Alternaria section Alternaria: Species, formae speciales or pathotypes?
Identifieur interne : 000649 ( Pmc/Checkpoint ); précédent : 000648; suivant : 000650Alternaria section Alternaria: Species, formae speciales or pathotypes?
Auteurs : J. H. C. Woudenberg [Pays-Bas] ; M. F. Seidl [Pays-Bas] ; J. Z. Groenewald [Pays-Bas] ; M. De Vries [Pays-Bas] ; J. B. Stielow [Pays-Bas] ; B. P. H. J. Thomma [Pays-Bas] ; P. W. Crous [Pays-Bas, Afrique du Sud]Source :
- Studies in Mycology [ 0166-0616 ] ; 2015.
Abstract
The cosmopolitan fungal genus
Url:
DOI: 10.1016/j.simyco.2015.07.001
PubMed: 26951037
PubMed Central: 4774270
Affiliations:
Links toward previous steps (curation, corpus...)
Links to Exploration step
PMC:4774270Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en"><italic>Alternaria</italic>
section <italic>Alternaria</italic>
: Species, <italic>formae speciales</italic>
or pathotypes?</title>
<author><name sortKey="Woudenberg, J H C" sort="Woudenberg, J H C" uniqKey="Woudenberg J" first="J. H. C." last="Woudenberg">J. H. C. Woudenberg</name>
<affiliation wicri:level="1"><nlm:aff id="aff1">CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea>
<wicri:noRegion>3584 CT Utrecht</wicri:noRegion>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="aff2">Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Seidl, M F" sort="Seidl, M F" uniqKey="Seidl M" first="M. F." last="Seidl">M. F. Seidl</name>
<affiliation wicri:level="4"><nlm:aff id="aff2">Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Groenewald, J Z" sort="Groenewald, J Z" uniqKey="Groenewald J" first="J. Z." last="Groenewald">J. Z. Groenewald</name>
<affiliation wicri:level="1"><nlm:aff id="aff1">CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea>
<wicri:noRegion>3584 CT Utrecht</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="De Vries, M" sort="De Vries, M" uniqKey="De Vries M" first="M." last="De Vries">M. De Vries</name>
<affiliation wicri:level="1"><nlm:aff id="aff1">CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea>
<wicri:noRegion>3584 CT Utrecht</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Stielow, J B" sort="Stielow, J B" uniqKey="Stielow J" first="J. B." last="Stielow">J. B. Stielow</name>
<affiliation wicri:level="1"><nlm:aff id="aff1">CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea>
<wicri:noRegion>3584 CT Utrecht</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Thomma, B P H J" sort="Thomma, B P H J" uniqKey="Thomma B" first="B. P. H. J." last="Thomma">B. P. H. J. Thomma</name>
<affiliation wicri:level="4"><nlm:aff id="aff2">Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name>
<affiliation wicri:level="1"><nlm:aff id="aff1">CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea>
<wicri:noRegion>3584 CT Utrecht</wicri:noRegion>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="aff2">Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff3">Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, South Africa</nlm:aff>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002</wicri:regionArea>
<wicri:noRegion>Pretoria 0002</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">26951037</idno>
<idno type="pmc">4774270</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4774270</idno>
<idno type="RBID">PMC:4774270</idno>
<idno type="doi">10.1016/j.simyco.2015.07.001</idno>
<date when="2015">2015</date>
<idno type="wicri:Area/Pmc/Corpus">001307</idno>
<idno type="wicri:Area/Pmc/Curation">001305</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000649</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main"><italic>Alternaria</italic>
section <italic>Alternaria</italic>
: Species, <italic>formae speciales</italic>
or pathotypes?</title>
<author><name sortKey="Woudenberg, J H C" sort="Woudenberg, J H C" uniqKey="Woudenberg J" first="J. H. C." last="Woudenberg">J. H. C. Woudenberg</name>
<affiliation wicri:level="1"><nlm:aff id="aff1">CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea>
<wicri:noRegion>3584 CT Utrecht</wicri:noRegion>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="aff2">Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Seidl, M F" sort="Seidl, M F" uniqKey="Seidl M" first="M. F." last="Seidl">M. F. Seidl</name>
