SHORT HYPOCOTYL1 Encodes a SMARCA3-Like Chromatin Remodeling Factor Regulating Elongation1[OPEN]
Identifieur interne : 000D25 ( Pmc/Corpus ); précédent : 000D24; suivant : 000D26SHORT HYPOCOTYL1 Encodes a SMARCA3-Like Chromatin Remodeling Factor Regulating Elongation1[OPEN]
Auteurs : Kailiang Bo ; Hui Wang ; Yupeng Pan ; Tusar K. Behera ; Sudhakar Pandey ; Changlong Wen ; Yuhui Wang ; Philipp W. Simon ; Yuhong Li ; Jinfeng Chen ; Yiqun WengSource :
- Plant Physiology [ 0032-0889 ] ; 2016.
Abstract
SHORT HYPOCOTYL1 (SH1), a chromatin remodeler, regulates hypocotyl elongation in cucumber through modulating the UVR8-mediated UVB signaling pathway.
Url:
DOI: 10.1104/pp.16.00501
PubMed: 27559036
PubMed Central: 5047076
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en"><italic>SHORT HYPOCOTYL1</italic> Encodes a SMARCA3-Like Chromatin Remodeling Factor Regulating Elongation<xref ref-type="fn" rid="fn1"><sup>1</sup></xref><xref ref-type="fn" rid="fn2"><sup>[OPEN]</sup></xref></title><author><name sortKey="Bo, Kailiang" sort="Bo, Kailiang" uniqKey="Bo K" first="Kailiang" last="Bo">Kailiang Bo</name></author><author><name sortKey="Wang, Hui" sort="Wang, Hui" uniqKey="Wang H" first="Hui" last="Wang">Hui Wang</name></author><author><name sortKey="Pan, Yupeng" sort="Pan, Yupeng" uniqKey="Pan Y" first="Yupeng" last="Pan">Yupeng Pan</name></author><author><name sortKey="Behera, Tusar K" sort="Behera, Tusar K" uniqKey="Behera T" first="Tusar K." last="Behera">Tusar K. Behera</name></author><author><name sortKey="Pandey, Sudhakar" sort="Pandey, Sudhakar" uniqKey="Pandey S" first="Sudhakar" last="Pandey">Sudhakar Pandey</name></author><author><name sortKey="Wen, Changlong" sort="Wen, Changlong" uniqKey="Wen C" first="Changlong" last="Wen">Changlong Wen</name></author><author><name sortKey="Wang, Yuhui" sort="Wang, Yuhui" uniqKey="Wang Y" first="Yuhui" last="Wang">Yuhui Wang</name></author><author><name sortKey="Simon, Philipp W" sort="Simon, Philipp W" uniqKey="Simon P" first="Philipp W." last="Simon">Philipp W. Simon</name></author><author><name sortKey="Li, Yuhong" sort="Li, Yuhong" uniqKey="Li Y" first="Yuhong" last="Li">Yuhong Li</name></author><author><name sortKey="Chen, Jinfeng" sort="Chen, Jinfeng" uniqKey="Chen J" first="Jinfeng" last="Chen">Jinfeng Chen</name></author><author><name sortKey="Weng, Yiqun" sort="Weng, Yiqun" uniqKey="Weng Y" first="Yiqun" last="Weng">Yiqun Weng</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27559036</idno><idno type="pmc">5047076</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5047076</idno><idno type="RBID">PMC:5047076</idno><idno type="doi">10.1104/pp.16.00501</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000D25</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main"><italic>SHORT HYPOCOTYL1</italic> Encodes a SMARCA3-Like Chromatin Remodeling Factor Regulating Elongation<xref ref-type="fn" rid="fn1"><sup>1</sup></xref><xref ref-type="fn" rid="fn2"><sup>[OPEN]</sup></xref></title><author><name sortKey="Bo, Kailiang" sort="Bo, Kailiang" uniqKey="Bo K" first="Kailiang" last="Bo">Kailiang Bo</name></author><author><name sortKey="Wang, Hui" sort="Wang, Hui" uniqKey="Wang H" first="Hui" last="Wang">Hui Wang</name></author><author><name sortKey="Pan, Yupeng" sort="Pan, Yupeng" uniqKey="Pan Y" first="Yupeng" last="Pan">Yupeng Pan</name></author><author><name sortKey="Behera, Tusar K" sort="Behera, Tusar K" uniqKey="Behera T" first="Tusar K." last="Behera">Tusar K. Behera</name></author><author><name sortKey="Pandey, Sudhakar" sort="Pandey, Sudhakar" uniqKey="Pandey S" first="Sudhakar" last="Pandey">Sudhakar Pandey</name></author><author><name