Proteome Analysis of Peroxisomes from Etiolated Arabidopsis Seedlings Identifies a Peroxisomal Protease Involved in β-Oxidation and Development1[C][W][OPEN]
Identifieur interne : 000D12 ( Pmc/Curation ); précédent : 000D11; suivant : 000D13Proteome Analysis of Peroxisomes from Etiolated Arabidopsis Seedlings Identifies a Peroxisomal Protease Involved in β-Oxidation and Development1[C][W][OPEN]
Auteurs : Sheng Quan ; Pingfang Yang ; Gaëlle Cassin-Ross ; Navneet Kaur ; Robert Switzenberg ; Kyaw Aung ; Jiying Li ; Jianping HuSource :
- Plant Physiology [ 0032-0889 ] ; 2013.
Abstract
Url:
DOI: 10.1104/pp.113.223453
PubMed: 24130194
PubMed Central: 3850190
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Proteome Analysis of Peroxisomes from Etiolated Arabidopsis Seedlings Identifies a Peroxisomal Protease Involved in β-Oxidation and Development<xref ref-type="author-notes" rid="fn1"><sup>1</sup></xref><xref ref-type="author-notes" rid="fn2"><sup>[C]</sup></xref><xref ref-type="author-notes" rid="fn3"><sup>[W]</sup></xref><xref ref-type="author-notes" rid="fn4"><sup>[OPEN]</sup></xref></title><author><name sortKey="Quan, Sheng" sort="Quan, Sheng" uniqKey="Quan S" first="Sheng" last="Quan">Sheng Quan</name></author><author><name sortKey="Yang, Pingfang" sort="Yang, Pingfang" uniqKey="Yang P" first="Pingfang" last="Yang">Pingfang Yang</name></author><author><name sortKey="Cassin Ross, Gaelle" sort="Cassin Ross, Gaelle" uniqKey="Cassin Ross G" first="Gaëlle" last="Cassin-Ross">Gaëlle Cassin-Ross</name></author><author><name sortKey="Kaur, Navneet" sort="Kaur, Navneet" uniqKey="Kaur N" first="Navneet" last="Kaur">Navneet Kaur</name></author><author><name sortKey="Switzenberg, Robert" sort="Switzenberg, Robert" uniqKey="Switzenberg R" first="Robert" last="Switzenberg">Robert Switzenberg</name></author><author><name sortKey="Aung, Kyaw" sort="Aung, Kyaw" uniqKey="Aung K" first="Kyaw" last="Aung">Kyaw Aung</name></author><author><name sortKey="Li, Jiying" sort="Li, Jiying" uniqKey="Li J" first="Jiying" last="Li">Jiying Li</name></author><author><name sortKey="Hu, Jianping" sort="Hu, Jianping" uniqKey="Hu J" first="Jianping" last="Hu">Jianping Hu</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">24130194</idno><idno type="pmc">3850190</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3850190</idno><idno type="RBID">PMC:3850190</idno><idno type="doi">10.1104/pp.113.223453</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">000D13</idno><idno type="wicri:Area/Pmc/Curation">000D12</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Proteome Analysis of Peroxisomes from Etiolated Arabidopsis Seedlings Identifies a Peroxisomal Protease Involved in β-Oxidation and Development<xref ref-type="author-notes" rid="fn1"><sup>1</sup></xref><xref ref-type="author-notes" rid="fn2"><sup>[C]</sup></xref><xref ref-type="author-notes" rid="fn3"><sup>[W]</sup></xref><xref ref-type="author-notes" rid="fn4"><sup>[OPEN]</sup></xref></title><author><name sortKey="Quan, Sheng" sort="Quan, Sheng" uniqKey="Quan S" first="Sheng" last="Quan">Sheng Quan</name></author><author><name sortKey="Yang, Pingfang" sort="Yang, Pingfang" uniqKey="Yang P" first="Pingfang" last="Yang">Pingfang Yang</name></author><author><name sortKey="Cassin Ross, Gaelle" sort="Cassin Ross, Gaelle" uniqKey="Cassin Ross G" first="Gaëlle" last="Cassin-Ross">Gaëlle Cassin-Ross</name></author><author><name sortKey="Kaur, Navneet" sort="Kaur, Navneet" uniqKey="Kaur N" first="Navneet" last="Kaur">Navneet Kaur</name></author><author><name sortKey="Switzenberg, Robert" sort="Switzenberg, Robert" uniqKey="Switzenberg R" first="Robert" last="Switzenberg">Robert Switzenberg</name></author><author><name sortKey="Aung, Kyaw" sort="Aung, Kyaw" uniqKey="Aung K" first="Kyaw" last="Aung">Kyaw Aung</name></author><author><name sortKey="Li, Jiying" sort="Li, Jiying" uniqKey="Li J" first="Jiying" last="Li">Jiying Li</name></author><author><name sortKey="Hu, Jianping" sort="Hu, Jianping" uniqKey="Hu J" first="Jianping" last="Hu">Jianping Hu</name></author></analytic><series><title level="j">Plant Physiology</title><idno type="ISSN">0032-0889</idno><idno type="eISSN">1532-2548</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>A proteome analysis of peroxisomes from etiolated Arabidopsis seedlings provides a road map of metabolism in a major peroxisomal variant and uncovers the role for a peroxisomal cysteine protease in β-oxidation and development</italic>.