Complete Chloroplast Genome Sequences of Mongolia Medicine Artemisia frigida and Phylogenetic Relationships with Other Plants
Identifieur interne : 001133 ( Pmc/Curation ); précédent : 001132; suivant : 001134Complete Chloroplast Genome Sequences of Mongolia Medicine Artemisia frigida and Phylogenetic Relationships with Other Plants
Auteurs : Yue Liu [République populaire de Chine, États-Unis] ; Naxin Huo [États-Unis] ; Lingli Dong [États-Unis] ; Yi Wang [États-Unis] ; Shuixian Zhang [République populaire de Chine] ; Hugh A. Young [États-Unis] ; Xiaoxiao Feng [République populaire de Chine] ; Yong Qiang Gu [États-Unis]Source :
- PLoS ONE [ 1932-6203 ] ; 2013.
Abstract
The complete chloroplast genome of
The chloroplast genome sequence of
Url:
DOI: 10.1371/journal.pone.0057533
PubMed: 23460871
PubMed Central: 3583863
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: Pour aller vers cette notice dans l'étape Curation :001134
Links to Exploration step
PMC:3583863Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Complete Chloroplast Genome Sequences of Mongolia Medicine <italic>Artemisia frigida</italic> and Phylogenetic Relationships with Other Plants</title><author><name sortKey="Liu, Yue" sort="Liu, Yue" uniqKey="Liu Y" first="Yue" last="Liu">Yue Liu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>College of Life and Environmental Sciences, Minzu University of China, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Life and Environmental Sciences, Minzu University of China, Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Institute of Chinese Materia Medica, China Academy of Traditional Chinese Medicine, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Chinese Materia Medica, China Academy of Traditional Chinese Medicine, Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Department of Plant Science, University of California Davis, Davis, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Science, University of California Davis, Davis, California</wicri:regionArea></affiliation></author><author><name sortKey="Huo, Naxin" sort="Huo, Naxin" uniqKey="Huo N" first="Naxin" last="Huo">Naxin Huo</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California</wicri:regionArea></affiliation></author><author><name sortKey="Dong, Lingli" sort="Dong, Lingli" uniqKey="Dong L" first="Lingli" last="Dong">Lingli Dong</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California</wicri:regionArea></affiliation></author><author><name sortKey="Wang, Yi" sort="Wang, Yi" uniqKey="Wang Y" first="Yi" last="Wang">Yi Wang</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Shuixian" sort="Zhang, Shuixian" uniqKey="Zhang S" first="Shuixian" last="Zhang">Shuixian Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>College of Life and Environmental Sciences, Minzu University of China, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Life and Environmental Sciences, Minzu University of China, Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff5"><addr-line>Graduate School, Minzu University of China, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Graduate School, Minzu University of China, Beijing</wicri:regionArea></affiliation></author><author><name sortKey="Young, Hugh A" sort="Young, Hugh A" uniqKey="Young H" first="Hugh A." last="Young">Hugh A. Young</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California</wicri:regionArea></affiliation></author><author><name sortKey="Feng, Xiaoxiao" sort="Feng, Xiaoxiao" uniqKey="Feng X" first="Xiaoxiao" last="Feng">Xiaoxiao Feng</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>College of Life and Environmental Sciences, Minzu University of China, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Life and Environmental Sciences, Minzu University of China, Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff5"><addr-line>Graduate School, Minzu University of China, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Graduate School, Minzu University of China, Beijing</wicri:regionArea></affiliation></author><author><name sortKey="Gu, Yong Qiang" sort="Gu, Yong Qiang" uniqKey="Gu Y" first="Yong Qiang" last="Gu">Yong Qiang Gu</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">23460871</idno><idno type="pmc">3583863</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3583863</idno><idno type="RBID">PMC:3583863</idno><idno type="doi">10.1371/journal.pone.0057533</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">001134</idno><idno type="wicri:Area/Pmc/Curation">001133</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Complete Chloroplast Genome Sequences of Mongolia Medicine <italic>Artemisia frigida</italic> and Phylogenetic Relationships with Other Plants</title><author><name sortKey="Liu, Yue" sort="Liu, Yue" uniqKey="Liu Y" first="Yue" last="Liu">Yue Liu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>College of Life and Environmental Sciences, Minzu University of China, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Life and Environmental Sciences, Minzu University of China, Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Institute of Chinese Materia Medica, China Academy of Traditional Chinese Medicine, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Chinese Materia Medica, China Academy of Traditional Chinese Medicine, Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Department of Plant Science, University of California Davis, Davis, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Science, University of California Davis, Davis, California</wicri:regionArea></affiliation></author><author><name sortKey="Huo, Naxin" sort="Huo, Naxin" uniqKey="Huo N" first="Naxin" last="Huo">Naxin Huo</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California</wicri:regionArea></affiliation></author><author><name sortKey="Dong, Lingli" sort="Dong, Lingli" uniqKey="Dong