sortKey="Wen, Changlong" sort="Wen, Changlong" uniqKey="Wen C" first="Changlong" last="Wen">Changlong Wen</name></author><author><name sortKey="Wang, Yuhui" sort="Wang, Yuhui" uniqKey="Wang Y" first="Yuhui" last="Wang">Yuhui Wang</name></author><author><name sortKey="Simon, Philipp W" sort="Simon, Philipp W" uniqKey="Simon P" first="Philipp W." last="Simon">Philipp W. Simon</name></author><author><name sortKey="Li, Yuhong" sort="Li, Yuhong" uniqKey="Li Y" first="Yuhong" last="Li">Yuhong Li</name></author><author><name sortKey="Chen, Jinfeng" sort="Chen, Jinfeng" uniqKey="Chen J" first="Jinfeng" last="Chen">Jinfeng Chen</name></author><author><name sortKey="Weng, Yiqun" sort="Weng, Yiqun" uniqKey="Weng Y" first="Yiqun" last="Weng">Yiqun Weng</name></author></analytic><series><title level="j">Plant Physiology</title><idno type="ISSN">0032-0889</idno><idno type="eISSN">1532-2548</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>SHORT HYPOCOTYL1 (SH1), a chromatin remodeler, regulates hypocotyl elongation in cucumber through modulating the UVR8-mediated UVB signaling pathway.</p></div></front></TEI><pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Plant Physiol</journal-id><journal-id journal-id-type="iso-abbrev">Plant Physiol</journal-id><journal-id journal-id-type="hwp">plantphysiol</journal-id><journal-id journal-id-type="publisher-id">aspb</journal-id><journal-title-group><journal-title>Plant Physiology</journal-title></journal-title-group><issn pub-type="ppub">0032-0889</issn><issn pub-type="epub">1532-2548</issn><publisher><publisher-name>American Society of Plant Biologists</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">27559036</article-id><article-id pub-id-type="pmc">5047076</article-id><article-id pub-id-type="publisher-id">PP201600501R1</article-id><article-id pub-id-type="doi">10.1104/pp.16.00501</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject><subj-group subj-group-type="heading"><subject>Signaling and Response</subject></subj-group></subj-group></article-categories><title-group><article-title><italic>SHORT HYPOCOTYL1</italic> Encodes a SMARCA3-Like Chromatin Remodeling Factor Regulating Elongation<xref ref-type="fn" rid="fn1"><sup>1</sup></xref><xref ref-type="fn" rid="fn2"><sup>[OPEN]</sup></xref></article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Bo</surname><given-names>Kailiang</given-names></name></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid" authenticated="false">http://orcid.org/0000-0002-6053-443X</contrib-id><name><surname>Wang</surname><given-names>Hui</given-names></name></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid" authenticated="false">http://orcid.org/0000-0003-4662-601X</contrib-id><name><surname>Pan</surname><given-names>Yupeng</given-names></name></contrib><contrib contrib-type="author"><name><surname>Behera</surname><given-names>Tusar K.</given-names></name></contrib><contrib contrib-type="author"><name><surname>Pandey</surname><given-names>Sudhakar</given-names></name></contrib><contrib contrib-type="author"><name><surname>Wen</surname><given-names>Changlong</given-names></name></contrib><contrib contrib-type="author"><name><surname>Wang</surname><given-names>Yuhui</given-names></name></contrib><contrib contrib-type="author"><name><surname>Simon</surname><given-names>Philipp W.