PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants
Identifieur interne : 001078 ( Pmc/Curation ); précédent : 001077; suivant : 001079PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants
Auteurs : Walter Sanseverino [Italie, Espagne] ; Antonio Hermoso [Espagne] ; Raffaella D Lessandro [Italie] ; Anna Vlasova [Espagne] ; Giuseppe Andolfo [Italie] ; Luigi Frusciante [Italie] ; Ernesto Lowy [Espagne] ; Guglielmo Roma [Espagne] ; Maria Raffaella Ercolano [Italie]Source :
- Nucleic Acids Research [ 0305-1048 ] ; 2012.
Abstract
The Plant Resistance Genes database (PRGdb;
Url:
DOI: 10.1093/nar/gks1183
PubMed: 23161682
PubMed Central: 3531111
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of Soil, Plant, Environmental and Animal Production Sciences, University of Naples “Federico II”, Via Università 100, 80055 Portici, Italy,</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples “Federico II”, Via Università 100, 80055 Portici</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">23161682</idno><idno type="pmc">3531111</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531111</idno><idno type="RBID">PMC:3531111</idno><idno type="doi">10.1093/nar/gks1183</idno><date when="2012">2012</date><idno type="wicri:Area/Pmc/Corpus">001079</idno><idno type="wicri:Area/Pmc/Curation">001078</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants</title><author><name sortKey="Sanseverino, Walter" sort="Sanseverino, Walter" uniqKey="Sanseverino W" first="Walter" last="Sanseverino">Walter Sanseverino</name><affiliation wicri:level="1"><nlm:aff id="gks1183-AFF1">Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples “Federico II”, Via Università 100, 80055 Portici, Italy,</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples “Federico II”, Via Università 100, 80055 Portici</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="gks1183-AFF1">Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Bellaterra, 08193 Barcelona,</nlm:aff><country>Espagne</country><placeName><settlement type="city">Barcelone</settlement><region nuts="2" type="region">Catalogne</region></placeName><wicri:regionArea>Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Bellaterra</wicri:regionArea></affiliation></author><author><name sortKey="Hermoso, Antonio" sort="Hermoso, Antonio" uniqKey="Hermoso A" first="Antonio" last="Hermoso">Antonio Hermoso</name><affiliation wicri:level="3"><nlm:aff id="gks1183-AFF1">Bioinformatics Core Facility, Centre for Genomic Regulation (CRG), Dr. Aiguader 88, Barcelona,</nlm:aff><country>Espagne</country><placeName><settlement type="city">Barcelone</settlement><region nuts="2" type="region">Catalogne</region></placeName><wicri:orgArea>Bioinformatics Core Facility, Centre for Genomic Regulation (CRG), Dr. Aiguader 88</wicri:orgArea></affiliation><affiliation wicri:level="1"><nlm:aff wicri:cut=" and" id="gks1183-AFF1">Universitat Pompeu Fabra (UPF), 08003 Barcelona</nlm:aff><country>Espagne</country><placeName><settlement type="city">Barcelone</settlement><region nuts="2" type="region">Catalogne</region></placeName><wicri:regionArea>Universitat Pompeu Fabra (UPF)</wicri:regionArea></affiliation></author><author><name sortKey="D Lessandro, Raffaella" sort="D Lessandro, Raffaella" uniqKey="D Lessandro R" first="Raffaella" last="D Lessandro">Raffaella D Lessandro</name><affiliation wicri:level="1"><nlm:aff id="gks1183-AFF1">Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples “Federico II”, Via Università 100, 80055 Portici, Italy,</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples “Federico II”, Via Università 100, 80055 Portici</wicri:regionArea></affiliation></author><author><name sortKey="Vlasova, Anna" sort="Vlasova, Anna" uniqKey="Vlasova A" first="Anna" last="Vlasova">Anna Vlasova</name><affiliation wicri:level="1"><nlm:aff wicri:cut=" and" id="gks1183-AFF1">Universitat Pompeu Fabra (UPF), 08003 Barcelona</nlm:aff><country>Espagne</country><placeName><settlement 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(CRG), Dr. Aiguader 88, Barcelona,</nlm:aff><country>Espagne</country><placeName><settlement type="city">Barcelone</settlement><region nuts="2" type="region">Catalogne</region></placeName><wicri:orgArea>Bioinformatics Core Facility, Centre for Genomic Regulation (CRG), Dr. Aiguader 88</wicri:orgArea></affiliation><affiliation wicri:level="1"><nlm:aff wicri:cut=" and" id="gks1183-AFF1">Universitat Pompeu Fabra (UPF), 08003 Barcelona</nlm:aff><country>Espagne</country><placeName><settlement type="city">Barcelone</settlement><region nuts="2" type="region">Catalogne</region></placeName><wicri:regionArea>Universitat