Genome-Wide Identification of the Invertase Gene Family in Populus
Identifieur interne : 000190 ( Pmc/Curation ); précédent : 000189; suivant : 000191Genome-Wide Identification of the Invertase Gene Family in Populus
Auteurs : Zhong Chen [République populaire de Chine] ; Kai Gao [République populaire de Chine] ; Xiaoxing Su [République populaire de Chine] ; Pian Rao [République populaire de Chine] ; Xinmin An [République populaire de Chine]Source :
- PLoS ONE [ 1932-6203 ] ; 2015.
Abstract
Invertase plays a crucial role in carbohydrate partitioning and plant development as it catalyses the irreversible hydrolysis of sucrose into glucose and fructose. The invertase family in plants is composed of two sub-families: acid invertases, which are targeted to the cell wall and vacuole; and neutral/alkaline invertases, which function in the cytosol. In this study, 5 cell wall invertase genes (
Url:
DOI: 10.1371/journal.pone.0138540
PubMed: 26393355
PubMed Central: 4579127
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome-Wide Identification of the Invertase Gene Family in <italic>Populus</italic></title><author><name sortKey="Chen, Zhong" sort="Chen, Zhong" uniqKey="Chen Z" first="Zhong" last="Chen">Zhong Chen</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing</wicri:regionArea></affiliation></author><author><name sortKey="Gao, Kai" sort="Gao, Kai" uniqKey="Gao K" first="Kai" last="Gao">Kai Gao</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing</wicri:regionArea></affiliation></author><author><name sortKey="Su, Xiaoxing" sort="Su, Xiaoxing" uniqKey="Su X" first="Xiaoxing" last="Su">Xiaoxing Su</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Beijing Berry Genomics Company Limited, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Berry Genomics Company Limited, Beijing</wicri:regionArea></affiliation></author><author><name sortKey="Rao, Pian" sort="Rao, Pian" uniqKey="Rao P" first="Pian" last="Rao">Pian Rao</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing</wicri:regionArea></affiliation></author><author><name sortKey="An, Xinmin" sort="An, Xinmin" uniqKey="An X" first="Xinmin" last="An">Xinmin An</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26393355</idno><idno type="pmc">4579127</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4579127</idno><idno type="RBID">PMC:4579127</idno><idno type="doi">10.1371/journal.pone.0138540</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000190</idno><idno type="wicri:Area/Pmc/Curation">000190</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genome-Wide Identification of the Invertase Gene Family in <italic>Populus</italic></title><author><name sortKey="Chen, Zhong" sort="Chen, Zhong" uniqKey="Chen Z" first="Zhong" last="Chen">Zhong Chen</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing</wicri:regionArea></affiliation></author><author><name sortKey="Gao, Kai" sort="Gao, Kai" uniqKey="Gao K" first="Kai" last="Gao">Kai Gao</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing</wicri:regionArea></affiliation></author><author><name sortKey="Su, Xiaoxing" sort="Su, Xiaoxing" uniqKey="Su X" first="Xiaoxing" last="Su">Xiaoxing Su</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Beijing Berry Genomics Company Limited, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Beijing Berry Genomics Company Limited, Beijing</wicri:regionArea></affiliation></author><author><name sortKey="Rao, Pian" sort="Rao, Pian" uniqKey="Rao P" first="Pian" last="Rao">Pian Rao</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing</wicri:regionArea></affiliation></author><author><name sortKey="An, Xinmin" sort="An, Xinmin" uniqKey="An X" first="Xinmin" last="An">Xinmin An</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing</wicri:regionArea></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Invertase plays a crucial role in carbohydrate partitioning and plant development as it catalyses the irreversible hydrolysis of sucrose into glucose and fructose. The invertase family in plants is composed of two sub-families: acid invertases, which are targeted to the cell wall and vacuole; and neutral/alkaline invertases, which function in the cytosol. In this study, 5 cell wall invertase genes (<italic>PtCWINV1</italic>-<italic>5</italic>), 3 vacuolar invertase genes (<italic>PtVINV1</italic>-<italic>3</italic>) and 16 neutral/alkaline invertase genes (<italic>PtNINV1</italic>-<italic>16</italic>) were