MicroRNA Regulatory Mechanisms on Citrus sinensis leaves to Magnesium-Deficiency
Identifieur interne : 000309 ( Pmc/Curation ); précédent : 000308; suivant : 000310MicroRNA Regulatory Mechanisms on Citrus sinensis leaves to Magnesium-Deficiency
Auteurs : Cui-Lan Ma [République populaire de Chine] ; Yi-Ping Qi [République populaire de Chine] ; Wei-Wei Liang [République populaire de Chine] ; Lin-Tong Yang [République populaire de Chine] ; Yi-Bin Lu [République populaire de Chine] ; Peng Guo [République populaire de Chine] ; Xin Ye [République populaire de Chine] ; Li-Song Chen [République populaire de Chine]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2016.
Abstract
Magnesium (Mg)-deficiency, which affects crop productivity and quality, widespreadly exists in many agricultural crops, including citrus. However, very limited data are available on Mg-deficiency-responsive microRNAs (miRNAs) in higher plants. Using Illumina sequencing, we isolated 75 (73 known and 2 novel) up- and 71 (64 known and 7 novel) down-regulated miRNAs from Mg-deficient
Url:
DOI: 10.3389/fpls.2016.00201
PubMed: 26973661
PubMed Central: 4778066
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Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Yang, Lin Tong" sort="Yang, Lin Tong" uniqKey="Yang L" first="Lin-Tong" last="Yang">Lin-Tong Yang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Institute of Plant Nutritional Physiology and Molecular Biology, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff5"><institution>College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Lu, Yi Bin" sort="Lu, Yi Bin" uniqKey="Lu Y" first="Yi-Bin" last="Lu">Yi-Bin Lu</name><affiliation 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Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Chen, Li Song" sort="Chen, Li Song" uniqKey="Chen L" first="Li-Song" last="Chen">Li-Song Chen</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Institute of Plant Nutritional Physiology and Molecular Biology, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff5"><institution>College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff6"><institution>The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff7"><institution>Fujian Key Laboratory for Plant Molecular and Cell Biology, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Magnesium (Mg)-deficiency, which affects crop productivity and quality, widespreadly exists in many agricultural crops, including citrus. However, very limited data are available on Mg-deficiency-responsive microRNAs (miRNAs) in higher plants. Using Illumina sequencing, we isolated 75 (73 known and 2 novel) up- and 71 (64 known and 7 novel) down-regulated miRNAs from Mg-deficient <italic>Citrus sinensis</italic> leaves. In addition to the remarkable metabolic flexibility as indicated by the great alteration of <italic>miRNA</italic> expression, the adaptive responses of leaf miRNAs to Mg-deficiency might also involve the following several aspects: (<italic>a</italic>) up-regulating stress-related genes by down-regulating <italic>miR164, miR7812, miR5742, miR3946</italic>, and <italic>miR5158</italic>; (<italic>b</italic>) enhancing cell transport due to decreased expression of <italic>miR3946</italic> and <italic>miR5158</italic> and increased expression of <italic>miR395, miR1077, miR1160</italic>, and <italic>miR8019</italic>; (<italic>c</italic>) activating lipid metabolism-related genes by repressing <italic>miR158, miR5256</italic>, and <italic>miR3946</italic>; (<italic>d</italic>) inducing cell wall-related gene <italic>expansin 8A</italic> by repressing <italic>miR779</italic>; and (<italic>e</italic>) down-regulating the expression of genes involved in the maintenance of S, K and Cu by up-regulating <italic>miR395</italic> and <italic>miR6426</italic>. To conclude, we isolated some new known miRNAs (i.e., miR7812, miR8019, miR6218, miR1533, miR6426, miR5256, miR5742, miR5561, miR5158, and miR5818) responsive to nutrient deficiencies and found some candidate miRNAs that might contribute to Mg-deficiency tolerance. Therefore, our results not only provide novel information about the responses of plant to Mg-deficiency, but also are useful for obtaining the key miRNAs for plant Mg-deficiency tolerance.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Abdel Ghany, S E" uniqKey="Abdel Ghany S">S. E. Abdel-Ghany</name></author><author><name sortKey="Pilon, M" uniqKey="Pilon M">M. Pilon</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Allen, E" uniqKey="Allen E">E. Allen</name></author><author><name sortKey="Xie, Z" uniqKey="Xie Z">Z. Xie</name></author><author><name sortKey="Gustafson, A M" uniqKey="Gustafson A">A. M. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Front Plant Sci</journal-id><journal-id journal-id-type="iso-abbrev">Front Plant Sci</journal-id><journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id><journal-title-group><journal-title>Frontiers in Plant Science</journal-title></journal-title-group><issn pub-type="epub">1664-462X</issn><publisher><publisher-name>Frontiers Media S.A.</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">26973661</article-id><article-id pub-id-type="pmc">4778066</article-id><article-id pub-id-type="doi">10.3389/fpls.2016.00201</article-id><article-categories><subj-group subj-group-type="heading"><subject>Plant Science</subject><subj-group><subject>Original Research</subject></subj-group></subj-group></article-categories><title-group><article-title>MicroRNA Regulatory Mechanisms on <italic>Citrus sinensis</italic> leaves to Magnesium-Deficiency</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Ma</surname><given-names>Cui-Lan</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff2"><sup>2</sup></xref><xref ref-type="aff" rid="aff3"><sup>3</sup></xref></contrib><contrib contrib-type="author"><name><surname>Qi</surname><given-names>Yi-Ping</given-names></name><xref ref-type="aff" rid="aff4"><sup>4</sup></xref></contrib><contrib contrib-type="author"><name><surname>Liang</surname><given-names>Wei-Wei</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff5"><sup>5</sup></xref></contrib><contrib