L" first="Lingli" last="Dong">Lingli Dong</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California</wicri:regionArea></affiliation></author><author><name sortKey="Wang, Yi" sort="Wang, Yi" uniqKey="Wang Y" first="Yi" last="Wang">Yi Wang</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Shuixian" sort="Zhang, Shuixian" uniqKey="Zhang S" first="Shuixian" last="Zhang">Shuixian Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>College of Life and Environmental Sciences, Minzu University of China, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Life and Environmental Sciences, Minzu University of China, Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff5"><addr-line>Graduate School, Minzu University of China, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Graduate School, Minzu University of China, Beijing</wicri:regionArea></affiliation></author><author><name sortKey="Young, Hugh A" sort="Young, Hugh A" uniqKey="Young H" first="Hugh A." last="Young">Hugh A. Young</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California</wicri:regionArea></affiliation></author><author><name sortKey="Feng, Xiaoxiao" sort="Feng, Xiaoxiao" uniqKey="Feng X" first="Xiaoxiao" last="Feng">Xiaoxiao Feng</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>College of Life and Environmental Sciences, Minzu University of China, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Life and Environmental Sciences, Minzu University of China, Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff5"><addr-line>Graduate School, Minzu University of China, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Graduate School, Minzu University of China, Beijing</wicri:regionArea></affiliation></author><author><name sortKey="Gu, Yong Qiang" sort="Gu, Yong Qiang" uniqKey="Gu Y" first="Yong Qiang" last="Gu">Yong Qiang Gu</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California</wicri:regionArea></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p><italic>Artemisia frigida</italic> Willd. is an important Mongolian traditional medicinal plant with pharmacological functions of stanch and detumescence. However, there is little sequence and genomic information available for <italic>Artemisia frigida</italic>, which makes phylogenetic identification, evolutionary studies, and genetic improvement of its value very difficult. We report the complete chloroplast genome sequence of <italic>Artemisia frigida</italic> based on 454 pyrosequencing.</p></sec><sec><title>Methodology/Principal Findings</title><p>The complete chloroplast genome of <italic>Artemisia frigida</italic> is 151,076 bp including a large single copy (LSC) region of 82,740 bp, a small single copy (SSC) region of 18,394 bp and a pair of inverted repeats (IRs) of 24,971 bp. The genome contains 114 unique genes and 18 duplicated genes. The chloroplast genome of <italic>Artemisia frigida</italic> contains a small 3.4 kb inversion within a large 23 kb inversion in the LSC region, a unique feature in Asteraceae. The gene order in the SSC region of <italic>Artemisia frigida</italic> is inverted compared with the other 6 Asteraceae species with the chloroplast genomes sequenced. This inversion is likely caused by an intramolecular recombination event only occurred in <italic>Artemisia frigida</italic>. The existence of rich SSR loci in the <italic>Artemisia frigida</italic> chloroplast genome provides a rare opportunity to study population genetics of this Mongolian medicinal plant. Phylogenetic analysis demonstrates a sister relationship between <italic>Artemisia frigida</italic> and four other species in Asteraceae, including <italic>Ageratina adenophora, Helianthus annuus, Guizotia abyssinica</italic> and <italic>Lactuca sativa,</italic> based on 61 protein-coding sequences. Furthermore, <italic>Artemisia frigida</italic> was placed in the tribe Anthemideae in the subfamily Asteroideae (Asteraceae) based on <italic>ndhF</italic> and <italic>trnL-F</italic> sequence comparisons.</p></sec><sec><title>Conclusion</title><p>The chloroplast genome sequence of <italic>Artemisia frigida</italic> was assembled and analyzed in this study, representing the first plastid genome sequenced in the Anthemideae tribe. This complete chloroplast genome sequence will be useful for molecular ecology and molecular phylogeny studies within <italic>Artemisia</italic> species and also within the Asteraceae family.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Liu, Y" uniqKey="Liu Y">Y Liu</name></author><author><name sortKey="Liu, J" uniqKey="Liu J">J Liu</name></author><author><name sortKey="Tang, L" uniqKey="Tang L">L Tang</name></author><author><name sortKey="Zhang, W" uniqKey="Zhang W">W Zhang</name></author><author><name sortKey="Zhang, L" uniqKey="Zhang L">L Zhang</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Garcia, S" uniqKey="Garcia S">S Garcia</name></author><author><name sortKey="Sanz, M" uniqKey="Sanz M">M Sanz</name></author><author><name sortKey="Garnatje, T" uniqKey="Garnatje T">T Garnatje</name></author><author><name sortKey="Kreitschitz, A" uniqKey="Kreitschitz A">A Kreitschitz</name></author><author><name sortKey="Mcarthur, Ed" uniqKey="Mcarthur E">ED McArthur</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wan, T" uniqKey="Wan T">T Wan</name></author><author><name sortKey="Sun, Q" uniqKey="Sun Q">Q Sun</name></author><author><name sortKey="Cai, P" uniqKey="Cai P">P Cai</name></author><author><name sortKey="Meng, X" uniqKey="Meng X">X Meng</name></author><author><name sortKey="Yi, W" uniqKey="Yi W">W Yi</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Zhang, W" uniqKey="Zhang W">W Zhang</name></author><author><name sortKey="Tang, L" uniqKey="Tang L">L Tang</name></author><author><name sortKey="Xie, K" uniqKey="Xie K">K Xie</name></author><author><name