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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Plant exomics: Concepts, applications and methodologies in crop improvement</title><author><name sortKey="Hashmi, Uzair" sort="Hashmi, Uzair" uniqKey="Hashmi U" first="Uzair" last="Hashmi">Uzair Hashmi</name><affiliation><nlm:aff id="af0001"><institution>Atta ur Rahman School of Applied Biosciences; National University of Sciences and Technology</institution>; Islamabad,<country>Pakistan</country></nlm:aff></affiliation></author><author><name sortKey="Shafqat, Samia" sort="Shafqat, Samia" uniqKey="Shafqat S" first="Samia" last="Shafqat">Samia Shafqat</name><affiliation><nlm:aff id="af0001"><institution>Atta ur Rahman School of Applied Biosciences; National University of Sciences and Technology</institution>; Islamabad,<country>Pakistan</country></nlm:aff></affiliation></author><author><name sortKey="Khan, Faria" sort="Khan, Faria" uniqKey="Khan F" first="Faria" last="Khan">Faria Khan</name><affiliation><nlm:aff id="af0001"><institution>Atta ur Rahman School of Applied Biosciences; National University of Sciences and Technology</institution>; Islamabad,<country>Pakistan</country></nlm:aff></affiliation></author><author><name sortKey="Majid, Misbah" sort="Majid, Misbah" uniqKey="Majid M" first="Misbah" last="Majid">Misbah Majid</name><affiliation><nlm:aff id="af0001"><institution>Atta ur Rahman School of Applied Biosciences; National University of Sciences and Technology</institution>; Islamabad,<country>Pakistan</country></nlm:aff></affiliation></author><author><name sortKey="Hussain, Harris" sort="Hussain, Harris" uniqKey="Hussain H" first="Harris" last="Hussain">Harris Hussain</name><affiliation><nlm:aff id="af0001"><institution>Atta ur Rahman School of Applied Biosciences; National University of Sciences and Technology</institution>; Islamabad,<country>Pakistan</country></nlm:aff></affiliation></author><author><name sortKey="Kazi, Alvina Gul" sort="Kazi, Alvina Gul" uniqKey="Kazi A" first="Alvina Gul" last="Kazi">Alvina Gul Kazi</name><affiliation><nlm:aff id="af0001"><institution>Atta ur Rahman School of Applied Biosciences; National University of Sciences and Technology</institution>; Islamabad,<country>Pakistan</country></nlm:aff></affiliation></author><author><name sortKey="John, Riffat" sort="John, Riffat" uniqKey="John R" first="Riffat" last="John">Riffat John</name><affiliation><nlm:aff id="af0002"><institution>Department of Botany; University of Kashmir</institution>; Jammu and Kashmir,<country>India</country></nlm:aff></affiliation></author><author><name sortKey="Ahmad, Parvaiz" sort="Ahmad, Parvaiz" uniqKey="Ahmad P" first="Parvaiz" last="Ahmad">Parvaiz Ahmad</name><affiliation><nlm:aff id="af0003"><institution>Department of Botany; S.P. College Srinagar</institution>; Jammu and Kashmir,<country>India</country></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">25482786</idno><idno type="pmc">4622497</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4622497</idno><idno type="RBID">PMC:4622497</idno><idno type="doi">10.4161/15592324.2014.976152</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">000240</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Plant exomics: Concepts, applications and methodologies in crop improvement</title><author><name sortKey="Hashmi, Uzair" sort="Hashmi, Uzair" uniqKey="Hashmi U" first="Uzair" last="Hashmi">Uzair Hashmi</name><affiliation><nlm:aff id="af0001"><institution>Atta ur Rahman School of Applied Biosciences; National University of Sciences and Technology</institution>; Islamabad,<country>Pakistan</country></nlm:aff></affiliation></author><author><name sortKey="Shafqat, Samia" sort="Shafqat, Samia" uniqKey="Shafqat S" first="Samia" last="Shafqat">Samia Shafqat</name><affiliation><nlm:aff id="af0001"><institution>Atta ur Rahman School of Applied Biosciences; National University of Sciences and Technology</institution>; Islamabad,<country>Pakistan</country></nlm:aff></affiliation></author><author><name sortKey="Khan, Faria" sort="Khan, Faria" uniqKey="Khan F" first="Faria" last="Khan">Faria Khan</name><affiliation><nlm:aff id="af0001"><institution>Atta ur Rahman School of Applied Biosciences; National University of Sciences and Technology</institution>; Islamabad,<country>Pakistan</country></nlm:aff></affiliation></author><author><name sortKey="Majid, Misbah" sort="Majid, Misbah" uniqKey="Majid