Copy number variation of a gene cluster encoding endopolygalacturonase mediates flesh texture and stone adhesion in peach
Identifieur interne : 000352 ( Pmc/Curation ); précédent : 000351; suivant : 000353Copy number variation of a gene cluster encoding endopolygalacturonase mediates flesh texture and stone adhesion in peach
Auteurs : Chao Gu [République populaire de Chine] ; Lu Wang [République populaire de Chine] ; Wei Wang [République populaire de Chine] ; Hui Zhou [République populaire de Chine] ; Baiquan Ma [République populaire de Chine] ; Hongyu Zheng [République populaire de Chine] ; Ting Fang [République populaire de Chine] ; Collins Ogutu [République populaire de Chine] ; Sornkanok Vimolmangkang [République populaire de Chine, Thaïlande] ; Yuepeng Han [République populaire de Chine]Source :
- Journal of Experimental Botany [ 0022-0957 ] ; 2016.
Abstract
Copy number variation at the
Url:
DOI: 10.1093/jxb/erw021
PubMed: 26850878
PubMed Central: 4783375
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<front><div type="abstract" xml:lang="en"><title>Highlight</title>
<p>Copy number variation at the <italic>F-M</italic>
locus plays a driving role in flesh texture diversification in peach.</p>
</div>
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<pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">J Exp Bot</journal-id>
<journal-id journal-id-type="iso-abbrev">J. Exp. Bot</journal-id>
<journal-id journal-id-type="hwp">jexbot</journal-id>
<journal-id journal-id-type="publisher-id">exbotj</journal-id>
<journal-title-group><journal-title>Journal of Experimental Botany</journal-title>
</journal-title-group>
<issn pub-type="ppub">0022-0957</issn>
<issn pub-type="epub">1460-2431</issn>
<publisher><publisher-name>Oxford University Press</publisher-name>
<publisher-loc>UK</publisher-loc>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">26850878</article-id>
<article-id pub-id-type="pmc">4783375</article-id>
<article-id pub-id-type="doi">10.1093/jxb/erw021</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Research Paper</subject>
</subj-group>
</article-categories>
<title-group><article-title>Copy number variation of a gene cluster encoding endopolygalacturonase mediates flesh texture and stone adhesion in peach</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Gu</surname>
<given-names>Chao</given-names>
</name>
<xref ref-type="aff" rid="AF0001"><sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Wang</surname>
<given-names>Lu</given-names>
</name>
<xref ref-type="aff" rid="AF0001"><sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Wang</surname>
<given-names>Wei</given-names>
</name>
<xref ref-type="aff" rid="AF0001"><sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Zhou</surname>
<given-names>Hui</given-names>
</name>
<xref ref-type="aff" rid="AF0001"><sup>1</sup>
</xref>
<xref ref-type="aff" rid="AF0002"><sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Ma</surname>
<given-names>Baiquan</given-names>
</name>
<xref ref-type="aff" rid="AF0001"><sup>1</sup>
</xref>
<xref ref-type="aff" rid="AF0002"><sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Zheng</surname>
<given-names>Hongyu</given-names>
</name>
<xref ref-type="aff" rid="AF0001"><sup>1</sup>
</xref>
<xref ref-type="aff" rid="AF0002"><sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Fang</surname>
<given-names>Ting</given-names>
</name>
<xref ref-type="aff" rid="AF0001"><sup>1</sup>
</xref>
<xref ref-type="aff" rid="AF0002"><sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Ogutu</surname>
<given-names>Collins</given-names>
</name>
<xref ref-type="aff" rid="AF0001"><sup>1</sup>
</xref>
<xref ref-type="aff" rid="AF0002"><sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Vimolmangkang</surname>
<given-names>Sornkanok</given-names>
</name>
<xref ref-type="aff" rid="AF0001"><sup>1</sup>
</xref>
<xref ref-type="aff" rid="AF0003"><sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Han</surname>
<given-names>Yuepeng</given-names>
</name>
<xref ref-type="aff" rid="AF0001"><sup>1</sup>
</xref>
<xref ref-type="aff" rid="AF0004"><sup>4</sup>
</xref>
<xref ref-type="corresp" rid="c1">*</xref>
</contrib>
<aff id="AF0001"><sup>1</sup>