sortKey="Cui, J" uniqKey="Cui J">J Cui</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cui, J" uniqKey="Cui J">J Cui</name></author><author><name sortKey="Tang, L" uniqKey="Tang L">L Tang</name></author><author><name sortKey="Lan, R" uniqKey="Lan R">R Lan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Piao, Xl" uniqKey="Piao X">XL Piao</name></author><author><name sortKey="Xie, K" uniqKey="Xie K">K Xie</name></author><author><name sortKey="Cui, J" uniqKey="Cui J">J Cui</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wang, Qh" uniqKey="Wang Q">QH Wang</name></author><author><name sortKey="Ao, Wl" uniqKey="Ao W">WL Ao</name></author><author><name sortKey="Wang, Xl" uniqKey="Wang X">XL Wang</name></author><author><name sortKey="Bao, Xh" uniqKey="Bao X">XH Bao</name></author><author><name sortKey="Wang, Jh" uniqKey="Wang J">JH Wang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Taberlet, P" uniqKey="Taberlet P">P Taberlet</name></author><author><name sortKey="Gielly, L" uniqKey="Gielly L">L Gielly</name></author><author><name sortKey="Pautou, G" uniqKey="Pautou G">G Pautou</name></author><author><name sortKey="Bouvet, J" uniqKey="Bouvet J">J Bouvet</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tkach, Nv" uniqKey="Tkach N">NV Tkach</name></author><author><name sortKey="Hoffmann, Mh" uniqKey="Hoffmann M">MH Hoffmann</name></author><author><name sortKey="Roser, M" uniqKey="Roser M">M Roser</name></author><author><name sortKey="Korobkov, Aa" uniqKey="Korobkov A">AA Korobkov</name></author><author><name sortKey="Von Hagen, Kb" uniqKey="Von Hagen K">KB von Hagen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Soininen, Em" uniqKey="Soininen E">EM Soininen</name></author><author><name sortKey="Valentini, A" uniqKey="Valentini A">A Valentini</name></author><author><name sortKey="Coissac, E" uniqKey="Coissac E">E Coissac</name></author><author><name sortKey="Miquel, C" uniqKey="Miquel C">C Miquel</name></author><author><name sortKey="Gielly, L" uniqKey="Gielly L">L Gielly</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Garcia, S" uniqKey="Garcia S">S Garcia</name></author><author><name sortKey="Mcarthur, Ed" uniqKey="Mcarthur E">ED McArthur</name></author><author><name sortKey="Pellicer, J" uniqKey="Pellicer J">J Pellicer</name></author><author><name sortKey="Sanderson, Sc" uniqKey="Sanderson S">SC Sanderson</name></author><author><name sortKey="Valles, J" uniqKey="Valles J">J Valles</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hiiesalu, I" uniqKey="Hiiesalu I">I Hiiesalu</name></author><author><name sortKey="Opik, M" uniqKey="Opik M">M Opik</name></author><author><name sortKey="Metsis, M" uniqKey="Metsis M">M Metsis</name></author><author><name sortKey="Lilje, L" uniqKey="Lilje L">L Lilje</name></author><author><name sortKey="Davison, J" uniqKey="Davison J">J Davison</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Frank, Da" uniqKey="Frank D">DA Frank</name></author><author><name sortKey="Pontes, Aw" uniqKey="Pontes A">AW Pontes</name></author><author><name sortKey="Maine, Em" uniqKey="Maine E">EM Maine</name></author><author><name sortKey="Caruana, J" uniqKey="Caruana J">J Caruana</name></author><author><name sortKey="Raina, R" uniqKey="Raina R">R Raina</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Riggins, Cw" uniqKey="Riggins C">CW Riggins</name></author><author><name sortKey="Seigler, Ds" uniqKey="Seigler D">DS Seigler</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Chumley, Tw" uniqKey="Chumley T">TW Chumley</name></author><author><name sortKey="Palmer, Jd" uniqKey="Palmer J">JD Palmer</name></author><author><name sortKey="Mower, Jp" uniqKey="Mower J">JP Mower</name></author><author><name sortKey="Fourcade, Hm" uniqKey="Fourcade H">HM Fourcade</name></author><author><name sortKey="Calie, Pj" uniqKey="Calie P">PJ Calie</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jansen, Rk" uniqKey="Jansen R">RK Jansen</name></author><author><name sortKey="Palmer, Jd" uniqKey="Palmer J">JD Palmer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Doyle, Jj" uniqKey="Doyle J">JJ Doyle</name></author><author><name sortKey="Doyle, Jl" uniqKey="Doyle J">JL Doyle</name></author><author><name sortKey="Ballenger, Ja" uniqKey="Ballenger J">JA Ballenger</name></author><author><name sortKey="Palmer, Jd" uniqKey="Palmer J">JD Palmer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Doyle, Jj" uniqKey="Doyle J">JJ Doyle</name></author><author><name sortKey="Davis, Ji" uniqKey="Davis J">JI Davis</name></author><author><name sortKey="Soreng, Rj" uniqKey="Soreng R">RJ Soreng</name></author><author><name sortKey="Garvin, D" uniqKey="Garvin D">D Garvin</name></author><author><name sortKey="Anderson, Mj" uniqKey="Anderson M">MJ Anderson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Shinozaki, K" uniqKey="Shinozaki K">K Shinozaki</name></author><author><name sortKey="Ohme, M" uniqKey="Ohme M">M Ohme</name></author><author><name sortKey="Tanaka, M" uniqKey="Tanaka M">M Tanaka</name></author><author><name sortKey="Wakasugi, T" uniqKey="Wakasugi T">T Wakasugi</name></author><author><name sortKey="Hayashida, N" uniqKey="Hayashida N">N Hayashida</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="De Cosa, B" uniqKey="De Cosa B">B De Cosa</name></author><author><name sortKey="Moar, W" uniqKey="Moar W">W Moar</name></author><author><name sortKey="Lee, Sb" uniqKey="Lee S">SB Lee</name></author><author><name sortKey="Miller, M" uniqKey="Miller M">M Miller</name></author><author><name sortKey="Daniell, H" uniqKey="Daniell H">H Daniell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ruiz, On" uniqKey="Ruiz O">ON Ruiz</name></author><author><name sortKey="Hussein, Hs" uniqKey="Hussein H">HS Hussein</name></author><author><name sortKey="Terry, N" uniqKey="Terry N">N Terry</name></author><author><name