</given-names></name></contrib><contrib contrib-type="author"><name><surname>Li</surname><given-names>Yuhong</given-names></name></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid" authenticated="false">http://orcid.org/0000-0002-4690-6778</contrib-id><name><surname>Chen</surname><given-names>Jinfeng</given-names></name><xref ref-type="corresp" rid="cor1">*</xref></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid" authenticated="false">http://orcid.org/0000-0001-9457-2234</contrib-id><name><surname>Weng</surname><given-names>Yiqun</given-names></name><xref ref-type="corresp" rid="cor1">*</xref></contrib><aff id="aff1">Horticulture Department, University of Wisconsin, Madison, Wisconsin 53706 (K.B., Y.P., Y.Wa., P.W.S., Y.We.);</aff><aff id="aff2">Horticulture College, Nanjing Agricultural University, Nanjing 210095, China (K.B., J.C.);</aff><aff id="aff3">Horticulture College, Northwest A&F University, Yangling 712100, China (H.W., Y.P., Y.L.);</aff><aff id="aff4">Division of Vegetable Science, Indian Agricultural Research Institute, New Delhi 10012, India (T.K.B.);</aff><aff id="aff5">Division of Crop Improvement, Indian Council of Agricultural Research-Indian Institute of Vegetable Research, Varanasi, Uttar Pradesh 221305, India (S.P.);</aff><aff id="aff6">Beijing Vegetable Research Center and National Engineering Research Center for Vegetables, Beijing Academy of Agricultural and Forestry Sciences, Beijing 100097, China (C.W.); and</aff><aff id="aff7">Vegetable Crops Research Unit, United States Department of Agriculture Agricultural Research Service, Madison, Wisconsin 53706 (P.W.S., Y.We.)</aff></contrib-group><author-notes><fn><p><ext-link ext-link-type="uri" xlink:href="http://www.plantphysiol.org/cgi/doi/10.1104/pp.16.00501">www.plantphysiol.org/cgi/doi/10.1104/pp.16.00501</ext-link></p></fn><corresp id="cor1"><label>*</label>Address correspondence to <email>yiqun.weng@wisc.edu</email> and <email>jfchen@njau.edu.cn</email>.</corresp><fn id="afn1"><p>The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (<ext-link ext-link-type="uri" xlink:href="http://www.plantphysiol.org">www.plantphysiol.org</ext-link>) is: Yiqun Weng (<email>yiqun.weng@wisc.edu</email>).</p></fn><fn id="afn2"><p>K.B. performed majority of the research and conducted data analysis; Y.We. designed and supervised the experiments and participated in data analysis; H.W. and Y.L. conducted yeast two-hybrid experiments; Y.P. performed genetic mapping in the WI7167 × WI7200 population; T.K.B. and S.P. collected genotypic and phenotypic data for wild cucumbers; Y.Wa. performed GWAS analysis of the data; C.W. performed SNP genotyping of the <italic>C. hystrix</italic> and XIS accessions; J.C., Y.L., and P.W.S. participated in supervising the experiments; Y.We. and K.B. wrote this article with input from the coauthors; all authors reviewed and approved this submission.</p></fn></author-notes><pmc-comment>Fake ppub date generated by PMC from publisher
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<pub-date pub-type="ppub"><month>10</month><year>2016</year></pub-date><pub-date pub-type="epub"><day>24</day><month>8</month><year>2016</year></pub-date><pub-date pub-type="pmc-release"><day>24</day><month>8</month><year>2016</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on the
<volume>172</volume><issue>2</issue><fpage>1273</fpage><lpage>1292</lpage><history><date date-type="received"><day>02</day><month>4</month><year>2016</year></date><date date-type="accepted"><day>22</day><month>8</month><year>2016</year></date></history><permissions><copyright-statement>© 2016 American Society of Plant Biologists. All Rights Reserved.</copyright-statement><copyright-year>2016</copyright-year><license><ali:license_ref specific-use="vor" start_date="2016-10-03">http://www.license-url.com</ali:license_ref><license-p>Readers may use this article as long as the work is properly cited, the use is educational and not for profit, and the work is not altered. More information is available at <ext-link ext-link-type="uri" xlink:href="http://www.plantphysiol.org/site/license">www.plantphysiol.org/site/license</ext-link>.