up (down)-regulated cDNA-AFLP bands (transcript-derived fragments, TDFs) from B-deficient leaves and roots, respectively. These TDFs were mainly involved in protein and amino acid metabolism, carbohydrate and energy metabolism, nucleic acid metabolism, cell transport, signal transduction, and stress response and defense. The majority of the differentially expressed TDFs were isolated only from B-deficient roots or leaves, only seven TDFs with the same GenBank ID were isolated from the both. In addition, ATP biosynthesis-related TDFs were induced in B-deficient roots, but unaffected in B-deficient leaves. Most of the differentially expressed TDFs associated with signal transduction and stress defense were down-regulated in roots, but up-regulated in leaves. TDFs related to protein ubiquitination and proteolysis were induced in B-deficient leaves except for one TDF, while only two down-regulated TDFs associated with ubiquitination were detected in B-deficient roots. Thus, many differences existed in long-term B-deficiency-responsive genes between roots and leaves. In conclusion, our findings provided a global picture of the differential responses occurring in B-deficient roots and leaves and revealed new insight into the different adaptive mechanisms of C. sinensis roots and leaves to B-deficiency at the transcriptional level.
DOI: 10.3389/fpls.2015.00585
PubMed: 26284101
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Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou, China ; The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, Fujian Agriculture and Forestry University Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou, China ; The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, Fujian Agriculture and Forestry University Fuzhou</wicri:regionArea><wicri:noRegion>Fujian Agriculture and Forestry University Fuzhou</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2015">2015</date><idno type="RBID">pubmed:26284101</idno><idno type="pmid">26284101</idno><idno type="doi">10.3389/fpls.2015.00585</idno><idno type="wicri:Area/PubMed/Corpus">000152</idno><idno type="wicri:Area/PubMed/Curation">000152</idno><idno type="wicri:Area/PubMed/Checkpoint">000152</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Long-term boron-deficiency-responsive genes revealed by cDNA-AFLP differ between Citrus sinensis roots and leaves.</title><author><name sortKey="Lu, Yi Bin" sort="Lu, Yi Bin" uniqKey="Lu Y" first="Yi-Bin" last="Lu">Yi-Bin Lu</name><affiliation wicri:level="1"><nlm:affiliation>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou</wicri:regionArea><wicri:noRegion>Fujian Agriculture and Forestry University Fuzhou</wicri:noRegion></affiliation></author><author><name sortKey="Qi, Yi Ping" sort="Qi, Yi Ping" uniqKey="Qi Y" first="Yi-Ping" last="Qi">Yi-Ping Qi</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Materia Medica, Fujian Academy of Medical Sciences Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Materia Medica, Fujian Academy of Medical Sciences Fuzhou</wicri:regionArea><wicri:noRegion>Fujian Academy of Medical Sciences Fuzhou</wicri:noRegion></affiliation></author><author><name sortKey="Yang, Lin Tong" sort="Yang, Lin Tong" uniqKey="Yang L" first="Lin-Tong" last="Yang">Lin-Tong Yang</name><affiliation wicri:level="1"><nlm:affiliation>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou</wicri:regionArea><wicri:noRegion>Fujian Agriculture and Forestry University Fuzhou</wicri:noRegion></affiliation></author><author><name sortKey="Lee, Jinwook" sort="Lee, Jinwook" uniqKey="Lee J" first="Jinwook" last="Lee">Jinwook Lee</name><affiliation wicri:level="1"><nlm:affiliation>Department of Horticultural Science, Kyungpook National University Daegu, South Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Horticultural Science, Kyungpook National University Daegu</wicri:regionArea><wicri:noRegion>Kyungpook National University Daegu</wicri:noRegion></affiliation></author><author><name sortKey="Guo, Peng" sort="Guo, Peng" uniqKey="Guo P" first="Peng" last="Guo">Peng Guo</name><affiliation wicri:level="1"><nlm:affiliation>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou</wicri:regionArea><wicri:noRegion>Fujian Agriculture and Forestry University Fuzhou</wicri:noRegion></affiliation></author><author><name sortKey="Ye, Xin" sort="Ye, Xin" uniqKey="Ye X" first="Xin" last="Ye">Xin Ye</name><affiliation wicri:level="1"><nlm:affiliation>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou</wicri:regionArea><wicri:noRegion>Fujian Agriculture and Forestry University