sortKey="Daniell, H" uniqKey="Daniell H">H Daniell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Quesada Vargas, T" uniqKey="Quesada Vargas T">T Quesada-Vargas</name></author><author><name sortKey="Ruiz, On" uniqKey="Ruiz O">ON Ruiz</name></author><author><name sortKey="Daniell, H" uniqKey="Daniell H">H Daniell</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Dufourmantel, N" uniqKey="Dufourmantel N">N Dufourmantel</name></author><author><name sortKey="Pelissier, B" uniqKey="Pelissier B">B Pelissier</name></author><author><name sortKey="Garcon, F" uniqKey="Garcon F">F Garcon</name></author><author><name sortKey="Peltier, G" uniqKey="Peltier G">G Peltier</name></author><author><name sortKey="Ferullo, Jm" uniqKey="Ferullo J">JM Ferullo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kumar, S" uniqKey="Kumar S">S Kumar</name></author><author><name sortKey="Dhingra, A" uniqKey="Dhingra A">A Dhingra</name></author><author><name sortKey="Daniell, H" uniqKey="Daniell H">H Daniell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kumar, S" uniqKey="Kumar S">S Kumar</name></author><author><name sortKey="Dhingra, A" uniqKey="Dhingra A">A Dhingra</name></author><author><name sortKey="Daniell, H" uniqKey="Daniell H">H Daniell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tangphatsornruang, S" uniqKey="Tangphatsornruang S">S Tangphatsornruang</name></author><author><name sortKey="Sangsrakru, D" uniqKey="Sangsrakru D">D Sangsrakru</name></author><author><name sortKey="Chanprasert, J" uniqKey="Chanprasert J">J Chanprasert</name></author><author><name sortKey="Uthaipaisanwong, P" uniqKey="Uthaipaisanwong P">P Uthaipaisanwong</name></author><author><name sortKey="Yoocha, T" uniqKey="Yoocha T">T Yoocha</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Moore, Mj" uniqKey="Moore M">MJ Moore</name></author><author><name sortKey="Dhingra, A" uniqKey="Dhingra A">A Dhingra</name></author><author><name sortKey="Soltis, Ps" uniqKey="Soltis P">PS Soltis</name></author><author><name sortKey="Shaw, R" uniqKey="Shaw R">R Shaw</name></author><author><name sortKey="Farmerie, Wg" uniqKey="Farmerie W">WG Farmerie</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yang, M" uniqKey="Yang M">M Yang</name></author><author><name sortKey="Zhang, X" uniqKey="Zhang X">X Zhang</name></author><author><name sortKey="Liu, G" uniqKey="Liu G">G Liu</name></author><author><name sortKey="Yin, Y" uniqKey="Yin Y">Y Yin</name></author><author><name sortKey="Chen, K" uniqKey="Chen K">K Chen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cronn, R" uniqKey="Cronn R">R Cronn</name></author><author><name sortKey="Liston, A" uniqKey="Liston A">A Liston</name></author><author><name sortKey="Parks, M" uniqKey="Parks M">M Parks</name></author><author><name sortKey="Gernandt, Ds" uniqKey="Gernandt D">DS Gernandt</name></author><author><name sortKey="Shen, R" uniqKey="Shen R">R Shen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Margulies, M" uniqKey="Margulies M">M Margulies</name></author><author><name sortKey="Egholm, M" uniqKey="Egholm M">M Egholm</name></author><author><name sortKey="Altman, We" uniqKey="Altman W">WE Altman</name></author><author><name sortKey="Attiya, S" uniqKey="Attiya S">S Attiya</name></author><author><name sortKey="Bader, Js" uniqKey="Bader J">JS Bader</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gordon, D" uniqKey="Gordon D">D Gordon</name></author><author><name sortKey="Abajian, C" uniqKey="Abajian C">C Abajian</name></author><author><name sortKey="Green, P" uniqKey="Green P">P Green</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wyman, Sk" uniqKey="Wyman S">SK Wyman</name></author><author><name sortKey="Jansen, Rk" uniqKey="Jansen R">RK Jansen</name></author><author><name sortKey="Boore, Jl" uniqKey="Boore J">JL Boore</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Altschul, Sf" uniqKey="Altschul S">SF Altschul</name></author><author><name sortKey="Gish, W" uniqKey="Gish W">W Gish</name></author><author><name sortKey="Miller, W" uniqKey="Miller W">W Miller</name></author><author><name sortKey="Myers, Ew" uniqKey="Myers E">EW Myers</name></author><author><name sortKey="Lipman, Dj" uniqKey="Lipman D">DJ Lipman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Timme, Re" uniqKey="Timme R">RE Timme</name></author><author><name sortKey="Kuehl, Jv" uniqKey="Kuehl J">JV Kuehl</name></author><author><name sortKey="Boore, Jl" uniqKey="Boore J">JL Boore</name></author><author><name sortKey="Jansen, Rk" uniqKey="Jansen R">RK Jansen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Dempewolf, H" uniqKey="Dempewolf H">H Dempewolf</name></author><author><name sortKey="Kane, Nc" uniqKey="Kane N">NC Kane</name></author><author><name sortKey="Ostevik, Kl" uniqKey="Ostevik K">KL Ostevik</name></author><author><name sortKey="Geleta, M" uniqKey="Geleta M">M Geleta</name></author><author><name sortKey="Barker, Ms" uniqKey="Barker M">MS Barker</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kumar, S" uniqKey="Kumar S">S Kumar</name></author><author><name sortKey="Hahn, Fm" uniqKey="Hahn F">FM Hahn</name></author><author><name sortKey="Mcmahan, Cm" uniqKey="Mcmahan C">CM McMahan</name></author><author><name sortKey="Cornish, K" uniqKey="Cornish K">K Cornish</name></author><author><name sortKey="Whalen, Mc" uniqKey="Whalen M">MC Whalen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nie, X" uniqKey="Nie X">X Nie</name></author><author><name sortKey="Lv, S" uniqKey="Lv S">S Lv</name></author><author><name sortKey="Zhang, Y" uniqKey="Zhang Y">Y Zhang</name></author><author><name sortKey="Du, X" uniqKey="Du X">X Du</name></author><author><name sortKey="Wang, L" uniqKey="Wang L">L Wang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Doorduin, L" uniqKey="Doorduin L">L Doorduin</name></author><author><name sortKey="Gravendeel, B" uniqKey="Gravendeel