M" first="Misbah" last="Majid">Misbah Majid</name><affiliation><nlm:aff id="af0001"><institution>Atta ur Rahman School of Applied Biosciences; National University of Sciences and Technology</institution>; Islamabad,<country>Pakistan</country></nlm:aff></affiliation></author><author><name sortKey="Hussain, Harris" sort="Hussain, Harris" uniqKey="Hussain H" first="Harris" last="Hussain">Harris Hussain</name><affiliation><nlm:aff id="af0001"><institution>Atta ur Rahman School of Applied Biosciences; National University of Sciences and Technology</institution>; Islamabad,<country>Pakistan</country></nlm:aff></affiliation></author><author><name sortKey="Kazi, Alvina Gul" sort="Kazi, Alvina Gul" uniqKey="Kazi A" first="Alvina Gul" last="Kazi">Alvina Gul Kazi</name><affiliation><nlm:aff id="af0001"><institution>Atta ur Rahman School of Applied Biosciences; National University of Sciences and Technology</institution>; Islamabad,<country>Pakistan</country></nlm:aff></affiliation></author><author><name sortKey="John, Riffat" sort="John, Riffat" uniqKey="John R" first="Riffat" last="John">Riffat John</name><affiliation><nlm:aff id="af0002"><institution>Department of Botany; University of Kashmir</institution>; Jammu and Kashmir,<country>India</country></nlm:aff></affiliation></author><author><name sortKey="Ahmad, Parvaiz" sort="Ahmad, Parvaiz" uniqKey="Ahmad P" first="Parvaiz" last="Ahmad">Parvaiz Ahmad</name><affiliation><nlm:aff id="af0003"><institution>Department of Botany; S.P. College Srinagar</institution>; Jammu and Kashmir,<country>India</country></nlm:aff></affiliation></author></analytic><series><title level="j">Plant Signaling & Behavior</title><idno type="ISSN">1559-2316</idno><idno type="eISSN">1559-2324</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Molecular breeding has a crucial role in improvement of crops. Conventional breeding techniques have failed to ameliorate food production. Next generation sequencing has established new concepts of molecular breeding. Exome sequencing has proven to be a significant tool for assessing natural evolution in plants, studying host pathogen interactions and betterment of crop production as exons assist in interpretation of allelic variation with respect to their phenotype. This review covers the platforms for exome sequencing, next generation sequencing technologies that have revolutionized exome sequencing and led toward development of third generation sequencing. Also discussed in this review are the uses of these sequencing technologies to improve wheat, rice and cotton yield and how these technologies are used in exploring the biodiversity of crops, providing better understanding of plant-host pathogen interaction and assessing the process of natural evolution in crops and it also covers how exome sequencing identifies the gene pool involved in symbiotic and other co-existential systems. Furthermore, we conclude how integration of other methodologies including whole genome sequencing, proteomics, transcriptomics and metabolomics with plant exomics covers the areas which are left untouched with exomics alone and in the end how these integration will transform the future of crops.</p></div></front></TEI><pmc article-type="review-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Plant Signal Behav</journal-id><journal-id journal-id-type="iso-abbrev">Plant Signal Behav</journal-id><journal-id journal-id-type="pmc">KPSB</journal-id><journal-title-group><journal-title>Plant Signaling & Behavior</journal-title></journal-title-group><issn pub-type="ppub">1559-2316</issn><issn pub-type="epub">1559-2324</issn><publisher><publisher-name>Taylor & Francis</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">25482786</article-id><article-id pub-id-type="pmc">4622497</article-id><article-id pub-id-type="publisher-id">976152</article-id><article-id pub-id-type="doi">10.4161/15592324.2014.976152</article-id><article-categories><subj-group subj-group-type="heading"><subject>Review</subject></subj-group></article-categories><title-group><article-title>Plant exomics: Concepts, applications and methodologies in crop improvement</article-title><alt-title alt-title-type="running-authors">Review</alt-title><alt-title alt-title-type="running-title">Plant Exomics and Crop Improvement</alt-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Hashmi</surname><given-names>Uzair</given-names></name><xref