</p></div></front></TEI><pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Plant Physiol</journal-id><journal-id journal-id-type="iso-abbrev">Plant Physiol</journal-id><journal-id journal-id-type="hwp">plantphysiol</journal-id><journal-id journal-id-type="publisher-id">aspb</journal-id><journal-title-group><journal-title>Plant Physiology</journal-title></journal-title-group><issn pub-type="ppub">0032-0889</issn><issn pub-type="epub">1532-2548</issn><publisher><publisher-name>American Society of Plant Biologists</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">24130194</article-id><article-id pub-id-type="pmc">3850190</article-id><article-id pub-id-type="publisher-id">223453</article-id><article-id pub-id-type="doi">10.1104/pp.113.223453</article-id><article-categories><subj-group subj-group-type="heading"><subject>Article</subject><subj-group><subject>Biochemistry and Metabolism</subject></subj-group></subj-group></article-categories><title-group><article-title>Proteome Analysis of Peroxisomes from Etiolated Arabidopsis Seedlings Identifies a Peroxisomal Protease Involved in β-Oxidation and Development<xref ref-type="author-notes" rid="fn1"><sup>1</sup></xref><xref ref-type="author-notes" rid="fn2"><sup>[C]</sup></xref><xref ref-type="author-notes" rid="fn3"><sup>[W]</sup></xref><xref ref-type="author-notes" rid="fn4"><sup>[OPEN]</sup></xref></article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Quan</surname><given-names>Sheng</given-names></name><xref ref-type="author-notes" rid="afn1"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Yang</surname><given-names>Pingfang</given-names></name><xref ref-type="author-notes" rid="afn1"><sup>2</sup></xref><xref ref-type="author-notes" rid="afn2"><sup>3</sup></xref></contrib><contrib contrib-type="author"><name><surname>Cassin-Ross</surname><given-names>Gaëlle</given-names></name><xref ref-type="author-notes" rid="afn1"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Kaur</surname><given-names>Navneet</given-names></name><xref ref-type="author-notes" rid="afn1"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Switzenberg</surname><given-names>Robert</given-names></name></contrib><contrib contrib-type="author"><name><surname>Aung</surname><given-names>Kyaw</given-names></name></contrib><contrib contrib-type="author"><name><surname>Li</surname><given-names>Jiying</given-names></name></contrib><contrib contrib-type="author"><name><surname>Hu</surname><given-names>Jianping</given-names></name><xref ref-type="corresp" rid="cor1">*</xref></contrib><aff id="aff1">Department of Energy Plant Research Laboratory (S.Q., P.Y., G.C.-R., N.K., R.S., K.A., J.L., J.H.) and Plant Biology Department (K.A., J.H.), Michigan State University, East Lansing, Michigan 48824</aff></contrib-group><author-notes><fn id="fn1" fn-type="supported-by"><label>1</label><p>This work was supported by the National Science Foundation Arabidopsis 2010 Program (grant no. MCB 0618335 to J.H.) and the Chemical Sciences, Geosciences, and Biosciences Division, Office of Basic Energy Sciences, Office of Science, U.S. Department of Energy (grant no. DE–FG02–91ER20021 to J.H.).</p></fn><fn id="afn1" fn-type="equal"><label>2</label><p>These authors contributed equally to the article.</p></fn><fn id="afn2" fn-type="present-address"><label>3</label><p>Present address: Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China 430074.</p></fn><corresp id="cor1"><label>*</label>Address correspondence to <email>huji@msu.edu</email>.</corresp><fn id="afn3"><p>The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (<ext-link ext-link-type="uri" xlink:href="http://www.plantphysiol.org">www.plantphysiol.org</ext-link>) is: Jianping Hu (<email>huji@msu.edu</email>).</p></fn><fn id="fn2"><label>[C]</label><p>Some figures in this article are displayed in color online but in black and white in the print edition.</p></fn><fn id="fn3"><label>[W]</label><p>The online version of this article contains Web-only data.</p></fn><fn id="fn4"><label>[OPEN]</label><p>Articles can be viewed online without a subscription.