B">B Gravendeel</name></author><author><name sortKey="Lammers, Y" uniqKey="Lammers Y">Y Lammers</name></author><author><name sortKey="Ariyurek, Y" uniqKey="Ariyurek Y">Y Ariyurek</name></author><author><name sortKey="Chin, Awt" uniqKey="Chin A">AWT Chin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Frazer, Ka" uniqKey="Frazer K">KA Frazer</name></author><author><name sortKey="Pachter, L" uniqKey="Pachter L">L Pachter</name></author><author><name sortKey="Poliakov, A" uniqKey="Poliakov A">A Poliakov</name></author><author><name sortKey="Rubin, Em" uniqKey="Rubin E">EM Rubin</name></author><author><name sortKey="Dubchak, I" uniqKey="Dubchak I">I Dubchak</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cai, Z" uniqKey="Cai Z">Z Cai</name></author><author><name sortKey="Penaflor, C" uniqKey="Penaflor C">C Penaflor</name></author><author><name sortKey="Kuehl, Jv" uniqKey="Kuehl J">JV Kuehl</name></author><author><name sortKey="Leebens Mack, J" uniqKey="Leebens Mack J">J Leebens-Mack</name></author><author><name sortKey="Carlson, Je" uniqKey="Carlson J">JE Carlson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hansen, Dr" uniqKey="Hansen D">DR Hansen</name></author><author><name sortKey="Dastidar, Sg" uniqKey="Dastidar S">SG Dastidar</name></author><author><name sortKey="Cai, Z" uniqKey="Cai Z">Z Cai</name></author><author><name sortKey="Penaflor, C" uniqKey="Penaflor C">C Penaflor</name></author><author><name sortKey="Kuehl, Jv" uniqKey="Kuehl J">JV Kuehl</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kurtz, S" uniqKey="Kurtz S">S Kurtz</name></author><author><name sortKey="Schleiermacher, C" uniqKey="Schleiermacher C">C Schleiermacher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Thiel, T" uniqKey="Thiel T">T Thiel</name></author><author><name sortKey="Michalek, W" uniqKey="Michalek W">W Michalek</name></author><author><name sortKey="Varshney, Rk" uniqKey="Varshney R">RK Varshney</name></author><author><name sortKey="Graner, A" uniqKey="Graner A">A Graner</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Saski, C" uniqKey="Saski C">C Saski</name></author><author><name sortKey="Lee, Sb" uniqKey="Lee S">SB Lee</name></author><author><name sortKey="Fjellheim, S" uniqKey="Fjellheim S">S Fjellheim</name></author><author><name sortKey="Guda, C" uniqKey="Guda C">C Guda</name></author><author><name sortKey="Jansen, Rk" uniqKey="Jansen R">RK Jansen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Goremykin, Vv" uniqKey="Goremykin V">VV Goremykin</name></author><author><name sortKey="Hirsch Ernst, Ki" uniqKey="Hirsch Ernst K">KI Hirsch-Ernst</name></author><author><name sortKey="Wolfl, S" uniqKey="Wolfl S">S Wolfl</name></author><author><name sortKey="Hellwig, Fh" uniqKey="Hellwig F">FH Hellwig</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jansen, Rk" uniqKey="Jansen R">RK Jansen</name></author><author><name sortKey="Kaittanis, C" uniqKey="Kaittanis C">C Kaittanis</name></author><author><name sortKey="Saski, C" uniqKey="Saski C">C Saski</name></author><author><name sortKey="Lee, Sb" uniqKey="Lee S">SB Lee</name></author><author><name sortKey="Tomkins, J" uniqKey="Tomkins J">J Tomkins</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tamura, K" uniqKey="Tamura K">K Tamura</name></author><author><name sortKey="Peterson, D" uniqKey="Peterson D">D Peterson</name></author><author><name sortKey="Peterson, N" uniqKey="Peterson N">N Peterson</name></author><author><name sortKey="Stecher, G" uniqKey="Stecher G">G Stecher</name></author><author><name sortKey="Nei, M" uniqKey="Nei M">M Nei</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Young, Ha" uniqKey="Young H">HA Young</name></author><author><name sortKey="Lanzatella, Cl" uniqKey="Lanzatella C">CL Lanzatella</name></author><author><name sortKey="Sarath, G" uniqKey="Sarath G">G Sarath</name></author><author><name sortKey="Tobias, Cm" uniqKey="Tobias C">CM Tobias</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Panero, Jl" uniqKey="Panero J">JL Panero</name></author><author><name sortKey="Funk, Va" uniqKey="Funk V">VA Funk</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Edgar, Rc" uniqKey="Edgar R">RC Edgar</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wang, W" uniqKey="Wang W">W Wang</name></author><author><name sortKey="Messing, J" uniqKey="Messing J">J Messing</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nock, Cj" uniqKey="Nock C">CJ Nock</name></author><author><name sortKey="Waters, Dl" uniqKey="Waters D">DL Waters</name></author><author><name sortKey="Edwards, Ma" uniqKey="Edwards M">MA Edwards</name></author><author><name sortKey="Bowen, Sg" uniqKey="Bowen S">SG Bowen</name></author><author><name sortKey="Rice, N" uniqKey="Rice N">N Rice</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhang, T" uniqKey="Zhang T">T Zhang</name></author><author><name sortKey="Zhang, X" uniqKey="Zhang X">X Zhang</name></author><author><name sortKey="Hu, S" uniqKey="Hu S">S Hu</name></author><author><name sortKey="Yu, J" uniqKey="Yu J">J Yu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Neckermann, K" uniqKey="Neckermann K">K Neckermann</name></author><author><name sortKey="Zeltz, P" uniqKey="Zeltz P">P Zeltz</name></author><author><name sortKey="Igloi, Gl" uniqKey="Igloi G">GL Igloi</name></author><author><name sortKey="Kossel, H" uniqKey="Kossel H">H Kossel</name></author><author><name sortKey="Maier, Rm" uniqKey="Maier R">RM Maier</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kim, Kj" uniqKey="Kim K">KJ Kim</name></author><author><name sortKey="Jansen, Rk" uniqKey="Jansen R">RK Jansen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kim, Kj" uniqKey="Kim K">KJ Kim</name></author><author><name sortKey="Choi, Ks" uniqKey="Choi K">KS Choi</name></author><author><name sortKey="Jansen, Rk" uniqKey="Jansen R">RK