<institution>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Sino-African Joint Research Center, Wuhan Botanical Garden of the Chinese Academy of Sciences</institution>
,<addr-line>Wuhan 430074</addr-line>
,<country>China</country>
</aff>
<aff id="AF0002"><sup>2</sup>
<institution>Graduate University of Chinese Academy of Sciences</institution>
,<addr-line>19A Yuquanlu, Beijing 100049</addr-line>
,<country>China</country>
</aff>
<aff id="AF0003"><sup>3</sup>
<institution>Department of Pharmacognosy and Pharmaceutical Botany, Faculty of Pharmaceutical Sciences, Chulalongkorn University</institution>
,<addr-line>Bangkok 10330</addr-line>
,<country>Thailand</country>
</aff>
<aff id="AF0004"><sup>4</sup>
<institution>College of Horticulture Science and Engineering, Shandong Agricultural University</institution>
,<addr-line>Tai-An, Shandong 271018</addr-line>
,<country>China</country>
</aff>
</contrib-group>
<author-notes><corresp id="c1">* To whom correspondence should be addressed. E-mail: <email>yphan@wbgcas.cn</email>
</corresp>
<fn id="fn-100"><p>Editor: Gerhard Leubner, Royal Holloway, University of London</p>
</fn>
</author-notes>
<pub-date pub-type="ppub"><month>4</month>
<year>2016</year>
</pub-date>
<pub-date pub-type="epub"><day>5</day>
<month>2</month>
<year>2016</year>
</pub-date>
<pub-date pub-type="pmc-release"><day>5</day>
<month>2</month>
<year>2016</year>
</pub-date>
<pmc-comment> PMC Release delay is 0 months and 0 days and was based on the
. </pmc-comment>
<volume>67</volume>
<issue>6</issue>
<fpage>1993</fpage>
<lpage>2005</lpage>
<permissions><copyright-statement>© The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.</copyright-statement>
<copyright-year>2016</copyright-year>
<license license-type="creative-commons" xlink:href="http://creativecommons.org/licenses/by/3.0"><license-p>This is an Open Access article distributed under the terms of the Creative Commons Attribution License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link>
), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
</license>
</permissions>
<abstract abstract-type="precis"><title>Highlight</title>
<p>Copy number variation at the <italic>F-M</italic>
locus plays a driving role in flesh texture diversification in peach.</p>
</abstract>
<abstract><p>Texture is an important attribute affecting consumer perception of fruit quality. Peach melting flesh and flesh adhesion to stone (endocarp) are simply inherited and controlled by the <italic>F-M</italic>
locus on linkage group (LG) 4. Here, we report that two genes encoding endopolygalacturonase (endoPG) in the <italic>F-M</italic>
locus, designated <italic>PpendoPGF</italic>
and <italic>PpendoPGM</italic>
, are associated with the melting flesh and stone adhesion traits. <italic>PpendoPGM</italic>
controls melting flesh while <italic>PpendoPGF</italic>
has pleiotropic effects on both melting flesh and stone adhesion. The <italic>F-M</italic>
locus has three allelic copy number variants of <italic>endoPG</italic>
, H<sub>1</sub>
(<italic>PpendoPGF</italic>
and <italic>PpendoPGM</italic>
), H<sub>2</sub>
(<italic>PpendoPGM</italic>
), and H<sub>3</sub>
(null). The H<sub>2</sub>
haplotype represents the ancestral one while the H<sub>1</sub>
and H<sub>3</sub>
haplotypes are two variants due to duplication and deletion of <italic>PpendoPGM</italic>
, respectively. Accessions with H<sub>1</sub>
H<sub>1</sub>
, H<sub>1</sub>
H<sub>2</sub>
, or H<sub>1</sub>
H<sub>3</sub>
genotypes show the freestone or semi-freestone and melting flesh phenotype, while both H<sub>2</sub>
H<sub>2</sub>
and H<sub>2</sub>
H<sub>3</sub>
accessions have the clingstone and melting flesh phenotype. The H<sub>3</sub>
H<sub>3</sub>
accessions have the clingstone and non-melting flesh phenotype. Our study not only demonstrates a driving role of gene copy number variations in flesh texture diversification in fruit trees, but also provides a useful diagnostic tool for early seedling selection in peach breeding programmes.</p>
</abstract>
<kwd-group><title>Key words:</title>
<kwd>Copy number variation</kwd>
<kwd>flesh texture</kwd>
<kwd>melting flesh</kwd>
<kwd>peach</kwd>
<kwd>polygalacturonase</kwd>
<kwd>stone adhesion.</kwd>
</kwd-group>
<counts><page-count count="13"></page-count>
</counts>
</article-meta>
</front>
</pmc>
</record>
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