Metabolomics as a Tool to Investigate Abiotic Stress Tolerance in Plants
Identifieur interne : 000A33 ( Pmc/Checkpoint ); précédent : 000A32; suivant : 000A34Metabolomics as a Tool to Investigate Abiotic Stress Tolerance in Plants
Auteurs : Vicent Arbona ; Matías Manzi ; Carlos De Ollas ; Aurelio G Mez-CadenasSource :
- International Journal of Molecular Sciences [ 1422-0067 ] ; 2013.
Abstract
Metabolites reflect the integration of gene expression, protein interaction and other different regulatory processes and are therefore closer to the phenotype than mRNA transcripts or proteins alone. Amongst all
Url:
DOI: 10.3390/ijms14034885
PubMed: 23455464
PubMed Central: 3634444
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Metabolomics as a Tool to Investigate Abiotic Stress Tolerance in Plants</title><author><name sortKey="Arbona, Vicent" sort="Arbona, Vicent" uniqKey="Arbona V" first="Vicent" last="Arbona">Vicent Arbona</name></author><author><name sortKey="Manzi, Matias" sort="Manzi, Matias" uniqKey="Manzi M" first="Matías" last="Manzi">Matías Manzi</name></author><author><name sortKey="De Ollas, Carlos" sort="De Ollas, Carlos" uniqKey="De Ollas C" first="Carlos" last="De Ollas">Carlos De Ollas</name></author><author><name sortKey="G Mez Cadenas, Aurelio" sort="G Mez Cadenas, Aurelio" uniqKey="G Mez Cadenas A" first="Aurelio" last="G Mez-Cadenas">Aurelio G Mez-Cadenas</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">23455464</idno><idno type="pmc">3634444</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3634444</idno><idno type="RBID">PMC:3634444</idno><idno type="doi">10.3390/ijms14034885</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">001388</idno><idno type="wicri:Area/Pmc/Curation">001386</idno><idno type="wicri:Area/Pmc/Checkpoint">000A33</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Metabolomics as a Tool to Investigate Abiotic Stress Tolerance in Plants</title><author><name sortKey="Arbona, Vicent" sort="Arbona, Vicent" uniqKey="Arbona V" first="Vicent" last="Arbona">Vicent Arbona</name></author><author><name sortKey="Manzi, Matias" sort="Manzi, Matias" uniqKey="Manzi M" first="Matías" last="Manzi">Matías Manzi</name></author><author><name sortKey="De Ollas, Carlos" sort="De Ollas, Carlos" uniqKey="De Ollas C" first="Carlos" last="De Ollas">Carlos De Ollas</name></author><author><name sortKey="G Mez Cadenas, Aurelio" sort="G Mez Cadenas, Aurelio" uniqKey="G Mez Cadenas A" first="Aurelio" last="G Mez-Cadenas">Aurelio G Mez-Cadenas</name></author></analytic><series><title level="j">International Journal of Molecular Sciences</title><idno type="eISSN">1422-0067</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Metabolites reflect the integration of gene expression, protein interaction and other different regulatory processes and are therefore closer to the phenotype than mRNA transcripts or proteins alone. Amongst all <italic>–omics</italic> technologies, metabolomics is the most transversal and can be applied to different organisms with little or no modifications. It has been successfully applied to the study of molecular phenotypes of plants in response to abiotic stress in order to find particular patterns associated to stress tolerance. These studies have highlighted the essential involvement of primary metabolites: sugars, amino acids and Krebs cycle intermediates as direct markers of photosynthetic dysfunction as well as effectors of osmotic readjustment. On the contrary, secondary metabolites are more specific of genera and species and respond to particular stress conditions as antioxidants, Reactive Oxygen Species (ROS) scavengers, coenzymes, UV and excess radiation screen and also as regulatory molecules. In addition, the induction of secondary metabolites by several abiotic stress conditions could also be an effective mechanism of cross-protection against biotic threats, providing a link between abiotic and biotic stress responses. Moreover, the presence/absence and relative accumulation of certain metabolites along with gene expression data provides accurate markers (mQTL or MWAS) for tolerant crop selection in breeding programs.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Saito, K" uniqKey="Saito K">K. Saito</name></author><author><name sortKey="Matsuda, F" uniqKey="Matsuda F">F. Matsuda</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fukushima, A" uniqKey="Fukushima A">A. Fukushima</name></author><author><name sortKey="Kusano, M" uniqKey="Kusano M">M. Kusano</name></author><author><name sortKey="Redestig, H" uniqKey="Redestig H">H. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Int J Mol Sci</journal-id><journal-id journal-id-type="iso-abbrev">Int J Mol Sci</journal-id><journal-id journal-id-type="publisher-id">ijms</journal-id><journal-title-group><journal-title>International Journal of Molecular Sciences</journal-title></journal-title-group><issn pub-type="epub">1422-0067</issn><publisher><publisher-name>Molecular Diversity Preservation International (MDPI)</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">23455464</article-id><article-id pub-id-type="pmc">3634444</article-id><article-id pub-id-type="doi">10.3390/ijms14034885</article-id><article-id pub-id-type="publisher-id">ijms-14-04885</article-id><article-categories><subj-group subj-group-type="heading"><subject>Review</subject></subj-group></article-categories><title-group><article-title>Metabolomics as a Tool to Investigate Abiotic Stress Tolerance in Plants</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Arbona</surname><given-names>Vicent</given-names></name></contrib><contrib contrib-type="author"><name><surname>Manzi</surname><given-names>Matías</given-names></name></contrib><contrib contrib-type="author"><name><surname>de Ollas</surname><given-names>Carlos</given-names></name></contrib><contrib contrib-type="author"><name><surname>Gómez-Cadenas</surname><given-names>Aurelio</given-names></name><xref ref-type="corresp" rid="c1-ijms-14-04885">*</xref></contrib><aff id="af1-ijms-14-04885">Plant Ecophysiology and Biotechnology Laboratory, Departament of Agricultural and Environmental Sciences, Universitat Jaume I, Castello de la Plana E-12071, Spain; E-Mails:<email>arbona@uji.es</email> (V.A.);<email>mmanzif@gmail.com</email> (M.M.);<email>deollas@uji.es</email> (C.O.)