Fuzhou</wicri:noRegion></affiliation></author><author><name sortKey="Jia, Meng Yang" sort="Jia, Meng Yang" uniqKey="Jia M" first="Meng-Yang" last="Jia">Meng-Yang Jia</name><affiliation wicri:level="1"><nlm:affiliation>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou</wicri:regionArea><wicri:noRegion>Fujian Agriculture and Forestry University Fuzhou</wicri:noRegion></affiliation></author><author><name sortKey="Li, Mei Li" sort="Li, Mei Li" uniqKey="Li M" first="Mei-Li" last="Li">Mei-Li Li</name><affiliation wicri:level="1"><nlm:affiliation>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou</wicri:regionArea><wicri:noRegion>Fujian Agriculture and Forestry University Fuzhou</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Li Song" sort="Chen, Li Song" uniqKey="Chen L" first="Li-Song" last="Chen">Li-Song Chen</name><affiliation wicri:level="1"><nlm:affiliation>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou, China ; The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, Fujian Agriculture and Forestry University Fuzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou, China ; The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, Fujian Agriculture and Forestry University Fuzhou</wicri:regionArea><wicri:noRegion>Fujian Agriculture and Forestry University Fuzhou</wicri:noRegion></affiliation></author></analytic><series><title level="j">Frontiers in plant science</title><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Seedlings of Citrus sinensis (L.) Osbeck were supplied with boron (B)-deficient (without H3BO3) or -sufficient (10 μM H3BO3) nutrient solution for 15 weeks. We identified 54 (38) and 38 (45) up (down)-regulated cDNA-AFLP bands (transcript-derived fragments, TDFs) from B-deficient leaves and roots, respectively. These TDFs were mainly involved in protein and amino acid metabolism, carbohydrate and energy metabolism, nucleic acid metabolism, cell transport, signal transduction, and stress response and defense. The majority of the differentially expressed TDFs were isolated only from B-deficient roots or leaves, only seven TDFs with the same GenBank ID were isolated from the both. In addition, ATP biosynthesis-related TDFs were induced in B-deficient roots, but unaffected in B-deficient leaves. Most of the differentially expressed TDFs associated with signal transduction and stress defense were down-regulated in roots, but up-regulated in leaves. TDFs related to protein ubiquitination and proteolysis were induced in B-deficient leaves except for one TDF, while only two down-regulated TDFs associated with ubiquitination were detected in B-deficient roots. Thus, many differences existed in long-term B-deficiency-responsive genes between roots and leaves. In conclusion, our findings provided a global picture of the differential responses occurring in B-deficient roots and leaves and revealed new insight into the different adaptive mechanisms of C. sinensis roots and leaves to B-deficiency at the transcriptional level.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">26284101</PMID><DateCreated><Year>2015</Year><Month>8</Month><Day>18</Day></DateCreated><DateCompleted><Year>2015</Year><Month>08</Month><Day>18</Day></DateCompleted><DateRevised><Year>2015</Year><Month>8</Month><Day>20</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><JournalIssue CitedMedium="Print"><Volume>6</Volume><PubDate><Year>2015</Year></PubDate></JournalIssue><Title>Frontiers in plant science</Title><ISOAbbreviation>Front Plant Sci</ISOAbbreviation></Journal><ArticleTitle>Long-term boron-deficiency-responsive genes revealed by cDNA-AFLP differ between Citrus sinensis roots and leaves.</ArticleTitle><Pagination><MedlinePgn>585</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fpls.2015.00585</ELocationID><Abstract><AbstractText>Seedlings of Citrus sinensis (L.) Osbeck were supplied with boron (B)-deficient (without H3BO3) or -sufficient (10 μM H3BO3) nutrient solution for 15 weeks. We identified 54 (38) and 38 (45) up (down)-regulated cDNA-AFLP bands (transcript-derived fragments, TDFs) from B-deficient leaves and roots, respectively. These TDFs were mainly involved in protein and amino acid metabolism, carbohydrate and energy metabolism, nucleic acid metabolism, cell transport, signal transduction, and stress response and defense. The majority of the differentially expressed TDFs were isolated only from B-deficient roots or leaves, only seven TDFs with the same GenBank ID were isolated from the both. In addition, ATP biosynthesis-related TDFs were induced in B-deficient roots, but unaffected in