</p></fn><fn><p><ext-link ext-link-type="uri" xlink:href="http://www.plantphysiol.org/cgi/doi/10.1104/pp.113.223453">www.plantphysiol.org/cgi/doi/10.1104/pp.113.223453</ext-link></p></fn></author-notes><pub-date pub-type="ppub"><month>12</month><year>2013</year></pub-date><pub-date pub-type="epub"><day>15</day><month>10</month><year>2013</year></pub-date><pub-date pub-type="pmc-release"><day>15</day><month>10</month><year>2013</year></pub-date><volume>163</volume><issue>4</issue><fpage>1518</fpage><lpage>1538</lpage><history><date date-type="received"><day>22</day><month>6</month><year>2013</year></date><date date-type="accepted"><day>15</day><month>10</month><year>2013</year></date></history><permissions><copyright-statement>© 2013 American Society of Plant Biologists. All Rights Reserved.</copyright-statement><copyright-year>2013</copyright-year></permissions><self-uri xlink:role="icon" xlink:type="simple" xlink:href="PP_223453_ic1.gif"></self-uri><abstract abstract-type="precis"><p><italic>A proteome analysis of peroxisomes from etiolated Arabidopsis seedlings provides a road map of metabolism in a major peroxisomal variant and uncovers the role for a peroxisomal cysteine protease in β-oxidation and development</italic>.</p></abstract><abstract><p>Plant peroxisomes are highly dynamic organelles that mediate a suite of metabolic processes crucial to development. Peroxisomes in seeds/dark-grown seedlings and in photosynthetic tissues constitute two major subtypes of plant peroxisomes, which had been postulated to contain distinct primary biochemical properties. Multiple in-depth proteomic analyses had been performed on leaf peroxisomes, yet the major makeup of peroxisomes in seeds or dark-grown seedlings remained unclear. To compare the metabolic pathways of the two dominant plant peroxisomal subtypes and discover new peroxisomal proteins that function specifically during seed germination, we performed proteomic analysis of peroxisomes from etiolated Arabidopsis (<italic>Arabidopsis thaliana</italic>) seedlings. The detection of 77 peroxisomal proteins allowed us to perform comparative analysis with the peroxisomal proteome of green leaves, which revealed a large overlap between these two primary peroxisomal variants. Subcellular targeting analysis by fluorescence microscopy validated around 10 new peroxisomal proteins in Arabidopsis. Mutant analysis suggested the role of the cysteine protease RESPONSE TO DROUGHT21A-LIKE1 in β-oxidation, seed germination, and growth. This work provides a much-needed road map of a major type of plant peroxisome and has established a basis for future investigations of peroxisomal proteolytic processes to understand their roles in development and in plant interaction with the environment.</p></abstract><counts><page-count count="21"></page-count></counts></article-meta><notes><glossary><title>Glossary</title><def-list><def-item><term id="term1">ICL</term><def id="def1"><p>isocitrate lyase</p></def></def-item><def-item><term id="term2">MLS</term><def id="def2"><p>malate synthase</p></def></def-item><def-item><term id="term3">1-DE</term><def id="def3"><p>one-dimensional gel electrophoresis</p></def></def-item><def-item><term id="term4">LC-MS/MS</term><def id="def4"><p>liquid chromatography-tandem mass spectrometry</p></def></def-item><def-item><term id="term5">QV</term><def id="def5"><p>quantitative value</p></def></def-item><def-item><term id="term6">YFP</term><def id="def6"><p>yellow fluorescent protein</p></def></def-item><def-item><term id="term7">T-DNA</term><def id="def7"><p>transfer DNA</p></def></def-item><def-item><term id="term8">RT</term><def id="def8"><p>reverse transcription</p></def></def-item><def-item><term id="term9">IBA</term><def id="def9"><p>indole-3-butyric acid</p></def></def-item><def-item><term id="term10">ABA</term><def id="def10"><p>abscisic acid</p></def></def-item><def-item><term id="term11">BA</term><def id="def11"><p>benzoic acid</p></def></def-item><def-item><term id="term12">1/2 LS</term><def id="def12"><p>one-half-strength Linsmaier and Skoog</p></def></def-item><def-item><term id="term13">MS/MS</term><def id="def13"><p>tandem mass spectrometry</p></def></def-item><def-item><term id="term14">VDAC</term><def id="def14"><p>voltage-dependent anion-selective channel</p></def></def-item></def-list></glossary></notes></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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