Jansen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Raubeson, La" uniqKey="Raubeson L">LA Raubeson</name></author><author><name sortKey="Jansen, Rk" uniqKey="Jansen R">RK Jansen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tangphatsornruang, S" uniqKey="Tangphatsornruang S">S Tangphatsornruang</name></author><author><name sortKey="Uthaipaisanwong, P" uniqKey="Uthaipaisanwong P">P Uthaipaisanwong</name></author><author><name sortKey="Sangsrakru, D" uniqKey="Sangsrakru D">D Sangsrakru</name></author><author><name sortKey="Chanprasert, J" uniqKey="Chanprasert J">J Chanprasert</name></author><author><name sortKey="Yoocha, T" uniqKey="Yoocha T">T Yoocha</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Palmer, Jd" uniqKey="Palmer J">JD Palmer</name></author><author><name sortKey="Nugent, Jm" uniqKey="Nugent J">JM Nugent</name></author><author><name sortKey="Herbon, La" uniqKey="Herbon L">LA Herbon</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ogihara, Y" uniqKey="Ogihara Y">Y Ogihara</name></author><author><name sortKey="Terachi, T" uniqKey="Terachi T">T Terachi</name></author><author><name sortKey="Sasakuma, T" uniqKey="Sasakuma T">T Sasakuma</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hiratsuka, J" uniqKey="Hiratsuka J">J Hiratsuka</name></author><author><name sortKey="Shimada, H" uniqKey="Shimada H">H Shimada</name></author><author><name sortKey="Whittier, R" uniqKey="Whittier R">R Whittier</name></author><author><name sortKey="Ishibashi, T" uniqKey="Ishibashi T">T Ishibashi</name></author><author><name sortKey="Sakamoto, M" uniqKey="Sakamoto M">M Sakamoto</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Provan, J" uniqKey="Provan J">J Provan</name></author><author><name sortKey="Powell, W" uniqKey="Powell W">W Powell</name></author><author><name sortKey="Hollingsworth, Pm" uniqKey="Hollingsworth P">PM Hollingsworth</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jakobsson, M" uniqKey="Jakobsson M">M Jakobsson</name></author><author><name sortKey="Sall, T" uniqKey="Sall T">T Sall</name></author><author><name sortKey="Lind Hallden, C" uniqKey="Lind Hallden C">C Lind-Hallden</name></author><author><name sortKey="Hallden, C" uniqKey="Hallden C">C Hallden</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ebert, D" uniqKey="Ebert D">D Ebert</name></author><author><name sortKey="Peakall, R" uniqKey="Peakall R">R Peakall</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Provan, J" uniqKey="Provan J">J Provan</name></author><author><name sortKey="Corbett, G" uniqKey="Corbett G">G Corbett</name></author><author><name sortKey="Waugh, R" uniqKey="Waugh R">R Waugh</name></author><author><name sortKey="Mcnicol, Jw" uniqKey="Mcnicol J">JW McNicol</name></author><author><name sortKey="Morgante, M" uniqKey="Morgante M">M Morgante</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Provan, J" uniqKey="Provan J">J Provan</name></author><author><name sortKey="Russell, Jr" uniqKey="Russell J">JR Russell</name></author><author><name sortKey="Booth, A" uniqKey="Booth A">A Booth</name></author><author><name sortKey="Powell, W" uniqKey="Powell W">W Powell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Provan, J" uniqKey="Provan J">J Provan</name></author><author><name sortKey="Corbett, G" uniqKey="Corbett G">G Corbett</name></author><author><name sortKey="Mcnicol, Jw" uniqKey="Mcnicol J">JW McNicol</name></author><author><name sortKey="Powell, W" uniqKey="Powell W">W Powell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bryan, Gj" uniqKey="Bryan G">GJ Bryan</name></author><author><name sortKey="Mcnicol, Jw" uniqKey="Mcnicol J">JW McNicol</name></author><author><name sortKey="Meyer, Rc" uniqKey="Meyer R">RC Meyer</name></author><author><name sortKey="Ramsay, G" uniqKey="Ramsay G">G Ramsay</name></author><author><name sortKey="De Jong, Ws" uniqKey="De Jong W">WS De Jong</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Flannery, Ml" uniqKey="Flannery M">ML Flannery</name></author><author><name sortKey="Mitchell, Fj" uniqKey="Mitchell F">FJ Mitchell</name></author><author><name sortKey="Coyne, S" uniqKey="Coyne S">S Coyne</name></author><author><name sortKey="Kavanagh, Ta" uniqKey="Kavanagh T">TA Kavanagh</name></author><author><name sortKey="Burke, Ji" uniqKey="Burke J">JI Burke</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Provan, J" uniqKey="Provan J">J Provan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Denda, T" uniqKey="Denda T">T Denda</name></author><author><name sortKey="Watanabe, K" uniqKey="Watanabe K">K Watanabe</name></author><author><name sortKey="Kosuge, K" uniqKey="Kosuge K">K Kosuge</name></author><author><name sortKey="Yahara, T" uniqKey="Yahara T">T Yahara</name></author><author><name sortKey="Ito, M" uniqKey="Ito M">M Ito</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fernandez, Ia" uniqKey="Fernandez I">IA Fernandez</name></author><author><name sortKey="Aguilar, Jf" uniqKey="Aguilar J">JF Aguilar</name></author><author><name sortKey="Panero, Jl" uniqKey="Panero J">JL Panero</name></author><author><name sortKey="Feliner, Gn" uniqKey="Feliner G">GN Feliner</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Terry, R" uniqKey="Terry R">R Terry</name></author><author><name sortKey="Brown, G" uniqKey="Brown G">G Brown</name></author><author><name sortKey="Olmstead, R" uniqKey="Olmstead R">R Olmstead</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Scotland, Rw" uniqKey="Scotland R">RW Scotland</name></author><author><name sortKey="Sweere, Ja" uniqKey="Sweere J">JA Sweere</name></author><author><name sortKey="Reeves, Pa" uniqKey="Reeves P">PA Reeves</name></author><author><name sortKey="Olmstead, Rg" uniqKey="Olmstead R">RG Olmstead</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Catalan, P" uniqKey="Catalan P">P Catalan</name></author><author><name