ref-type="aff" rid="af0001"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Shafqat</surname><given-names>Samia</given-names></name><xref ref-type="aff" rid="af0001"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Khan</surname><given-names>Faria</given-names></name><xref ref-type="aff" rid="af0001"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Majid</surname><given-names>Misbah</given-names></name><xref ref-type="aff" rid="af0001"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Hussain</surname><given-names>Harris</given-names></name><xref ref-type="aff" rid="af0001"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Kazi</surname><given-names>Alvina Gul</given-names></name><xref ref-type="aff" rid="af0001"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>John</surname><given-names>Riffat</given-names></name><xref ref-type="aff" rid="af0002"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Ahmad</surname><given-names>Parvaiz</given-names></name><xref ref-type="aff" rid="af0003"><sup>3</sup></xref><xref ref-type="corresp" rid="an0001"><sup>*</sup></xref></contrib><aff id="af0001"><label>1</label><institution>Atta ur Rahman School of Applied Biosciences; National University of Sciences and Technology</institution>; Islamabad,<country>Pakistan</country></aff><aff id="af0002"><label>2</label><institution>Department of Botany; University of Kashmir</institution>; Jammu and Kashmir,<country>India</country></aff><aff id="af0003"><label>3</label><institution>Department of Botany; S.P. College Srinagar</institution>; Jammu and Kashmir,<country>India</country></aff></contrib-group><author-notes><corresp id="an0001"><label>*</label>Correspondence to: Parvaiz Ahmad; Email: <email xlink:href="parvaizbot@yahoo.com">parvaizbot@yahoo.com</email></corresp></author-notes><pub-date pub-type="collection"><month>1</month><year>2015</year></pub-date><pub-date pub-type="epub"><day>31</day><month>10</month><year>2014</year></pub-date><volume>10</volume><issue>1</issue><elocation-id seq="8">e976152</elocation-id><history><date date-type="received"><day>5</day><month>7</month><year>2014</year></date><date date-type="rev-recd"><day>17</day><month>8</month><year>2014</year></date><date date-type="accepted"><day>18</day><month>8</month><year>2014</year></date></history><permissions><copyright-statement>© 2015 Taylor & Francis Group, LLC</copyright-statement><copyright-year>2015</copyright-year><copyright-holder>Taylor & Francis Group, LLC</copyright-holder></permissions><self-uri content-type="pdf" xlink:href="kpsb-10-01-976152.pdf"></self-uri><abstract><p>Molecular breeding has a crucial role in improvement of crops. Conventional breeding techniques have failed to ameliorate food production. Next generation sequencing has established new concepts of molecular breeding. Exome sequencing has proven to be a significant tool for assessing natural evolution in plants, studying host pathogen interactions and betterment of crop production as exons assist in interpretation of allelic variation with respect to their phenotype. This review covers the platforms for exome sequencing, next generation sequencing technologies that have revolutionized exome sequencing and led toward development of third generation sequencing. Also discussed in this review are the uses of these sequencing technologies to improve wheat, rice and cotton yield and how these technologies are used in exploring the biodiversity of crops, providing better understanding of plant-host pathogen interaction and assessing the process of natural evolution in crops and it also covers how exome sequencing identifies the gene pool involved in symbiotic and other co-existential systems. Furthermore, we conclude how integration of other methodologies including whole genome sequencing, proteomics, transcriptomics and metabolomics with plant exomics covers the areas which are left untouched with exomics alone and in the end how these integration will transform the future of crops.</p></abstract><kwd-group kwd-group-type="author"><title>Keywords</title><kwd>biodiversity</kwd><kwd>crop improvement</kwd><kwd>exome sequencing</kwd><kwd>plant biotechnology</kwd><kwd>plant-host pathogen interactions</kwd></kwd-group><counts><fig-count count="3"></fig-count><table-count count="1"></table-count><ref-count count="130"></ref-count><page-count count="16"></page-count></counts></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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