Genetically Based Location from Triploid Populations and Gene Ontology of a 3.3-Mb Genome Region Linked to Alternaria Brown Spot Resistance in Citrus Reveal Clusters of Resistance Genes
Identifieur interne : 000A64 ( Pmc/Checkpoint ); précédent : 000A63; suivant : 000A65Genetically Based Location from Triploid Populations and Gene Ontology of a 3.3-Mb Genome Region Linked to Alternaria Brown Spot Resistance in Citrus Reveal Clusters of Resistance Genes
Auteurs : José Cuenca [Espagne] ; Pablo Aleza [Espagne] ; Antonio Vicent [Espagne] ; Dominique Brunel [France] ; Patrick Ollitrault [Espagne, France] ; Luis Navarro [Espagne]Source :
- PLoS ONE [ 1932-6203 ] ; 2013.
Abstract
Genetic analysis of phenotypical traits and marker-trait association in polyploid species is generally considered as a challenge. In the present work, different approaches were combined taking advantage of the particular genetic structures of 2n gametes resulting from second division restitution (SDR) to map a genome region linked to Alternaria brown spot (ABS) resistance in triploid citrus progeny. ABS in citrus is a serious disease caused by the tangerine pathotype of the fungus
Url:
DOI: 10.1371/journal.pone.0076755
PubMed: 24116149
PubMed Central: 3792864
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Moncada, Valencia</wicri:regionArea><wicri:noRegion>Valencia</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">24116149</idno><idno type="pmc">3792864</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3792864</idno><idno type="RBID">PMC:3792864</idno><idno type="doi">10.1371/journal.pone.0076755</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">001167</idno><idno type="wicri:Area/Pmc/Curation">001166</idno><idno type="wicri:Area/Pmc/Checkpoint">000A64</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genetically Based Location from Triploid Populations and Gene Ontology of a 3.3-Mb Genome Region Linked to Alternaria Brown Spot Resistance in Citrus Reveal Clusters of Resistance Genes</title><author><name sortKey="Cuenca, Jose" sort="Cuenca, Jose" uniqKey="Cuenca J" first="José" last="Cuenca">José Cuenca</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias. Moncada, Valencia, Spain</addr-line></nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias. Moncada, Valencia</wicri:regionArea><wicri:noRegion>Valencia</wicri:noRegion></affiliation></author><author><name sortKey="Aleza, Pablo" sort="Aleza, Pablo" uniqKey="Aleza P" first="Pablo" last="Aleza">Pablo Aleza</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias. Moncada, Valencia, Spain</addr-line></nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias. Moncada, Valencia</wicri:regionArea><wicri:noRegion>Valencia</wicri:noRegion></affiliation></author><author><name sortKey="Vicent, Antonio" sort="Vicent, Antonio" uniqKey="Vicent A" first="Antonio" last="Vicent">Antonio Vicent</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias. Moncada, Valencia, Spain</addr-line></nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias. Moncada, Valencia</wicri:regionArea><wicri:noRegion>Valencia</wicri:noRegion></affiliation></author><author><name sortKey="Brunel, Dominique" sort="Brunel, Dominique" uniqKey="Brunel D" first="Dominique" last="Brunel">Dominique Brunel</name><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Etude du Polymorphisme des Genomes Vegetaux, Institut National de la Recherche Agronomique, Évry, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Etude du Polymorphisme des Genomes Vegetaux, Institut National de la Recherche Agronomique, Évry</wicri:regionArea><placeName><settlement type="city">Évry (Essonne)</settlement></placeName></affiliation></author><author><name sortKey="Ollitrault, Patrick" sort="Ollitrault, Patrick" uniqKey="Ollitrault P" first="Patrick" last="Ollitrault">Patrick Ollitrault</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias. Moncada, Valencia, Spain</addr-line></nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias. Moncada, Valencia</wicri:regionArea><wicri:noRegion>Valencia</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Etude du Polymorphisme des Genomes Vegetaux, Institut National de la Recherche Agronomique, Évry, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Etude du Polymorphisme des Genomes Vegetaux, Institut National de la Recherche Agronomique, Évry</wicri:regionArea><placeName><settlement type="city">Évry (Essonne)</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>BIOS Department, Amélioration Génétique des Espèces à Multiplication Végétative. Centre de Coopeération Internationale en Recherche Agronomique pour le Développement, Montpellier, France</addr-line></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>BIOS Department, Amélioration Génétique des Espèces à Multiplication Végétative. Centre de Coopeération Internationale en Recherche Agronomique pour le Développement, Montpellier</wicri:regionArea><placeName><settlement