sortKey="Kellogg, Ea" uniqKey="Kellogg E">EA Kellogg</name></author><author><name sortKey="Olmstead, Rg" uniqKey="Olmstead R">RG Olmstead</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Palmer, Jd" uniqKey="Palmer J">JD Palmer</name></author><author><name sortKey="Jansen, Rk" uniqKey="Jansen R">RK Jansen</name></author><author><name sortKey="Michaels, Hj" uniqKey="Michaels H">HJ Michaels</name></author><author><name sortKey="Chase, Mw" uniqKey="Chase M">MW Chase</name></author><author><name sortKey="Manhart, Jr" uniqKey="Manhart J">JR Manhart</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kajita, T" uniqKey="Kajita T">T Kajita</name></author><author><name sortKey="Kamiya, K" uniqKey="Kamiya K">K Kamiya</name></author><author><name sortKey="Nakamura, K" uniqKey="Nakamura K">K Nakamura</name></author><author><name sortKey="Tachida, H" uniqKey="Tachida H">H Tachida</name></author><author><name sortKey="Wickneswari, R" uniqKey="Wickneswari R">R Wickneswari</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lee, Jh" uniqKey="Lee J">JH Lee</name></author><author><name sortKey="Lee, Jw" uniqKey="Lee J">JW Lee</name></author><author><name sortKey="Sung, Js" uniqKey="Sung J">JS Sung</name></author><author><name sortKey="Bang, Kh" uniqKey="Bang K">KH Bang</name></author><author><name sortKey="Moon, Sg" uniqKey="Moon S">SG Moon</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tamura, K" uniqKey="Tamura K">K Tamura</name></author><author><name sortKey="Nei, M" uniqKey="Nei M">M Nei</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Daniell, H" uniqKey="Daniell H">H Daniell</name></author><author><name sortKey="Lee, Sb" uniqKey="Lee S">SB Lee</name></author><author><name sortKey="Grevich, J" uniqKey="Grevich J">J Grevich</name></author><author><name sortKey="Saski, C" uniqKey="Saski C">C Saski</name></author><author><name sortKey="Quesada Vargas, T" uniqKey="Quesada Vargas T">T Quesada-Vargas</name></author></analytic></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI><pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">PLoS One</journal-id><journal-id journal-id-type="iso-abbrev">PLoS ONE</journal-id><journal-id journal-id-type="publisher-id">plos</journal-id><journal-id journal-id-type="pmc">plosone</journal-id><journal-title-group><journal-title>PLoS ONE</journal-title></journal-title-group><issn pub-type="epub">1932-6203</issn><publisher><publisher-name>Public Library of Science</publisher-name><publisher-loc>San Francisco, USA</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">23460871</article-id><article-id pub-id-type="pmc">3583863</article-id><article-id pub-id-type="publisher-id">PONE-D-12-27686</article-id><article-id pub-id-type="doi">10.1371/journal.pone.0057533</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Agriculture</subject><subj-group><subject>Agricultural Biotechnology</subject><subj-group><subject>Marker-Assisted Selection</subject></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Biology</subject><subj-group><subject>Biochemistry</subject><subj-group><subject>Nucleic Acids</subject></subj-group></subj-group><subj-group><subject>Evolutionary Biology</subject><subj-group><subject>Genomic Evolution</subject></subj-group></subj-group><subj-group><subject>Genomics</subject><subj-group><subject>Genome Sequencing</subject><subject>Structural Genomics</subject></subj-group></subj-group><subj-group><subject>Molecular Cell Biology</subject><subj-group><subject>Nucleic Acids</subject><subj-group><subject>DNA</subject></subj-group></subj-group><subj-group><subject>Plant Cell Biology</subject><subj-group><subject>Chloroplast</subject></subj-group></subj-group></subj-group><subj-group><subject>Plant Science</subject><subj-group><subject>Botany</subject><subj-group><subject>Ethnobotany</subject></subj-group></subj-group><subj-group><subject>Plant Cell Biology</subject><subj-group><subject>Chloroplast</subject></subj-group></subj-group><subj-group><subject>Plant Phylogenetics</subject></subj-group></subj-group></subj-group></article-categories><title-group><article-title>Complete Chloroplast Genome Sequences of Mongolia Medicine <italic>Artemisia frigida</italic> and Phylogenetic Relationships with Other Plants</article-title><alt-title alt-title-type="running-head">Complete Chloroplast Genome of <italic>Artemisia frigida</italic></alt-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Liu</surname><given-names>Yue</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff2"><sup>2</sup></xref><xref ref-type="aff" rid="aff3"><sup>3</sup></xref><xref ref-type="aff" rid="aff4"><sup>4</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib><contrib contrib-type="author"><name><surname>Huo</surname><given-names>Naxin</given-names></name><xref ref-type="aff" rid="aff3"><sup>3</sup></xref></contrib><contrib contrib-type="author"><name><surname>Dong</surname><given-names>Lingli</given-names></name><xref ref-type="aff" rid="aff3"><sup>3</sup></xref></contrib><contrib contrib-type="author"><name><surname>Wang</surname><given-names>Yi</given-names></name><xref ref-type="aff" rid="aff3"><sup>3</sup></xref></contrib><contrib contrib-type="author"><name><surname>Zhang</surname><given-names>Shuixian</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff5"><sup>5</sup></xref></contrib><contrib contrib-type="author"><name><surname>Young</surname><given-names>Hugh A.