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Dormancy-associated MADS-box genes and microRNAs jointly control dormancy transition in pear (Pyrus pyrifolia white pear group) flower bud

Identifieur interne : 000114 ( Pmc/Curation ); précédent : 000113; suivant : 000115

Dormancy-associated MADS-box genes and microRNAs jointly control dormancy transition in pear (Pyrus pyrifolia white pear group) flower bud

Auteurs : Qingfeng Niu [République populaire de Chine] ; Jianzhao Li [République populaire de Chine] ; Danying Cai [République populaire de Chine] ; Minjie Qian [République populaire de Chine] ; Huimin Jia [République populaire de Chine] ; Songling Bai [République populaire de Chine] ; Sayed Hussain [République populaire de Chine] ; Guoqin Liu [République populaire de Chine] ; Yuanwen Teng [République populaire de Chine] ; Xiaoyan Zheng [République populaire de Chine]

Source :

RBID : PMC:4682432

Abstract

Highlight

Short-term chilling in autumn activates the accumulation of CBF, which directly promotes DAM expression. DAMs subsequently inhibit FT2 expression to induce endo-dormancy; miR6390 might degrade DAM genes to release endo-dormancy.


Url:
DOI: 10.1093/jxb/erv454
PubMed: 26466664
PubMed Central: 4682432

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PMC:4682432

Le document en format XML

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<name sortKey="Niu, Qingfeng" sort="Niu, Qingfeng" uniqKey="Niu Q" first="Qingfeng" last="Niu">Qingfeng Niu</name>
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<country xml:lang="fr">République populaire de Chine</country>
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<country>China</country>
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<country xml:lang="fr">République populaire de Chine</country>
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<country xml:lang="fr">République populaire de Chine</country>
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<country xml:lang="fr">République populaire de Chine</country>
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<country xml:lang="fr">République populaire de Chine</country>
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<country xml:lang="fr">République populaire de Chine</country>
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<country xml:lang="fr">République populaire de Chine</country>
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<country xml:lang="fr">République populaire de Chine</country>
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<country xml:lang="fr">République populaire de Chine</country>
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<title xml:lang="en" level="a" type="main">Dormancy-associated MADS-box genes and microRNAs jointly control dormancy transition in pear (
<italic>Pyrus pyrifolia</italic>
white pear group) flower bud</title>
<author>
<name sortKey="Niu, Qingfeng" sort="Niu, Qingfeng" uniqKey="Niu Q" first="Qingfeng" last="Niu">Qingfeng Niu</name>
<affiliation wicri:level="1">
<nlm:aff id="AF0001">
<institution>Department of Horticulture, Zhejiang University</institution>
,
<addr-line>Hangzhou, Zhejiang 310058</addr-line>
,
<country>China</country>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="AF0002">
<institution>The Key Laboratory of Horticultural Plant Growth, Development and Quality Improvement, the Ministry of Agriculture of China</institution>
,
<addr-line>Hangzhou, Zhejiang 310058</addr-line>
,
<country>China</country>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="AF0003">
<institution>Zhejiang Provincial Key Laboratory of Integrative Biology and Utilization of Horticultural Plants</institution>
,
<addr-line>Hangzhou, Zhejiang 310058</addr-line>
,
<country>China</country>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Li, Jianzhao" sort="Li, Jianzhao" uniqKey="Li J" first="Jianzhao" last="Li">Jianzhao Li</name>
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<nlm:aff id="AF0001">
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<addr-line>Hangzhou, Zhejiang 310058</addr-line>
,
<country>China</country>
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<country xml:lang="fr">République populaire de Chine</country>
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,
<addr-line>Hangzhou, Zhejiang 310058</addr-line>
,
<country>China</country>
</nlm:aff>
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<country>China</country>
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<country xml:lang="fr">République populaire de Chine</country>
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,
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,
<country>China</country>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
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,
<country>China</country>
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<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="AF0002">
<institution>The Key Laboratory of Horticultural Plant Growth, Development and Quality Improvement, the Ministry of Agriculture of China</institution>
,
<addr-line>Hangzhou, Zhejiang 310058</addr-line>
,
<country>China</country>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="AF0003">
<institution>Zhejiang Provincial Key Laboratory of Integrative Biology and Utilization of Horticultural Plants</institution>
,
<addr-line>Hangzhou, Zhejiang 310058</addr-line>
,
<country>China</country>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<name sortKey="Hussain, Sayed" sort="Hussain, Sayed" uniqKey="Hussain S" first="Sayed" last="Hussain">Sayed Hussain</name>
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<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<affiliation wicri:level="1">