type="city">Montpellier</settlement></placeName></affiliation></author><author><name sortKey="Navarro, Luis" sort="Navarro, Luis" uniqKey="Navarro L" first="Luis" last="Navarro">Luis Navarro</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias. Moncada, Valencia, Spain</addr-line></nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias. Moncada, Valencia</wicri:regionArea><wicri:noRegion>Valencia</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Genetic analysis of phenotypical traits and marker-trait association in polyploid species is generally considered as a challenge. In the present work, different approaches were combined taking advantage of the particular genetic structures of 2n gametes resulting from second division restitution (SDR) to map a genome region linked to Alternaria brown spot (ABS) resistance in triploid citrus progeny. ABS in citrus is a serious disease caused by the tangerine pathotype of the fungus <italic>Alternaria alternata</italic>. This pathogen produces ACT-toxin, which induces necrotic lesions on fruit and young leaves, defoliation and fruit drop in susceptible genotypes. It is a strong concern for triploid breeding programs aiming to produce seedless mandarin cultivars. The monolocus dominant inheritance of susceptibility, proposed on the basis of diploid population studies, was corroborated in triploid progeny. Bulk segregant analysis coupled with genome scan using a large set of genetically mapped SNP markers and targeted genetic mapping by half tetrad analysis, using SSR and SNP markers, allowed locating a 3.3 Mb genomic region linked to ABS resistance near the centromere of chromosome III. Clusters of resistance genes were identified by gene ontology analysis of this genomic region. Some of these genes are good candidates to control the dominant susceptibility to the ACT-toxin. SSR and SNP markers were developed for efficient early marker-assisted selection of ABS resistant hybrids.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Akimitsu, K" uniqKey="Akimitsu K">K Akimitsu</name></author><author><name sortKey="Peever, Tl" uniqKey="Peever T">TL Peever</name></author><author><name sortKey="Timmer, Lw" uniqKey="Timmer L">LW Timmer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pegg, Kg" uniqKey="Pegg K">KG Pegg</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Golmohammadi, M" uniqKey="Golmohammadi M">M Golmohammadi</name></author><author><name sortKey="Andrew, M" uniqKey="Andrew M">M Andrew</name></author><author><name sortKey="Peever, Tl" uniqKey="Peever T">TL Peever</name></author><author><name sortKey="Peres, Na" uniqKey="Peres N">NA Peres</name></author><author><name sortKey="Timmer, Lw" uniqKey="Timmer L">LW 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open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">PLoS One</journal-id><journal-id journal-id-type="iso-abbrev">PLoS ONE</journal-id><journal-id journal-id-type="publisher-id">plos</journal-id><journal-id journal-id-type="pmc">plosone</journal-id><journal-title-group><journal-title>PLoS ONE</journal-title></journal-title-group><issn pub-type="epub">1932-6203</issn><publisher><publisher-name>Public Library of Science</publisher-name><publisher-loc>San Francisco, USA</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">24116149</article-id><article-id pub-id-type="pmc">3792864</article-id><article-id pub-id-type="publisher-id">PONE-D-13-25490</article-id><article-id pub-id-type="doi">10.1371/journal.pone.0076755</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group></article-categories><title-group><article-title>Genetically Based Location from Triploid Populations and Gene Ontology of a 3.3-Mb Genome Region Linked to Alternaria Brown Spot Resistance in Citrus Reveal Clusters of Resistance Genes</article-title><alt-title alt-title-type="running-head">Genome Region Linked to ABS Resistance in Citrus</alt-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Cuenca</surname><given-names>José</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Aleza</surname><given-names>Pablo</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Vicent</surname><given-names>Antonio</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Brunel</surname><given-names>Dominique</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Ollitrault</surname><given-names>Patrick</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff2"><sup>2</sup></xref><xref ref-type="aff" rid="aff3"><sup>3</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib><contrib contrib-type="author"><name><surname>Navarro</surname><given-names>Luis</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib></contrib-group><aff id="aff1"><label>1</label><addr-line>Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias. Moncada, Valencia, Spain</addr-line></aff><aff id="aff2"><label>2</label><addr-line>Etude du Polymorphisme des Genomes Vegetaux, Institut