</given-names></name><xref ref-type="aff" rid="aff3"><sup>3</sup></xref></contrib><contrib contrib-type="author"><name><surname>Feng</surname><given-names>Xiaoxiao</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff5"><sup>5</sup></xref></contrib><contrib contrib-type="author"><name><surname>Gu</surname><given-names>Yong Qiang</given-names></name><xref ref-type="aff" rid="aff3"><sup>3</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib></contrib-group><aff id="aff1"><label>1</label><addr-line>College of Life and Environmental Sciences, Minzu University of China, Beijing, China</addr-line></aff><aff id="aff2"><label>2</label><addr-line>Institute of Chinese Materia Medica, China Academy of Traditional Chinese Medicine, Beijing, China</addr-line></aff><aff id="aff3"><label>3</label><addr-line>Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture (USDA-ARS), Albany, California, United States of America</addr-line></aff><aff id="aff4"><label>4</label><addr-line>Department of Plant Science, University of California Davis, Davis, California, United States of America</addr-line></aff><aff id="aff5"><label>5</label><addr-line>Graduate School, Minzu University of China, Beijing, China</addr-line></aff><contrib-group><contrib contrib-type="editor"><name><surname>Badger</surname><given-names>Jonathan H.</given-names></name><role>Editor</role><xref ref-type="aff" rid="edit1"></xref></contrib></contrib-group><aff id="edit1"><addr-line>J. Craig Venter Institute, United States of America</addr-line></aff><author-notes><corresp id="cor1">* E-mail: <email>yong.gu@ars.usda.gov</email> (YQG); <email>yueliu@caas.net.cn</email> (YL)</corresp><fn fn-type="conflict"><p><bold>Competing Interests: </bold>The authors have declared that no competing interests exist.</p></fn><fn fn-type="con"><p>Conceived and designed the experiments: YL YQG. Performed the experiments: YL LD SZ XF. Analyzed the data: YL NH LD YW. Contributed reagents/materials/analysis tools: LD YQG HAY. Wrote the paper: YL YQG HAY.</p></fn></author-notes><pub-date pub-type="collection"><year>2013</year></pub-date><pub-date pub-type="epub"><day>27</day><month>2</month><year>2013</year></pub-date><volume>8</volume><issue>2</issue><elocation-id>e57533</elocation-id><history><date date-type="received"><day>10</day><month>9</month><year>2012</year></date><date date-type="accepted"><day>22</day><month>1</month><year>2013</year></date></history><permissions><copyright-year>2013</copyright-year><license><license-p>This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.</license-p></license></permissions><abstract><sec><title>Background</title><p><italic>Artemisia frigida</italic> Willd. is an important Mongolian traditional medicinal plant with pharmacological functions of stanch and detumescence. However, there is little sequence and genomic information available for <italic>Artemisia frigida</italic>, which makes phylogenetic identification, evolutionary studies, and genetic improvement of its value very difficult. We report the complete chloroplast genome sequence of <italic>Artemisia frigida</italic> based on 454 pyrosequencing.</p></sec><sec><title>Methodology/Principal Findings</title><p>The complete chloroplast genome of <italic>Artemisia frigida</italic> is 151,076 bp including a large single copy (LSC) region of 82,740 bp, a small single copy (SSC) region of 18,394 bp and a pair of inverted repeats (IRs) of 24,971 bp. The genome contains 114 unique genes and 18 duplicated genes. The chloroplast genome of <italic>Artemisia frigida</italic> contains a small 3.4 kb inversion within a large 23 kb inversion in the LSC region, a unique feature in Asteraceae. The gene order in the SSC region of <italic>Artemisia frigida</italic> is inverted compared with the other 6 Asteraceae species with the chloroplast genomes sequenced. This inversion is likely caused by an intramolecular recombination event only occurred in <italic>Artemisia frigida</italic>. The existence of rich SSR loci in the <italic>Artemisia frigida</italic> chloroplast genome provides a rare opportunity to study population genetics of this Mongolian medicinal plant. Phylogenetic analysis demonstrates a sister relationship between <italic>Artemisia frigida</italic> and four other species in Asteraceae, including <italic>Ageratina adenophora, Helianthus annuus, Guizotia abyssinica</italic> and <italic>Lactuca sativa,</italic> based on 61 protein-coding sequences. Furthermore, <italic>Artemisia frigida</italic> was placed in the tribe Anthemideae in the subfamily Asteroideae (Asteraceae) based on <italic>ndhF</italic> and <italic>trnL-F</italic> sequence comparisons.</p></sec><sec><title>Conclusion</title><p>The chloroplast genome sequence of <italic>Artemisia frigida</italic> was assembled and analyzed in this study, representing the first plastid genome sequenced in the Anthemideae tribe. This complete chloroplast genome sequence will be useful for molecular ecology and molecular phylogeny studies within <italic>Artemisia</italic> species and also within the Asteraceae family.</p></sec></abstract><funding-group><funding-statement>This work was supported by National Science Foundation of China (30801554 and 81110108011), China Postdoctoral Science Foundation (20110490556), 111 Project (B08044), 985 Project of Minzu University of China (MUC98504-14 and MUC98507-08), and 211 Project of Minzu University of China. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</funding-statement></funding-group><counts><page-count count="14"></page-count></counts></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Bois/explor/OrangerV1/Data/Pmc/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001133 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Pmc/Curation/biblio.hfd -nk 001133 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Bois
|area= OrangerV1
|flux= Pmc
|étape= Curation
|type= RBID
|clé= PMC:3583863
|texte= Complete Chloroplast Genome Sequences of Mongolia Medicine Artemisia frigida and Phylogenetic Relationships with Other Plants
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Pmc/Curation/RBID.i -Sk "pubmed:23460871" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Pmc/Curation/biblio.hfd \
| NlmPubMed2Wicri -a OrangerV1
| This area was generated with Dilib version V0.6.25. |  |