Selection on Meiosis Genes in Diploid and Tetraploid Arabidopsis arenosa
Identifieur interne : 000C74 ( Pmc/Curation ); précédent : 000C73; suivant : 000C75Selection on Meiosis Genes in Diploid and Tetraploid Arabidopsis arenosa
Auteurs : Kevin M. Wright [États-Unis] ; Brian Arnold [États-Unis] ; Katherine Xue [États-Unis] ; Maria Šurinová [République tchèque] ; Jeremy O Onnell [États-Unis] ; Kirsten Bomblies [États-Unis]Source :
- Molecular Biology and Evolution [ 0737-4038 ] ; 2014.
Abstract
Meiotic chromosome segregation is critical for fertility across eukaryotes, and core meiotic processes are well conserved even between kingdoms. Nevertheless, recent work in animals has shown that at least some meiosis genes are highly diverse or strongly differentiated among populations. What drives this remains largely unknown. We previously showed that autotetraploid
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DOI: 10.1093/molbev/msu398
PubMed: 25543117
PubMed Central: 4379401
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<front><div type="abstract" xml:lang="en"><p>Meiotic chromosome segregation is critical for fertility across eukaryotes, and core meiotic processes are well conserved even between kingdoms. Nevertheless, recent work in animals has shown that at least some meiosis genes are highly diverse or strongly differentiated among populations. What drives this remains largely unknown. We previously showed that autotetraploid <italic>Arabidopsis arenosa</italic>
evolved stable meiosis, likely through reduced crossover rates, and that associated with this there is strong evidence for selection in a subset of meiosis genes known to affect axis formation, synapsis, and crossover frequency. Here, we use genome-wide data to study the molecular evolution of 70 meiosis genes in a much wider sample of <italic>A. arenosa</italic>
. We sample the polyploid lineage, a diploid lineage from the Carpathian Mountains, and a more distantly related diploid lineage from the adjacent, but biogeographically distinct Pannonian Basin. We find that not only did selection act on meiosis genes in the polyploid lineage but also independently on a smaller subset of meiosis genes in Pannonian diploids. Functionally related genes are targeted by selection in these distinct contexts, and in two cases, independent sweeps occurred in the same loci. The tetraploid lineage has sustained selection on more genes, has more amino acid changes in each, and these more often affect conserved or potentially functional sites. We hypothesize that Pannonian diploid and tetraploid <italic>A. arenosa</italic>
experienced selection on structural proteins that mediate sister chromatid cohesion, the formation of meiotic chromosome axes, and synapsis, likely for different underlying reasons.</p>
</div>
</front>
</TEI>
<pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Mol Biol Evol</journal-id>
<journal-id journal-id-type="iso-abbrev">Mol. Biol. Evol</journal-id>
<journal-id journal-id-type="publisher-id">molbev</journal-id>
<journal-id journal-id-type="hwp">molbiolevol</journal-id>
<journal-title-group><journal-title>Molecular Biology and Evolution</journal-title>
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<publisher><publisher-name>Oxford University Press</publisher-name>
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<article-id pub-id-type="doi">10.1093/molbev/msu398</article-id>
<article-id pub-id-type="publisher-id">msu398</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Discoveries</subject>
</subj-group>
</article-categories>
<title-group><article-title>Selection on Meiosis Genes in Diploid and Tetraploid <italic>Arabidopsis arenosa</italic>
</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Wright</surname>
<given-names>Kevin M.</given-names>
</name>
<xref ref-type="aff" rid="msu398-AFF1"><sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Arnold</surname>
<given-names>Brian</given-names>
</name>
<xref ref-type="aff" rid="msu398-AFF1"><sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Xue</surname>
<given-names>Katherine</given-names>
</name>
<xref ref-type="aff" rid="msu398-AFF1"><sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Šurinová</surname>
<given-names>Maria</given-names>
</name>
<xref ref-type="aff" rid="msu398-AFF2"><sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>O’Connell</surname>
<given-names>Jeremy</given-names>
</name>
<xref ref-type="aff" rid="msu398-AFF1"><sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Bomblies</surname>
<given-names>Kirsten</given-names>
</name>
<xref ref-type="corresp" rid="msu398-COR1">*</xref>
<xref ref-type="aff" rid="msu398-AFF1"><sup>1</sup>
</xref>
</contrib>
<aff id="msu398-AFF1"><sup>1</sup>
Department of Evolutionary and Organismic Biology, Harvard University</aff>
<aff id="msu398-AFF2"><sup>2</sup>
Institute of Botany, Academy of Sciences of the Czech Republic, Pruhonice, Czech Republic</aff>
</contrib-group>
<author-notes><corresp id="msu398-COR1"><bold>*Corresponding author:</bold>
E-mail: <email>kbomblies@oeb.harvard.edu</email>
.</corresp>
<fn id="FN1"><p><bold>Associate editor:</bold>
Stephen Wright</p>
</fn>
</author-notes>
<pub-date pub-type="ppub"><month>4</month>
<year>2015</year>
</pub-date>
<pub-date pub-type="epub"><day>26</day>
<month>12</month>
<year>2014</year>
</pub-date>
<pub-date pub-type="pmc-release"><day>1</day>
<month>4</month>
<year>2016</year>
</pub-date>
<pmc-comment> PMC Release delay is 12 months and
0 days and was based on the . </pmc-comment>
<volume>32</volume>
<issue>4</issue>
<fpage>944</fpage>
<lpage>955</lpage>
<permissions><copyright-statement>© The Author 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com</copyright-statement>
<copyright-year>2014</copyright-year>
</permissions>
<abstract><p>Meiotic chromosome segregation is critical for fertility across eukaryotes, and core meiotic processes are well conserved even between kingdoms. Nevertheless, recent work in animals has shown that at least some meiosis genes are highly diverse or strongly differentiated among populations. What drives this remains largely unknown. We previously showed that autotetraploid <italic>Arabidopsis arenosa</italic>
evolved stable meiosis, likely through reduced crossover rates, and that associated with this there is strong evidence for selection in a subset of meiosis genes known to affect axis formation, synapsis, and crossover frequency. Here, we use genome-wide data to study the molecular evolution of 70 meiosis genes in a much wider sample of <italic>A. arenosa</italic>
. We sample the polyploid lineage, a diploid lineage from the Carpathian Mountains, and a more distantly related diploid lineage from the adjacent, but biogeographically distinct Pannonian Basin. We find that not only did selection act on meiosis genes in the polyploid lineage but also independently on a smaller subset of meiosis genes in Pannonian diploids. Functionally related genes are targeted by selection in these distinct contexts, and in two cases, independent sweeps occurred in the same loci. The tetraploid lineage has sustained selection on more genes, has more amino acid changes in each, and these more often affect conserved or potentially functional sites. We hypothesize that Pannonian diploid and tetraploid <italic>A. arenosa</italic>
experienced selection on structural proteins that mediate sister chromatid cohesion, the formation of meiotic chromosome axes, and synapsis, likely for different underlying reasons.</p>
</abstract>
<kwd-group><kwd>meiosis</kwd>
<kwd>evolution</kwd>
<kwd>polyploidy</kwd>
</kwd-group>
<counts><page-count count="12"></page-count>
</counts>
</article-meta>
</front>
</pmc>
</record>
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