Pompeu Fabra (UPF)</wicri:regionArea></affiliation></author><author><name sortKey="Roma, Guglielmo" sort="Roma, Guglielmo" uniqKey="Roma G" first="Guglielmo" last="Roma">Guglielmo Roma</name><affiliation wicri:level="3"><nlm:aff id="gks1183-AFF1">Bioinformatics Core Facility, Centre for Genomic Regulation (CRG), Dr. Aiguader 88, Barcelona,</nlm:aff><country>Espagne</country><placeName><settlement type="city">Barcelone</settlement><region nuts="2" type="region">Catalogne</region></placeName><wicri:orgArea>Bioinformatics Core Facility, Centre for Genomic Regulation (CRG), Dr. Aiguader 88</wicri:orgArea></affiliation><affiliation wicri:level="1"><nlm:aff wicri:cut=" and" id="gks1183-AFF1">Universitat Pompeu Fabra (UPF), 08003 Barcelona</nlm:aff><country>Espagne</country><placeName><settlement type="city">Barcelone</settlement><region nuts="2" type="region">Catalogne</region></placeName><wicri:regionArea>Universitat Pompeu Fabra (UPF)</wicri:regionArea></affiliation></author><author><name sortKey="Ercolano, Maria Raffaella" sort="Ercolano, Maria Raffaella" uniqKey="Ercolano M" first="Maria Raffaella" last="Ercolano">Maria Raffaella Ercolano</name><affiliation wicri:level="1"><nlm:aff id="gks1183-AFF1">Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples “Federico II”, Via Università 100, 80055 Portici, Italy,</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples “Federico II”, Via Università 100, 80055 Portici</wicri:regionArea></affiliation></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The Plant Resistance Genes database (PRGdb; <ext-link ext-link-type="uri" xlink:href="http://prgdb.org">http://prgdb.org</ext-link>) is a comprehensive resource on resistance genes (R-genes), a major class of genes in plant genomes that convey disease resistance against pathogens. Initiated in 2009, the database has grown more than 6-fold to recently include annotation derived from recent plant genome sequencing projects. Release 2.0 currently hosts useful biological information on a set of 112 known and 104 310 putative R-genes present in 233 plant species and conferring resistance to 122 different pathogens. Moreover, the website has been completely redesigned with the implementation of Semantic MediaWiki technologies, which makes our repository freely accessed and easily edited by any scientists. To this purpose, we encourage plant biologist experts to join our annotation effort and share their knowledge on resistance-gene biology with the rest of the scientific community.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Jones, Jd" uniqKey="Jones J">JD Jones</name></author><author><name sortKey="Dangl, Jl" uniqKey="Dangl J">JL Dangl</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sanseverino, W" uniqKey="Sanseverino W">W Sanseverino</name></author><author><name sortKey="Roma, G" uniqKey="Roma G">G Roma</name></author><author><name sortKey="De Simone, M" uniqKey="De Simone M">M De Simone</name></author><author><name sortKey="Faino, L" uniqKey="Faino L">L Faino</name></author><author><name sortKey="Melito, S" uniqKey="Melito S">S Melito</name></author><author><name sortKey="Stupka, E" uniqKey="Stupka E">E Stupka</name></author><author><name sortKey="Frusciante, L" uniqKey="Frusciante L">L 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Nucleic Acids Res</journal-id><journal-id journal-id-type="iso-abbrev">Nucleic Acids Res</journal-id><journal-id journal-id-type="publisher-id">nar</journal-id><journal-id journal-id-type="hwp">nar</journal-id><journal-title-group><journal-title>Nucleic Acids Research</journal-title></journal-title-group><issn pub-type="ppub">0305-1048</issn><issn pub-type="epub">1362-4962</issn><publisher><publisher-name>Oxford University Press</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">23161682</article-id><article-id pub-id-type="pmc">3531111</article-id><article-id pub-id-type="doi">10.1093/nar/gks1183</article-id><article-id pub-id-type="publisher-id">gks1183</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group></article-categories><title-group><article-title>PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Sanseverino</surname><given-names>Walter</given-names></name><xref ref-type="aff" rid="gks1183-AFF1"><sup>1</sup></xref><xref ref-type="aff" rid="gks1183-AFF1"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Hermoso</surname><given-names>Antonio</given-names></name><xref ref-type="aff" rid="gks1183-AFF1"><sup>3</sup></xref><xref ref-type="aff" rid="gks1183-AFF1"><sup>4</sup></xref></contrib><contrib