<affiliation wicri:level="4"><nlm:aff id="aff2">Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Groenewald, J Z" sort="Groenewald, J Z" uniqKey="Groenewald J" first="J. Z." last="Groenewald">J. Z. Groenewald</name>
<affiliation wicri:level="1"><nlm:aff id="aff1">CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea>
<wicri:noRegion>3584 CT Utrecht</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="De Vries, M" sort="De Vries, M" uniqKey="De Vries M" first="M." last="De Vries">M. De Vries</name>
<affiliation wicri:level="1"><nlm:aff id="aff1">CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea>
<wicri:noRegion>3584 CT Utrecht</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Stielow, J B" sort="Stielow, J B" uniqKey="Stielow J" first="J. B." last="Stielow">J. B. Stielow</name>
<affiliation wicri:level="1"><nlm:aff id="aff1">CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea>
<wicri:noRegion>3584 CT Utrecht</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Thomma, B P H J" sort="Thomma, B P H J" uniqKey="Thomma B" first="B. P. H. J." last="Thomma">B. P. H. J. Thomma</name>
<affiliation wicri:level="4"><nlm:aff id="aff2">Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name>
<affiliation wicri:level="1"><nlm:aff id="aff1">CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea>
<wicri:noRegion>3584 CT Utrecht</wicri:noRegion>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="aff2">Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff3">Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, South Africa</nlm:aff>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea>Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002</wicri:regionArea>
<wicri:noRegion>Pretoria 0002</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">Studies in Mycology</title>
<idno type="ISSN">0166-0616</idno>
<idno type="eISSN">1872-9797</idno>
<imprint><date when="2015">2015</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>The cosmopolitan fungal genus <italic>Alternaria</italic>
consists of multiple saprophytic and pathogenic species. Based on phylogenetic and morphological studies, the genus is currently divided into 26 sections. <italic>Alternaria</italic>
sect. <italic>Alternaria</italic>
contains most of the small-spored <italic>Alternaria</italic>
species with concatenated conidia, including important plant, human and postharvest pathogens. Species within sect. <italic>Alternaria</italic>
have been mostly described based on morphology and / or host-specificity, yet molecular variation between them is minimal. To investigate whether the described morphospecies within sect. <italic>Alternaria</italic>
are supported by molecular data, whole-genome sequencing of nine <italic>Alternaria</italic>
morphospecies supplemented with transcriptome sequencing of 12 <italic>Alternaria</italic>
morphospecies as well as multi-gene sequencing of 168 <italic>Alternaria</italic>
isolates was performed. The assembled genomes ranged in size from 33.3–35.2 Mb within sect. <italic>Alternaria</italic>
and from 32.0–39.1 Mb for all <italic>Alternaria</italic>
genomes. The number of repetitive sequences differed significantly between the different <italic>Alternaria</italic>
genomes; ranging from 1.4–16.5 %. The repeat content within sect. <italic>Alternaria</italic>
was relatively low with only 1.4–2.7 % of repeats. Whole-genome alignments revealed 96.7–98.2 % genome identity between sect. <italic>Alternaria</italic>
isolates, compared to 85.1–89.3 % genome identity for isolates from other sections to the <italic>A. alternata</italic>
reference genome. Similarly, 1.4–2.8 % and 0.8–1.8 % single nucleotide polymorphisms (SNPs) were observed in genomic and transcriptomic sequences, respectively, between isolates from sect. <italic>Alternaria</italic>
, while the percentage of SNPs found in isolates from different sections compared to the <italic>A. alternata</italic>