identified in the <italic>Populus</italic> genome and found to be distributed on 14 chromosomes. A comprehensive analysis of poplar invertase genes was performed, including structures, chromosome location, phylogeny, evolutionary pattern and expression profiles. Phylogenetic analysis indicated that the two sub-families were both divided into two clades. Segmental duplication is contributed to neutral/alkaline sub-family expansion. Furthermore, the <italic>Populus</italic> invertase genes displayed differential expression in roots, stems, leaves, leaf buds and in response to salt/cold stress and pathogen infection. In addition, the analysis of enzyme activity and sugar content revealed that invertase genes play key roles in the sucrose metabolism of various tissues and organs in poplar. This work lays the foundation for future functional analysis of the invertase genes in <italic>Populus</italic> and other woody perennials.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Roitsch, T" uniqKey="Roitsch T">T Roitsch</name></author><author><name sortKey="Gonzalez, Mc" uniqKey="Gonzalez M">MC Gonzalez</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sturm, A" uniqKey="Sturm A">A Sturm</name></author><author><name sortKey="Tang, Gq" uniqKey="Tang G">GQ Tang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sturm, A" uniqKey="Sturm A">A Sturm</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Haouazine Takvorian, N" uniqKey="Haouazine Takvorian N">N Haouazine-Takvorian</name></author><author><name sortKey="Tymowska Lalanne, Z" uniqKey="Tymowska Lalanne Z">Z Tymowska-Lalanne</name></author><author><name 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<front><journal-meta><journal-id journal-id-type="nlm-ta">PLoS One</journal-id><journal-id journal-id-type="iso-abbrev">PLoS ONE</journal-id><journal-id journal-id-type="publisher-id">plos</journal-id><journal-id journal-id-type="pmc">plosone</journal-id><journal-title-group><journal-title>PLoS ONE</journal-title></journal-title-group><issn pub-type="epub">1932-6203</issn><publisher><publisher-name>Public Library of Science</publisher-name><publisher-loc>San Francisco, CA USA</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">26393355</article-id><article-id pub-id-type="pmc">4579127</article-id><article-id pub-id-type="doi">10.1371/journal.pone.0138540</article-id><article-id pub-id-type="publisher-id">PONE-D-15-24337</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group></article-categories><title-group><article-title>Genome-Wide Identification of the Invertase Gene Family in <italic>Populus</italic></article-title><alt-title alt-title-type="running-head">Invertase Gene Family in <italic>Populus</italic></alt-title></title-group><contrib-group><contrib contrib-type="author" equal-contrib="yes"><name><surname>Chen</surname><given-names>Zhong</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref><xref ref-type="aff" rid="aff002"><sup>2</sup></xref></contrib><contrib contrib-type="author" equal-contrib="yes"><name><surname>Gao</surname><given-names>Kai</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref><xref ref-type="aff" rid="aff002"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Su</surname><given-names>Xiaoxing</given-names></name><xref ref-type="aff" rid="aff003"><sup>3</sup></xref></contrib><contrib contrib-type="author"><name><surname>Rao</surname><given-names>Pian</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref><xref ref-type="aff" rid="aff002"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>An</surname><given-names>Xinmin</given-names></name><xref ref-type="aff" rid="aff001"><sup>1</sup></xref><xref ref-type="aff" rid="aff002"><sup>2</sup></xref><xref rid="cor001" ref-type="corresp">*</xref></contrib></contrib-group><aff id="aff001"><label>1</label><addr-line>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China</addr-line></aff><aff id="aff002"><label>2</label><addr-line>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China</addr-line></aff><aff id="aff003"><label>3</label><addr-line>Beijing Berry Genomics Company Limited, Beijing, China</addr-line></aff><contrib-group><contrib contrib-type="editor"><name><surname>Xu</surname><given-names>Changjie</given-names></name><role>Editor</role><xref ref-type="aff" rid="edit1"></xref></contrib></contrib-group><aff id="edit1"><addr-line>Zhejiang University, CHINA</addr-line></aff><author-notes><fn fn-type="conflict" id="coi001"><p><bold>Competing Interests: </bold>XS is an employee of Beijing Berry Genomics Company Limited, a funder of this study. There are no patents, products in development or marketed products to declare. This does not alter the authors' adherence to all PLOS ONE policies on sharing data and materials.