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,
<addr-line>Hangzhou, Zhejiang 310058</addr-line>
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<country>China</country>
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<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Liu, Guoqin" sort="Liu, Guoqin" uniqKey="Liu G" first="Guoqin" last="Liu">Guoqin Liu</name>
<affiliation wicri:level="1">
<nlm:aff id="AF0005">
<institution>College of Agriculture, Guizhou University</institution>
,
<addr-line>Guiyang, Guizhou Province 550025</addr-line>
,
<country>China</country>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Teng, Yuanwen" sort="Teng, Yuanwen" uniqKey="Teng Y" first="Yuanwen" last="Teng">Yuanwen Teng</name>
<affiliation wicri:level="1">
<nlm:aff id="AF0001">
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,
<addr-line>Hangzhou, Zhejiang 310058</addr-line>
,
<country>China</country>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="AF0002">
<institution>The Key Laboratory of Horticultural Plant Growth, Development and Quality Improvement, the Ministry of Agriculture of China</institution>
,
<addr-line>Hangzhou, Zhejiang 310058</addr-line>
,
<country>China</country>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="AF0003">
<institution>Zhejiang Provincial Key Laboratory of Integrative Biology and Utilization of Horticultural Plants</institution>
,
<addr-line>Hangzhou, Zhejiang 310058</addr-line>
,
<country>China</country>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Zheng, Xiaoyan" sort="Zheng, Xiaoyan" uniqKey="Zheng X" first="Xiaoyan" last="Zheng">Xiaoyan Zheng</name>
<affiliation wicri:level="1">
<nlm:aff id="AF0006">
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,
<addr-line>Lishui, Zhejiang 323000</addr-line>
,
<country>China</country>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
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</analytic>
<series>
<title level="j">Journal of Experimental Botany</title>
<idno type="ISSN">0022-0957</idno>
<idno type="eISSN">1460-2431</idno>
<imprint>
<date when="2015">2015</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<title>Highlight</title>
<p>Short-term chilling in autumn activates the accumulation of CBF, which directly promotes
<italic>DAM</italic>
expression. DAMs subsequently inhibit
<italic>FT2</italic>
expression to induce endo-dormancy; miR6390 might degrade
<italic>DAM</italic>
genes to release endo-dormancy.</p>
</div>
</front>
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</TEI>
<pmc article-type="research-article">
<pmc-dir>properties open_access</pmc-dir>
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">J Exp Bot</journal-id>
<journal-id journal-id-type="iso-abbrev">J. Exp. Bot</journal-id>
<journal-id journal-id-type="hwp">jexbot</journal-id>
<journal-id journal-id-type="publisher-id">exbotj</journal-id>
<journal-title-group>
<journal-title>Journal of Experimental Botany</journal-title>
</journal-title-group>
<issn pub-type="ppub">0022-0957</issn>
<issn pub-type="epub">1460-2431</issn>
<publisher>
<publisher-name>Oxford University Press</publisher-name>
<publisher-loc>UK</publisher-loc>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="pmid">26466664</article-id>
<article-id pub-id-type="pmc">4682432</article-id>
<article-id pub-id-type="doi">10.1093/jxb/erv454</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Research Paper</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Dormancy-associated MADS-box genes and microRNAs jointly control dormancy transition in pear (
<italic>Pyrus pyrifolia</italic>
white pear group) flower bud</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Niu</surname>
<given-names>Qingfeng</given-names>
</name>
<xref ref-type="aff" rid="AF0001">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="AF0002">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="AF0003">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Jianzhao</given-names>
</name>
<xref ref-type="aff" rid="AF0001">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="AF0002">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="AF0003">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Cai</surname>
<given-names>Danying</given-names>
</name>
<xref ref-type="aff" rid="AF0004">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Qian</surname>
<given-names>Minjie</given-names>
</name>
<xref ref-type="aff" rid="AF0001">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="AF0002">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="AF0003">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Jia</surname>
<given-names>Huimin</given-names>
</name>
<xref ref-type="aff" rid="AF0001">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="AF0002">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="AF0003">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Bai</surname>
<given-names>Songling</given-names>
</name>
<xref ref-type="aff" rid="AF0001">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="AF0002">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="AF0003">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Hussain</surname>
<given-names>Sayed</given-names>
</name>
<xref ref-type="aff" rid="AF0001">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="AF0002">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="AF0003">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>Guoqin</given-names>
</name>
<xref ref-type="aff" rid="AF0005">
<sup>5</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Teng</surname>
<given-names>Yuanwen</given-names>
</name>
<xref ref-type="aff" rid="AF0001">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="AF0002">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="AF0003">
