Transcriptional profile of sweet orange in response to chitosan and salicylic acid
Identifieur interne : 000580 ( Pmc/Curation ); précédent : 000579; suivant : 000581Transcriptional profile of sweet orange in response to chitosan and salicylic acid
Auteurs : Danila Souza Oliveira Coqueiro ; Alessandra Alves De Souza ; Marco Aurélio Takita ; Carolina Munari Rodrigues ; Luciano Takeshi Kishi ; Marcos Antonio MachadoSource :
- BMC Genomics [ 1471-2164 ] ; 2015.
Abstract
Resistance inducers have been used in annual crops as an alternative for disease control. Wood perennial fruit trees, such as those of the citrus species, are candidates for treatment with resistance inducers, such as salicylic acid (SA) and chitosan (CHI). However, the involved mechanisms in resistance induced by elicitors in citrus are currently few known.
In the present manuscript, we report information regarding the transcriptional changes observed in sweet orange in response to exogenous applications of SA and CHI using RNA-seq technology. More genes were induced by SA treatment than by CHI treatment. In total, 1,425 differentially expressed genes (DEGs) were identified following treatment with SA, including the important genes
We expanded the available information regarding induced defense by elicitors in a species of
The online version of this article (doi:10.1186/s12864-015-1440-5) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1186/s12864-015-1440-5
PubMed: 25887907
PubMed Central: 4415254
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Danila Souza Oliveira Coqueiro<affiliation><nlm:aff id="Aff1">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo Brasil</nlm:aff>
<wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry>
</affiliation>
<affiliation><nlm:aff id="Aff2">Universidade Federal da Bahia, UFBA, Vitória da Conquista, Bahia Brasil</nlm:aff>
<wicri:noCountry code="subfield">Bahia Brasil</wicri:noCountry>
</affiliation>
<affiliation><nlm:aff id="Aff2">Universidade Federal da Bahia, UFBA, Vitória da Conquista, Bahia Brasil</nlm:aff>
<wicri:noCountry code="subfield">Bahia Brasil</wicri:noCountry>
</affiliation>
<affiliation><nlm:aff id="Aff1">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo Brasil</nlm:aff>
<wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry>
</affiliation>
<affiliation><nlm:aff id="Aff1">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo Brasil</nlm:aff>
<wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry>
</affiliation>
<affiliation><nlm:aff id="Aff1">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo Brasil</nlm:aff>
<wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry>
</affiliation>
<affiliation><nlm:aff id="Aff3">Universidade Federal de São Carlos, São Carlos, São Paulo Brasil</nlm:aff>
<wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry>
</affiliation>
<affiliation><nlm:aff id="Aff1">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo Brasil</nlm:aff>
<wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry>
</affiliation>
Le document en format XML
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<author><name sortKey="De Souza, Alessandra Alves" sort="De Souza, Alessandra Alves" uniqKey="De Souza A" first="Alessandra Alves" last="De Souza">Alessandra Alves De Souza</name>
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<author><name sortKey="Machado, Marcos Antonio" sort="Machado, Marcos Antonio" uniqKey="Machado M" first="Marcos Antonio" last="Machado">Marcos Antonio Machado</name>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Transcriptional profile of sweet orange in response to chitosan and salicylic acid</title>
<author><name sortKey="Coqueiro, Danila Souza Oliveira" sort="Coqueiro, Danila Souza Oliveira" uniqKey="Coqueiro D" first="Danila Souza Oliveira" last="Coqueiro">Danila Souza Oliveira Coqueiro</name>
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<affiliation><nlm:aff id="Aff2">Universidade Federal da Bahia, UFBA, Vitória da Conquista, Bahia Brasil</nlm:aff>
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<author><name sortKey="De Souza, Alessandra Alves" sort="De Souza, Alessandra Alves" uniqKey="De Souza A" first="Alessandra Alves" last="De Souza">Alessandra Alves De Souza</name>
<affiliation><nlm:aff id="Aff1">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo Brasil</nlm:aff>
<wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry>
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<author><name sortKey="Takita, Marco Aurelio" sort="Takita, Marco Aurelio" uniqKey="Takita M" first="Marco Aurélio" last="Takita">Marco Aurélio Takita</name>
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<wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry>
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<author><name sortKey="Kishi, Luciano Takeshi" sort="Kishi, Luciano Takeshi" uniqKey="Kishi L" first="Luciano Takeshi" last="Kishi">Luciano Takeshi Kishi</name>