</p></fn><fn fn-type="con" id="contrib001"><p>Conceived and designed the experiments: ZC XA. Performed the experiments: ZC PR KG. Analyzed the data: ZC XS PR. Contributed reagents/materials/analysis tools: ZC XS PR KG. Wrote the paper: ZC.</p></fn><corresp id="cor001">* E-mail: <email>anxinmin@bjfu.edu.cn</email></corresp></author-notes><pub-date pub-type="epub"><day>22</day><month>9</month><year>2015</year></pub-date><pub-date pub-type="collection"><year>2015</year></pub-date><volume>10</volume><issue>9</issue><elocation-id>e0138540</elocation-id><history><date date-type="received"><day>12</day><month>7</month><year>2015</year></date><date date-type="accepted"><day>31</day><month>8</month><year>2015</year></date></history><permissions><copyright-year>2015</copyright-year><copyright-holder>Chen et al</copyright-holder><license xlink:href="http://creativecommons.org/licenses/by/4.0/"><license-p>This is an open access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License</ext-link>, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited</license-p></license></permissions><self-uri content-type="pdf" xlink:type="simple" xlink:href="pone.0138540.pdf"></self-uri><abstract><p>Invertase plays a crucial role in carbohydrate partitioning and plant development as it catalyses the irreversible hydrolysis of sucrose into glucose and fructose. The invertase family in plants is composed of two sub-families: acid invertases, which are targeted to the cell wall and vacuole; and neutral/alkaline invertases, which function in the cytosol. In this study, 5 cell wall invertase genes (<italic>PtCWINV1</italic>-<italic>5</italic>), 3 vacuolar invertase genes (<italic>PtVINV1</italic>-<italic>3</italic>) and 16 neutral/alkaline invertase genes (<italic>PtNINV1</italic>-<italic>16</italic>) were identified in the <italic>Populus</italic> genome and found to be distributed on 14 chromosomes. A comprehensive analysis of poplar invertase genes was performed, including structures, chromosome location, phylogeny, evolutionary pattern and expression profiles. Phylogenetic analysis indicated that the two sub-families were both divided into two clades. Segmental duplication is contributed to neutral/alkaline sub-family expansion. Furthermore, the <italic>Populus</italic> invertase genes displayed differential expression in roots, stems, leaves, leaf buds and in response to salt/cold stress and pathogen infection. In addition, the analysis of enzyme activity and sugar content revealed that invertase genes play key roles in the sucrose metabolism of various tissues and organs in poplar. This work lays the foundation for future functional analysis of the invertase genes in <italic>Populus</italic> and other woody perennials.</p></abstract><funding-group><funding-statement>This work was supported by the Major State Basic Research Development Program of China (2012CB114505), the Fundamental Research Funds for the Central Universities (BLYJ201410), the Project of National Natural Science Foundation of China (31170631 and J1103516), and the National High Technology Research and Development Program of China (2013AA102703 and 2011AA100201). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. XS is an employee of Beijing Berry Genomics Company Limited. The funder provided support in the form of salary for XS, but did not have any additional role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript. The specific roles of these authors are articulated in the 'author contributions' section.</funding-statement></funding-group><counts><fig-count count="9"></fig-count><table-count count="2"></table-count><page-count count="21"></page-count></counts><custom-meta-group><custom-meta id="data-availability"><meta-name>Data Availability</meta-name><meta-value>All relevant data are within the paper.</meta-value></custom-meta></custom-meta-group></article-meta><notes><title>Data Availability</title><p>All relevant data are within the paper.</p></notes></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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