<sup>3</sup>
</xref>
<xref ref-type="corresp" rid="c1">*</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zheng</surname>
<given-names>Xiaoyan</given-names>
</name>
<xref ref-type="aff" rid="AF0006">
<sup>6</sup>
</xref>
<xref ref-type="corresp" rid="c1">*</xref>
</contrib>
<aff id="AF0001">
<sup>1</sup>
<institution>Department of Horticulture, Zhejiang University</institution>
,
<addr-line>Hangzhou, Zhejiang 310058</addr-line>
,
<country>China</country>
</aff>
<aff id="AF0002">
<sup>2</sup>
<institution>The Key Laboratory of Horticultural Plant Growth, Development and Quality Improvement, the Ministry of Agriculture of China</institution>
,
<addr-line>Hangzhou, Zhejiang 310058</addr-line>
,
<country>China</country>
</aff>
<aff id="AF0003">
<sup>3</sup>
<institution>Zhejiang Provincial Key Laboratory of Integrative Biology and Utilization of Horticultural Plants</institution>
,
<addr-line>Hangzhou, Zhejiang 310058</addr-line>
,
<country>China</country>
</aff>
<aff id="AF0004">
<sup>4</sup>
<institution>Institute of Horticulture, Zhejiang Academy of Agricultural Sciences</institution>
,
<addr-line>Hangzhou, Zhejiang Province 310021</addr-line>
,
<country>China</country>
</aff>
<aff id="AF0005">
<sup>5</sup>
<institution>College of Agriculture, Guizhou University</institution>
,
<addr-line>Guiyang, Guizhou Province 550025</addr-line>
,
<country>China</country>
</aff>
<aff id="AF0006">
<sup>6</sup>
<institution>Institute of Horticulture and Landscape, College of Ecology, Lishui University</institution>
,
<addr-line>Lishui, Zhejiang 323000</addr-line>
,
<country>China</country>
</aff>
</contrib-group>
<author-notes>
<corresp id="c1">* To whom correspondence should be addressed. E-mail:
<email>ywteng@zju.edu.cn</email>
;
<email>zxy419@zju.edu.cn</email>
</corresp>
<fn id="fn-100">
<p>Editor: Dabing Zhang</p>
</fn>
</author-notes>
<pub-date pub-type="ppub">
<month>1</month>
<year>2016</year>
</pub-date>
<pub-date pub-type="epub">
<day>14</day>
<month>10</month>
<year>2015</year>
</pub-date>
<pub-date pub-type="pmc-release">
<day>14</day>
<month>10</month>
<year>2015</year>
</pub-date>
<pmc-comment> PMC Release delay is 0 months and 0 days and was based on the . </pmc-comment>
<volume>67</volume>
<issue>1</issue>
<fpage>239</fpage>
<lpage>257</lpage>
<permissions>
<copyright-statement>© The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology.</copyright-statement>
<copyright-year>2015</copyright-year>
<license license-type="creative-commons" xlink:href="http://creativecommons.org/licenses/by/3.0">
<license-p>This is an Open Access article distributed under the terms of the Creative Commons Attribution License (
<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link>
), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
</license>
</permissions>
<abstract abstract-type="precis">
<title>Highlight</title>
<p>Short-term chilling in autumn activates the accumulation of CBF, which directly promotes
<italic>DAM</italic>
expression. DAMs subsequently inhibit
<italic>FT2</italic>
expression to induce endo-dormancy; miR6390 might degrade
<italic>DAM</italic>
genes to release endo-dormancy.</p>
</abstract>
<abstract>
<p>Bud dormancy in perennial plants is indispensable to survival over winter and to regrowth and development in the following year. However, the molecular pathways of endo-dormancy induction, maintenance, and release are still unclear, especially in fruit crops. To identify genes with roles in regulating endo-dormancy, 30 MIKC
<sup>C</sup>
-type MADS-box genes were identified in the pear genome and characterized. The 30 genes were analysed to determine their phylogenetic relationships with homologous genes, genome locations, gene structure, tissue-specific transcript profiles, and transcriptional patterns during flower bud dormancy in ‘Suli’ pear (
<italic>Pyrus pyrifolia</italic>
white pear group). The roles in regulating bud dormancy varied among the
<italic>MIKC</italic>
gene family members. Yeast one-hybrid and transient assays showed that
<italic>Pp</italic>
CBF enhanced
<italic>PpDAM1</italic>
and
<italic>PpDAM3</italic>
transcriptional activity during the induction of dormancy, probably by binding to the C-repeat/DRE binding site, while DAM proteins inhibited the transcriptional activity of
<italic>PpFT2</italic>
during dormancy release. In the small RNA-seq analysis, 185 conserved, 24 less-conserved, and 32 pear-specific miRNAs with distinct expression patterns during bud dormancy were identified. Joint analyses of miRNAs and
<italic>MIKC</italic>
genes together with degradome data showed that miR6390 targeted
<italic>PpDAM</italic>
transcripts and degraded them to release
<italic>PpFT2</italic>
. Our data show that cross-talk among
<italic>PpCBF</italic>
,
<italic>PpDAM</italic>
,
<italic>PpFT2</italic>
, and miR6390 played important roles in regulating endo-dormancy. A model for the molecular mechanism of dormancy transition is proposed: short-term chilling in autumn activates the accumulation of CBF, which directly promotes
<italic>DAM</italic>
expression; DAM subsequently inhibits
<italic>FT</italic>
expression to induce endo-dormancy, and miR6390 degrades
<italic>DAM</italic>
genes to release endo-dormancy.</p>
</abstract>
<kwd-group>
<title>Key words:</title>
<kwd>Dormancy</kwd>
<kwd>microRNA</kwd>
<kwd>MIKC
<sup>C</sup>
-type MADS-box genes</kwd>
<kwd>
<italic>Pp</italic>
CBF</kwd>
<kwd>
<italic>PpFT2</italic>
</kwd>
<kwd>transient assays</kwd>
<kwd>yeast one-hybrid.</kwd>
</kwd-group>
<counts>
<page-count count="19"></page-count>
</counts>
</article-meta>
</front>
</pmc>
</record>

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