</license-p></license></permissions><self-uri xlink:role="icon" xlink:href="PP_PP201600501R1_ic1.gif"></self-uri><abstract abstract-type="precis"><p>SHORT HYPOCOTYL1 (SH1), a chromatin remodeler, regulates hypocotyl elongation in cucumber through modulating the UVR8-mediated UVB signaling pathway.</p></abstract><abstract><p>In Arabidopsis (<italic>Arabidopsis thaliana</italic>), the UVR8-mediated signaling pathway is employed to attain UVB protection and acclimation to deal with low-dosage UVB (<xref ref-type="def" rid="def1">LDUVB</xref>)-induced stresses. Here, we identified SHORT HYPOCOTYL1 (SH1) in cucumber (<italic>Cucumis sativus</italic>), which regulates <xref ref-type="def" rid="def1">LDUVB</xref>-dependent hypocotyl elongation by modulating the UVR8 signaling pathway. We showed that hypocotyl elongation in cucumbers carrying the recessive <italic>sh1</italic> allele was <xref ref-type="def" rid="def1">LDUVB</xref> insensitive and that <italic>Sh1</italic> encoded a human SMARCA3-like chromatin remodeling factor. The allele frequency and distribution pattern at this locus among natural populations supported the wild cucumber origin of <italic>sh1</italic> for local adaptation, which was under selection during domestication. The cultivated cucumber carries predominantly the <italic>Sh1</italic> allele; the <italic>sh1</italic> allele is nearly fixed in the semiwild Xishuangbanna cucumber, and the wild cucumber population is largely at Hardy-Weinberg equilibrium for the two alleles. The SH1 protein sequence was highly conserved among eukaryotic organisms, but its regulation of hypocotyl elongation in cucumber seems to be a novel function. While <italic>Sh1</italic> expression was inhibited by <xref ref-type="def" rid="def1">LDUVB</xref>, its transcript abundance was highly correlated with hypocotyl elongation rate and the expression level of cell-elongation-related genes. Expression profiling of key regulators in the UVR8 signaling pathway revealed significant differential expression of <italic>CsHY5</italic> between two near isogenic lines of <italic>Sh1</italic>. <italic>Sh1</italic> and <italic>CsHY5</italic> acted antagonistically at transcriptional level. A working model was proposed in which <italic>Sh1</italic> regulates <xref ref-type="def" rid="def1">LDUVB</xref>-dependent hypocotyl elongation in cucumber through changing the chromatin states and thus the accessibility of CsHY5 in the UVR8 signaling pathway to promoters of <xref ref-type="def" rid="def1">LDUVB</xref>-responsive genes for hypocotyl elongation.</p></abstract><counts><fig-count count="10"></fig-count><table-count count="1"></table-count><equation-count count="0"></equation-count><ref-count count="109"></ref-count><page-count count="20"></page-count></counts><custom-meta-group><custom-meta><meta-name> DJS Export </meta-name><meta-value>v1</meta-value></custom-meta></custom-meta-group></article-meta><notes><glossary><title>Glossary</title><def-list><def-item><term id="term1">LDUVB</term><def id="def1"><p>low-dosage UVB</p></def></def-item><def-item><term id="term2">HLTF</term><def id="def2"><p>helicase-like transcription factor</p></def></def-item><def-item><term id="term3">RIL</term><def id="def3"><p>recombinant inbred line</p></def></def-item></def-list></glossary></notes></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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