National de la Recherche Agronomique, Évry, France</addr-line></aff><aff id="aff3"><label>3</label><addr-line>BIOS Department, Amélioration Génétique des Espèces à Multiplication Végétative. Centre de Coopeération Internationale en Recherche Agronomique pour le Développement, Montpellier, France</addr-line></aff><contrib-group><contrib contrib-type="editor"><name><surname>Fang</surname><given-names>David D</given-names></name><role>Editor</role><xref ref-type="aff" rid="edit1"></xref></contrib></contrib-group><aff id="edit1"><addr-line>USDA-ARS-SRRC, United States of America</addr-line></aff><author-notes><corresp id="cor1">* E-mail: <email>ollitrault@cirad.fr</email> (PO); <email>lnavarro@ivia.es</email> (LN)</corresp><fn fn-type="conflict"><p><bold>Competing Interests: </bold>The authors have declared that no competing interests exist.</p></fn><fn fn-type="con"><p>Conceived and designed the experiments: PO LN. Performed the experiments: JC. Analyzed the data: JC DB. Wrote the manuscript: JC PO. Guided fungal experiments: AV. Provided plant material: PA. </p></fn></author-notes><pub-date pub-type="collection"><year>2013</year></pub-date><pub-date pub-type="epub"><day>8</day><month>10</month><year>2013</year></pub-date><volume>8</volume><issue>10</issue><elocation-id>e76755</elocation-id><history><date date-type="received"><day>19</day><month>6</month><year>2013</year></date><date date-type="accepted"><day>23</day><month>8</month><year>2013</year></date></history><permissions><copyright-year>2013</copyright-year><copyright-holder>Cuenca et al</copyright-holder><license><license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p></license></permissions><abstract><p>Genetic analysis of phenotypical traits and marker-trait association in polyploid species is generally considered as a challenge. In the present work, different approaches were combined taking advantage of the particular genetic structures of 2n gametes resulting from second division restitution (SDR) to map a genome region linked to Alternaria brown spot (ABS) resistance in triploid citrus progeny. ABS in citrus is a serious disease caused by the tangerine pathotype of the fungus <italic>Alternaria alternata</italic>. This pathogen produces ACT-toxin, which induces necrotic lesions on fruit and young leaves, defoliation and fruit drop in susceptible genotypes. It is a strong concern for triploid breeding programs aiming to produce seedless mandarin cultivars. The monolocus dominant inheritance of susceptibility, proposed on the basis of diploid population studies, was corroborated in triploid progeny. Bulk segregant analysis coupled with genome scan using a large set of genetically mapped SNP markers and targeted genetic mapping by half tetrad analysis, using SSR and SNP markers, allowed locating a 3.3 Mb genomic region linked to ABS resistance near the centromere of chromosome III. Clusters of resistance genes were identified by gene ontology analysis of this genomic region. Some of these genes are good candidates to control the dominant susceptibility to the ACT-toxin. SSR and SNP markers were developed for efficient early marker-assisted selection of ABS resistant hybrids.</p></abstract><funding-group><funding-statement>This research was jointly financed by the grant AGL2011-26490-Ministry of "Economia y Competividad"-Fondo Europeo de Desarrollo Regional (FEDER) and INIA RTA2010-00105-00-00 and DOC-INIA. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</funding-statement></funding-group></article-meta></front></pmc><affiliations><list><country><li>Espagne</li><li>France</li></country><settlement><li>Montpellier</li><li>Évry (Essonne)</li></settlement></list><tree><country name="Espagne"><noRegion><name sortKey="Cuenca, Jose" sort="Cuenca, Jose" uniqKey="Cuenca J" first="José" last="Cuenca">José Cuenca</name></noRegion><name sortKey="Aleza, Pablo" sort="Aleza, Pablo" uniqKey="Aleza P" first="Pablo" last="Aleza">Pablo Aleza</name><name sortKey="Navarro, Luis" sort="Navarro, Luis" uniqKey="Navarro L" first="Luis" last="Navarro">Luis Navarro</name><name sortKey="Ollitrault, Patrick" sort="Ollitrault, Patrick" uniqKey="Ollitrault P" first="Patrick" last="Ollitrault">Patrick Ollitrault</name><name sortKey="Vicent, Antonio" sort="Vicent, Antonio" uniqKey="Vicent A" first="Antonio" last="Vicent">Antonio Vicent</name></country><country name="France"><noRegion><name sortKey="Brunel, Dominique" sort="Brunel, Dominique" uniqKey="Brunel D" first="Dominique" last="Brunel">Dominique Brunel</name></noRegion><name sortKey="Ollitrault, Patrick" sort="Ollitrault, Patrick" uniqKey="Ollitrault P" first="Patrick" last="Ollitrault">Patrick Ollitrault</name><name sortKey="Ollitrault, Patrick" sort="Ollitrault, Patrick" uniqKey="Ollitrault P" first="Patrick" last="Ollitrault">Patrick Ollitrault</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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