B-deficient leaves. Most of the differentially expressed TDFs associated with signal transduction and stress defense were down-regulated in roots, but up-regulated in leaves. TDFs related to protein ubiquitination and proteolysis were induced in B-deficient leaves except for one TDF, while only two down-regulated TDFs associated with ubiquitination were detected in B-deficient roots. Thus, many differences existed in long-term B-deficiency-responsive genes between roots and leaves. In conclusion, our findings provided a global picture of the differential responses occurring in B-deficient roots and leaves and revealed new insight into the different adaptive mechanisms of C. sinensis roots and leaves to B-deficiency at the transcriptional level.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lu</LastName><ForeName>Yi-Bin</ForeName><Initials>YB</Initials><AffiliationInfo><Affiliation>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Qi</LastName><ForeName>Yi-Ping</ForeName><Initials>YP</Initials><AffiliationInfo><Affiliation>Institute of Materia Medica, Fujian Academy of Medical Sciences Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Lin-Tong</ForeName><Initials>LT</Initials><AffiliationInfo><Affiliation>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lee</LastName><ForeName>Jinwook</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Horticultural Science, Kyungpook National University Daegu, South Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guo</LastName><ForeName>Peng</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ye</LastName><ForeName>Xin</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jia</LastName><ForeName>Meng-Yang</ForeName><Initials>MY</Initials><AffiliationInfo><Affiliation>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Mei-Li</ForeName><Initials>ML</Initials><AffiliationInfo><Affiliation>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Li-Song</ForeName><Initials>LS</Initials><AffiliationInfo><Affiliation>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou, China ; The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, Fujian Agriculture and Forestry University Fuzhou, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>ENG</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>Jul</Month><Day>28</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Plant Sci</MedlineTA><NlmUniqueID>101568200</NlmUniqueID><ISSNLinking>1664-462X</ISSNLinking></MedlineJournalInfo><OtherID Source="NLM">PMC4517394</OtherID><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Citrus sinensis</Keyword><Keyword MajorTopicYN="N">boron-deficiency</Keyword><Keyword MajorTopicYN="N">cDNA-AFLP</Keyword><Keyword MajorTopicYN="N">leaves</Keyword><Keyword MajorTopicYN="N">roots</Keyword><Keyword MajorTopicYN="N">transcript-derived fragment</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>4</Month><Day>13</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>7</Month><Day>13</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>8</Month><Day>19</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>8</Month><Day>19</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2015</Year><Month>8</Month><Day>19</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">26284101</ArticleId><ArticleId IdType="doi">10.3389/fpls.2015.00585</ArticleId><ArticleId IdType="pmc">PMC4517394</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Corée du Sud</li><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Lu, Yi Bin" sort="Lu, Yi Bin" uniqKey="Lu Y" first="Yi-Bin" last="Lu">Yi-Bin Lu</name></noRegion><name sortKey="Chen, Li Song" sort="Chen, Li Song" uniqKey="Chen L" first="Li-Song" last="Chen">Li-Song Chen</name><name sortKey="Guo, Peng" sort="Guo, Peng" uniqKey="Guo P" first="Peng" last="Guo">Peng Guo</name><name sortKey="Jia, Meng Yang" sort="Jia, Meng Yang" uniqKey="Jia M" first="Meng-Yang" last="Jia">Meng-Yang Jia</name><name sortKey="Li, Mei Li" sort="Li, Mei Li" uniqKey="Li M" first="Mei-Li" last="Li">Mei-Li Li</name><name sortKey="Qi, Yi Ping" sort="Qi, Yi Ping" uniqKey="Qi Y" first="Yi-Ping" last="Qi">Yi-Ping Qi</name><name sortKey="Yang, Lin Tong" sort="Yang, Lin Tong" uniqKey="Yang L" first="Lin-Tong" last="Yang">Lin-Tong Yang</name><name sortKey="Ye, Xin" sort="Ye, Xin" uniqKey="Ye X" first="Xin" last="Ye">Xin Ye</name></country><country name="Corée du Sud"><noRegion><name sortKey="Lee, Jinwook" sort="Lee, Jinwook" uniqKey="Lee J" first="Jinwook" last="Lee">Jinwook Lee</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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