</aff></contrib-group><author-notes><corresp id="c1-ijms-14-04885"><label>*</label>Author to whom correspondence should be addressed; E-Mail: <email>aurelio.gomez@uji.es</email>; Tel.: +34-964-729-402; Fax: +34-964-728-216.</corresp></author-notes><pub-date pub-type="collection"><month>3</month><year>2013</year></pub-date><pub-date pub-type="epub"><day>01</day><month>3</month><year>2013</year></pub-date><volume>14</volume><issue>3</issue><fpage>4885</fpage><lpage>4911</lpage><history><date date-type="received"><day>31</day><month>12</month><year>2012</year></date><date date-type="rev-recd"><day>18</day><month>2</month><year>2013</year></date><date date-type="accepted"><day>20</day><month>2</month><year>2013</year></date></history><permissions><copyright-statement>© 2013 by the authors; licensee MDPI, Basel, Switzerland.</copyright-statement><copyright-year>2013</copyright-year><license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/3.0"><license-p><pmc-comment>CREATIVE COMMONS</pmc-comment>This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution license (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link>).</license-p></license></permissions><abstract><p>Metabolites reflect the integration of gene expression, protein interaction and other different regulatory processes and are therefore closer to the phenotype than mRNA transcripts or proteins alone. Amongst all <italic>–omics</italic> technologies, metabolomics is the most transversal and can be applied to different organisms with little or no modifications. It has been successfully applied to the study of molecular phenotypes of plants in response to abiotic stress in order to find particular patterns associated to stress tolerance. These studies have highlighted the essential involvement of primary metabolites: sugars, amino acids and Krebs cycle intermediates as direct markers of photosynthetic dysfunction as well as effectors of osmotic readjustment. On the contrary, secondary metabolites are more specific of genera and species and respond to particular stress conditions as antioxidants, Reactive Oxygen Species (ROS) scavengers, coenzymes, UV and excess radiation screen and also as regulatory molecules. In addition, the induction of secondary metabolites by several abiotic stress conditions could also be an effective mechanism of cross-protection against biotic threats, providing a link between abiotic and biotic stress responses. Moreover, the presence/absence and relative accumulation of certain metabolites along with gene expression data provides accurate markers (mQTL or MWAS) for tolerant crop selection in breeding programs.</p></abstract><kwd-group><kwd>cold</kwd><kwd>heat</kwd><kwd>metabolite profiling</kwd><kwd>mQTL</kwd><kwd>omics</kwd><kwd>osmoprotectants</kwd><kwd>oxidative stress</kwd><kwd>salt stress</kwd><kwd>soil flooding</kwd><kwd>water stress</kwd></kwd-group></article-meta></front><floats-group><fig id="f1-ijms-14-04885" position="float"><label>Figure 1</label><caption><p>Multifaceted role of Proline in the responses of plants to stress. Abbreviations in the figure, GST: glutathione <italic>S</italic>-transferase, CAT: catalase, APX: ascorbate peroxidase, PDH: proline deshydrogenase and P5CDH: pyrroline 5′-carboxylate deshydrogenase. Adapted from [<xref ref-type="bibr" rid="b82-ijms-14-04885">82</xref>].</p></caption><graphic xlink:href="ijms-14-04885f1"></graphic></fig><fig id="f2-ijms-14-04885" position="float"><label>Figure 2</label><caption><p>Genome mapping of molecular phenotypes. The levels of organization are depicted in the <italic>x</italic>-axis: from DNA to phenotype. Mapping of the molecular phenotypes onto the genome is achieved by quantitative trait loci (QTL) mapping and genome-wide association (GWAS) techniques. All profiling techniques but metabolome-wide association studies (MWAS) require genetic data. Adapted from [<xref ref-type="bibr" rid="b147-ijms-14-04885">147</xref>].</p></caption><graphic xlink:href="ijms-14-04885f2"></graphic></fig></floats-group></pmc><affiliations><list></list><tree><noCountry><name sortKey="Arbona, Vicent" sort="Arbona, Vicent" uniqKey="Arbona V" first="Vicent" last="Arbona">Vicent Arbona</name><name sortKey="De Ollas, Carlos" sort="De Ollas, Carlos" uniqKey="De Ollas C" first="Carlos" last="De Ollas">Carlos De Ollas</name><name sortKey="G Mez Cadenas, Aurelio" sort="G Mez Cadenas, Aurelio" uniqKey="G Mez Cadenas A" first="Aurelio" last="G Mez-Cadenas">Aurelio G Mez-Cadenas</name><name sortKey="Manzi, Matias" sort="Manzi, Matias" uniqKey="Manzi M" first="Matías" last="Manzi">Matías Manzi</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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