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<author><name sortKey="Machado, Marcos Antonio" sort="Machado, Marcos Antonio" uniqKey="Machado M" first="Marcos Antonio" last="Machado">Marcos Antonio Machado</name>
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<wicri:noCountry code="subfield">São Paulo Brasil</wicri:noCountry>
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<series><title level="j">BMC Genomics</title>
<idno type="eISSN">1471-2164</idno>
<imprint><date when="2015">2015</date>
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<front><div type="abstract" xml:lang="en"><sec><title>Background</title>
<p>Resistance inducers have been used in annual crops as an alternative for disease control. Wood perennial fruit trees, such as those of the citrus species, are candidates for treatment with resistance inducers, such as salicylic acid (SA) and chitosan (CHI). However, the involved mechanisms in resistance induced by elicitors in citrus are currently few known.</p>
</sec>
<sec><title>Results</title>
<p>In the present manuscript, we report information regarding the transcriptional changes observed in sweet orange in response to exogenous applications of SA and CHI using RNA-seq technology. More genes were induced by SA treatment than by CHI treatment. In total, 1,425 differentially expressed genes (DEGs) were identified following treatment with SA, including the important genes <italic>WRKY5</italic>
0, <italic>PR2,</italic>
and <italic>PR9</italic>
, which are known to participate in the salicylic acid signaling pathway, and genes involved in ethylene/Jasmonic acid biosynthesis (<italic>ACS1</italic>
2, <italic>AP2</italic>
domain-containing transcription factor, and <italic>OPR3</italic>
). In addition, SA treatment promoted the induction of a subset of genes involved in several metabolic processes, such as redox states and secondary metabolism, which are associated with biotic stress. For CHI treatment, there were 640 DEGs, many of them involved in secondary metabolism. For both SA and CHI treatments, the auxin pathway genes were repressed, but SA treatment promoted induction in the ethylene and jasmonate acid pathway genes, in addition to repressing the abscisic acid pathway genes. Chitosan treatment altered some hormone metabolism pathways. The DEGs were validated by quantitative Real-Time PCR (qRT-PCR), and the results were consistent with the RNA-seq data, with a high correlation between the two analyses.</p>
</sec>
<sec><title>Conclusions</title>
<p>We expanded the available information regarding induced defense by elicitors in a species of <italic>Citrus</italic>
that is susceptible to various diseases and identified the molecular mechanisms by which this defense might be mediated.</p>
</sec>
<sec><title>Electronic supplementary material</title>
<p>The online version of this article (doi:10.1186/s12864-015-1440-5) contains supplementary material, which is available to authorized users.</p>
</sec>
</div>
</front>
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<pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">BMC Genomics</journal-id>
<journal-id journal-id-type="iso-abbrev">BMC Genomics</journal-id>
<journal-title-group><journal-title>BMC Genomics</journal-title>
</journal-title-group>
<issn pub-type="epub">1471-2164</issn>
<publisher><publisher-name>BioMed Central</publisher-name>
<publisher-loc>London</publisher-loc>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">25887907</article-id>
<article-id pub-id-type="pmc">4415254</article-id>
<article-id pub-id-type="publisher-id">1440</article-id>
<article-id pub-id-type="doi">10.1186/s12864-015-1440-5</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject>
</subj-group>
</article-categories>
<title-group><article-title>Transcriptional profile of sweet orange in response to chitosan and salicylic acid</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Coqueiro</surname>
<given-names>Danila Souza Oliveira</given-names>
</name>
<address><email>danilasoc@yahoo.com.br</email>
</address>
<xref ref-type="aff" rid="Aff1"></xref>
<xref ref-type="aff" rid="Aff2"></xref>
</contrib>
<contrib contrib-type="author"><name><surname>de Souza</surname>
<given-names>Alessandra Alves</given-names>
</name>
<address><email>alessandra@centrodecitricultura.br</email>
</address>
<xref ref-type="aff" rid="Aff1"></xref>
</contrib>
<contrib contrib-type="author"><name><surname>Takita</surname>
<given-names>Marco Aurélio</given-names>
</name>
<address><email>takita@centrodecitricultura.br</email>
</address>
<xref ref-type="aff" rid="Aff1"></xref>
</contrib>
<contrib contrib-type="author"><name><surname>Rodrigues</surname>
<given-names>Carolina Munari</given-names>
</name>