contrib-type="author"><name><surname>D’Alessandro</surname><given-names>Raffaella</given-names></name><xref ref-type="aff" rid="gks1183-AFF1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Vlasova</surname><given-names>Anna</given-names></name><xref ref-type="aff" rid="gks1183-AFF1"><sup>4</sup></xref><xref ref-type="aff" rid="gks1183-AFF1"><sup>5</sup></xref></contrib><contrib contrib-type="author"><name><surname>Andolfo</surname><given-names>Giuseppe</given-names></name><xref ref-type="aff" rid="gks1183-AFF1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Frusciante</surname><given-names>Luigi</given-names></name><xref ref-type="aff" rid="gks1183-AFF1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Lowy</surname><given-names>Ernesto</given-names></name><xref ref-type="aff" rid="gks1183-AFF1"><sup>3</sup></xref><xref ref-type="aff" rid="gks1183-AFF1"><sup>4</sup></xref></contrib><contrib contrib-type="author"><name><surname>Roma</surname><given-names>Guglielmo</given-names></name><xref ref-type="aff" rid="gks1183-AFF1"><sup>3</sup></xref><xref ref-type="aff" rid="gks1183-AFF1"><sup>4</sup></xref></contrib><contrib contrib-type="author"><name><surname>Ercolano</surname><given-names>Maria Raffaella</given-names></name><xref ref-type="aff" rid="gks1183-AFF1"><sup>1</sup></xref><xref ref-type="corresp" rid="gks1183-COR1">*</xref></contrib></contrib-group><aff id="gks1183-AFF1"><sup>1</sup>Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples “Federico II”, Via Università 100, 80055 Portici, Italy,<sup>2</sup>Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Bellaterra, 08193 Barcelona,<sup>3</sup>Bioinformatics Core Facility, Centre for Genomic Regulation (CRG), Dr. Aiguader 88, Barcelona,<sup>4</sup>Universitat Pompeu Fabra (UPF), 08003 Barcelona and<sup>5</sup>Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Dr. Aiguader 88, Barcelona, Spain</aff><author-notes><corresp id="gks1183-COR1">*To whom correspondence should be addressed. Tel: <phone>+39 081 2539431</phone>; Fax: <fax>+39 081 7757935</fax>; Email: <email>ercolano@unina.it</email></corresp><fn><p>The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.</p></fn></author-notes><pub-date pub-type="ppub"><month>1</month><year>2013</year></pub-date><pub-date pub-type="epub"><day>17</day><month>11</month><year>2012</year></pub-date><pub-date pub-type="pmc-release"><day>17</day><month>11</month><year>2012</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on the
<volume>41</volume><issue>Database issue</issue><issue-title>Database issue</issue-title><fpage>D1167</fpage><lpage>D1171</lpage><history><date date-type="received"><day>15</day><month>9</month><year>2012</year></date><date date-type="rev-recd"><day>28</day><month>10</month><year>2012</year></date><date date-type="accepted"><day>28</day><month>10</month><year>2012</year></date></history><permissions><copyright-statement>© The Author(s) 2012. Published by Oxford University Press.</copyright-statement><copyright-year>2012</copyright-year><license license-type="creative-commons" xlink:href="http://creativecommons.org/licenses/by-nc/3.0"><license-p><pmc-comment>CREATIVE COMMONS</pmc-comment>This is an Open Access article distributed under the terms of the Creative Commons Attribution License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by-nc/3.0/">http://creativecommons.org/licenses/by-nc/3.0/</ext-link>), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com.</license-p></license></permissions><abstract><p>The Plant Resistance Genes database (PRGdb; <ext-link ext-link-type="uri" xlink:href="http://prgdb.org">http://prgdb.org</ext-link>) is a comprehensive resource on resistance genes (R-genes), a major class of genes in plant genomes that convey disease resistance against pathogens. Initiated in 2009, the database has grown more than 6-fold to recently include annotation derived from recent plant genome sequencing projects. Release 2.0 currently hosts useful biological information on a set of 112 known and 104 310 putative R-genes present in 233 plant species and conferring resistance to 122 different pathogens. Moreover, the website has been completely redesigned with the implementation of Semantic MediaWiki technologies, which makes our repository freely accessed and easily edited by any scientists. To this purpose, we encourage plant biologist experts to join our annotation effort and share their knowledge on resistance-gene biology with the rest of the scientific community.</p></abstract><counts><page-count count="5"></page-count></counts></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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