contrib-type="author"><name><surname>Yang</surname><given-names>Lin-Tong</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff5"><sup>5</sup></xref></contrib><contrib contrib-type="author"><name><surname>Lu</surname><given-names>Yi-Bin</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff5"><sup>5</sup></xref></contrib><contrib contrib-type="author"><name><surname>Guo</surname><given-names>Peng</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff5"><sup>5</sup></xref><uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/256316/overview"></uri></contrib><contrib contrib-type="author"><name><surname>Ye</surname><given-names>Xin</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff5"><sup>5</sup></xref><uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/257288/overview"></uri></contrib><contrib contrib-type="author"><name><surname>Chen</surname><given-names>Li-Song</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff5"><sup>5</sup></xref><xref ref-type="aff" rid="aff6"><sup>6</sup></xref><xref ref-type="aff" rid="aff7"><sup>7</sup></xref><xref ref-type="author-notes" rid="fn001"><sup>*</sup></xref><uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/229328/overview"></uri></contrib></contrib-group><aff id="aff1"><sup>1</sup><institution>Institute of Plant Nutritional Physiology and Molecular Biology, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></aff><aff id="aff2"><sup>2</sup><institution>College of Life Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></aff><aff id="aff3"><sup>3</sup><institution>College of Horticulture, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></aff><aff id="aff4"><sup>4</sup><institution>Institute of Materia Medica, Fujian Academy of Medical Sciences</institution><country>Fuzhou, China</country></aff><aff id="aff5"><sup>5</sup><institution>College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></aff><aff id="aff6"><sup>6</sup><institution>The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></aff><aff id="aff7"><sup>7</sup><institution>Fujian Key Laboratory for Plant Molecular and Cell Biology, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></aff><author-notes><fn fn-type="edited-by"><p>Edited by: Anna Maria Mastrangelo, Centro di Ricerca per la Cerealicoltura, Italy</p></fn><fn fn-type="edited-by"><p>Reviewed by: Lijun Chai, Huazhong Agricultural University, China; Wen-Wu Guo, Huazhong Agricultural University, China</p></fn><corresp id="fn001">*Correspondence: Li-Song Chen <email xlink:type="simple">lisongchen2002@hotmail.com</email></corresp><fn fn-type="other" id="fn002"><p>This article was submitted to Crop Science and Horticulture, a section of the journal Frontiers in Plant Science</p></fn></author-notes><pub-date pub-type="epub"><day>04</day><month>3</month><year>2016</year></pub-date><pub-date pub-type="collection"><year>2016</year></pub-date><volume>7</volume><elocation-id>201</elocation-id><history><date date-type="received"><day>25</day><month>9</month><year>2015</year></date><date date-type="accepted"><day>05</day><month>2</month><year>2016</year></date></history><permissions><copyright-statement>Copyright © 2016 Ma, Qi, Liang, Yang, Lu, Guo, Ye and Chen.</copyright-statement><copyright-year>2016</copyright-year><copyright-holder>Ma, Qi, Liang, Yang, Lu, Guo, Ye and Chen</copyright-holder><license xlink:href="http://creativecommons.org/licenses/by/4.0/"><license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</license-p></license></permissions><abstract><p>Magnesium (Mg)-deficiency, which affects crop productivity and quality, widespreadly exists in many agricultural crops, including citrus. However, very limited data are available on Mg-deficiency-responsive microRNAs (miRNAs) in higher plants. Using Illumina sequencing, we isolated 75 (73 known and 2 novel) up- and 71 (64 known and 7 novel) down-regulated miRNAs from Mg-deficient <italic>Citrus sinensis</italic> leaves. In addition to the remarkable metabolic flexibility as indicated by the great alteration of <italic>miRNA</italic> expression, the adaptive responses of leaf miRNAs to Mg-deficiency might also involve the following several aspects: (<italic>a</italic>) up-regulating stress-related genes by down-regulating <italic>miR164, miR7812, miR5742, miR3946</italic>, and <italic>miR5158</italic>; (<italic>b</italic>) enhancing cell transport due to decreased expression of <italic>miR3946</italic> and <italic>miR5158</italic> and increased expression of <italic>miR395, miR1077, miR1160</italic>, and <italic>miR8019</italic>; (<italic>c</italic>) activating lipid metabolism-related genes by repressing <italic>miR158, miR5256</italic>, and <italic>miR3946</italic>; (<italic>d</italic>) inducing cell wall-related gene <italic>expansin 8A</italic> by repressing <italic>miR779</italic>; and (<italic>e</italic>) down-regulating the expression of genes involved in the maintenance of S, K and Cu by up-regulating <italic>miR395</italic> and <italic>miR6426</italic>. To conclude, we isolated some new known miRNAs (i.e., miR7812, miR8019, miR6218, miR1533, miR6426, miR5256, miR5742, miR5561, miR5158, and miR5818) responsive to nutrient deficiencies and found some candidate miRNAs that might contribute to Mg-deficiency tolerance. Therefore, our results not only provide novel information about the responses of plant to Mg-deficiency, but also are useful for obtaining the key miRNAs for plant Mg-deficiency tolerance.</p></abstract><kwd-group><kwd>Mg-deficiency</kwd><kwd><italic>Citrus sinensis</italic></kwd><kwd>Illumina sequencing</kwd><kwd>leaves</kwd><kwd>microRNA</kwd></kwd-group><funding-group><award-group><funding-source id="cn001">The earmarked fund for China Agriculture Research System</funding-source><award-id rid="cn001">No. CARS-27</award-id></award-group></funding-group><counts><fig-count count="4"></fig-count><table-count count="2"></table-count><equation-count count="1"></equation-count><ref-count count="81"></ref-count><page-count count="16"></page-count><word-count count="10401"></word-count></counts></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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