<address><email>carolina@centrodecitricultura.br</email>
</address>
<xref ref-type="aff" rid="Aff1"></xref>
</contrib>
<contrib contrib-type="author"><name><surname>Kishi</surname>
<given-names>Luciano Takeshi</given-names>
</name>
<address><email>luciano.kishi@gmail.com</email>
</address>
<xref ref-type="aff" rid="Aff3"></xref>
</contrib>
<contrib contrib-type="author" corresp="yes"><name><surname>Machado</surname>
<given-names>Marcos Antonio</given-names>
</name>
<address><email>marcos@centrodecitricultura.br</email>
</address>
<xref ref-type="aff" rid="Aff1"></xref>
</contrib>
<aff id="Aff1"><label></label>
Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, IAC, Cordeirópolis, São Paulo Brasil</aff>
<aff id="Aff2"><label></label>
Universidade Federal da Bahia, UFBA, Vitória da Conquista, Bahia Brasil</aff>
<aff id="Aff3"><label></label>
Universidade Federal de São Carlos, São Carlos, São Paulo Brasil</aff>
</contrib-group>
<pub-date pub-type="epub"><day>12</day>
<month>4</month>
<year>2015</year>
</pub-date>
<pub-date pub-type="pmc-release"><day>12</day>
<month>4</month>
<year>2015</year>
</pub-date>
<pub-date pub-type="collection"><year>2015</year>
</pub-date>
<volume>16</volume>
<issue>1</issue>
<elocation-id>288</elocation-id>
<history><date date-type="received"><day>17</day>
<month>7</month>
<year>2014</year>
</date>
<date date-type="accepted"><day>6</day>
<month>3</month>
<year>2015</year>
</date>
</history>
<permissions><copyright-statement>© Coqueiro et al.; licensee BioMed Central. 2015</copyright-statement>
<license license-type="open-access"><license-p>This is an Open Access article distributed under the terms of the Creative Commons Attribution License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0">http://creativecommons.org/licenses/by/4.0</ext-link>
), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/publicdomain/zero/1.0/">http://creativecommons.org/publicdomain/zero/1.0/</ext-link>
) applies to the data made available in this article, unless otherwise stated.</license-p>
</license>
</permissions>
<abstract id="Abs1"><sec><title>Background</title>
<p>Resistance inducers have been used in annual crops as an alternative for disease control. Wood perennial fruit trees, such as those of the citrus species, are candidates for treatment with resistance inducers, such as salicylic acid (SA) and chitosan (CHI). However, the involved mechanisms in resistance induced by elicitors in citrus are currently few known.</p>
</sec>
<sec><title>Results</title>
<p>In the present manuscript, we report information regarding the transcriptional changes observed in sweet orange in response to exogenous applications of SA and CHI using RNA-seq technology. More genes were induced by SA treatment than by CHI treatment. In total, 1,425 differentially expressed genes (DEGs) were identified following treatment with SA, including the important genes <italic>WRKY5</italic>
0, <italic>PR2,</italic>
and <italic>PR9</italic>
, which are known to participate in the salicylic acid signaling pathway, and genes involved in ethylene/Jasmonic acid biosynthesis (<italic>ACS1</italic>
2, <italic>AP2</italic>
domain-containing transcription factor, and <italic>OPR3</italic>
). In addition, SA treatment promoted the induction of a subset of genes involved in several metabolic processes, such as redox states and secondary metabolism, which are associated with biotic stress. For CHI treatment, there were 640 DEGs, many of them involved in secondary metabolism. For both SA and CHI treatments, the auxin pathway genes were repressed, but SA treatment promoted induction in the ethylene and jasmonate acid pathway genes, in addition to repressing the abscisic acid pathway genes. Chitosan treatment altered some hormone metabolism pathways. The DEGs were validated by quantitative Real-Time PCR (qRT-PCR), and the results were consistent with the RNA-seq data, with a high correlation between the two analyses.</p>
</sec>
<sec><title>Conclusions</title>
<p>We expanded the available information regarding induced defense by elicitors in a species of <italic>Citrus</italic>
that is susceptible to various diseases and identified the molecular mechanisms by which this defense might be mediated.</p>
</sec>
<sec><title>Electronic supplementary material</title>
<p>The online version of this article (doi:10.1186/s12864-015-1440-5) contains supplementary material, which is available to authorized users.</p>
</sec>
</abstract>
<kwd-group xml:lang="en"><title>Keywords</title>
<kwd>Citrus</kwd>
<kwd>Gene expression</kwd>
<kwd>Metabolic pathway</kwd>
<kwd>RNA-seq</kwd>
</kwd-group>
<custom-meta-group><custom-meta><meta-name>issue-copyright-statement</meta-name>
<meta-value>© The Author(s) 2015</meta-value>
</custom-meta>
</custom-meta-group>
</article-meta>
</front>
</pmc>
</record>
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