reference genome was considerably higher; 8.0–10.3 % and 6.1–8.5 %. The topology of a phylogenetic tree based on the whole-genome and transcriptome reads was congruent with multi-gene phylogenies based on commonly used gene regions. Based on the genome and transcriptome data, a set of core proteins was extracted, and primers were designed on two gene regions with a relatively low degree of conservation within sect. <italic>Alternaria</italic>
(96.8 and 97.3 % conservation). Their potential discriminatory power within sect. <italic>Alternaria</italic>
was tested next to nine commonly used gene regions in sect. <italic>Alternaria</italic>
, namely the SSU, LSU, ITS, <italic>gapdh</italic>
, <italic>rpb2</italic>
, <italic>tef1</italic>
, <italic>Alt a 1</italic>
, <italic>endoPG</italic>
and OPA10-2 gene regions. The phylogenies from the two gene regions with a relatively low conservation, KOG1058 and KOG1077, could not distinguish the described morphospecies within sect. <italic>Alternaria</italic>
more effectively than the phylogenies based on the commonly used gene regions for <italic>Alternaria</italic>
. Based on genome and transcriptome comparisons and molecular phylogenies, <italic>Alternaria</italic>
sect. <italic>Alternaria</italic>
consists of only 11 phylogenetic species and one species complex. Thirty-five morphospecies, which cannot be distinguished based on the multi-gene phylogeny, are synonymised under <italic>A. alternata</italic>
. By providing guidelines for the naming and identification of phylogenetic species in <italic>Alternaria</italic>
sect. <italic>Alternaria</italic>
, this manuscript provides a clear and stable species classification in this section.</p>
</div>
</front>
<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Akagi, Y" uniqKey="Akagi Y">Y. Akagi</name>
</author>
<author><name sortKey="Akamatsu, H" uniqKey="Akamatsu H">H. Akamatsu</name>
</author>
<author><name sortKey="Otani, H" uniqKey="Otani H">H. Otani</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Akamatsu, H" uniqKey="Akamatsu H">H. Akamatsu</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Akimitsu, K" uniqKey="Akimitsu K">K. Akimitsu</name>
</author>
<author><name sortKey="Tsuge, T" uniqKey="Tsuge T">T. Tsuge</name>
</author>
<author><name sortKey="Kodama, M" uniqKey="Kodama M">M. Kodama</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Andrew, M" uniqKey="Andrew M">M. Andrew</name>
</author>
<author><name sortKey="Peever, T L" uniqKey="Peever T">T.L. Peever</name>
</author>
<author><name sortKey="Pryor, B M" uniqKey="Pryor B">B.M. Pryor</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bertels, F" uniqKey="Bertels F">F. Bertels</name>
</author>
<author><name sortKey="Silander, O K" uniqKey="Silander O">O.K. Silander</name>
</author>
<author><name sortKey="Pachkov, M" uniqKey="Pachkov M">M. Pachkov</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Coates, L" uniqKey="Coates L">L. Coates</name>
</author>
<author><name sortKey="Johnson, G" uniqKey="Johnson G">G. Johnson</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Crous, P W" uniqKey="Crous P">P.W. Crous</name>
</author>
<author><name sortKey="Verkley, G J M" uniqKey="Verkley G">G.J.M. Verkley</name>
</author>
<author><name sortKey="Groenwald, J Z" uniqKey="Groenwald J">J.Z. Groenwald</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Depristo, M A" uniqKey="Depristo M">M.A. DePristo</name>
</author>
<author><name sortKey="Banks, E" uniqKey="Banks E">E. Banks</name>
</author>
<author><name sortKey="Poplin, R" uniqKey="Poplin R">R. Poplin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Grogan, R G" uniqKey="Grogan R">R.G. Grogan</name>
</author>
<author><name sortKey="Kimble, K A" uniqKey="Kimble K">K.A. Kimble</name>
</author>
<author><name sortKey="Misaghi, I" uniqKey="Misaghi I">I. Misaghi</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Grum Grzhimaylo, A A" uniqKey="Grum Grzhimaylo A">A.A. Grum-Grzhimaylo</name>
</author>
<author><name sortKey="Georgieva, M L" uniqKey="Georgieva M">M.L. Georgieva</name>
</author>
<author><name sortKey="Bondarenko, S A" uniqKey="Bondarenko S">S.A. Bondarenko</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Harimoto, Y" uniqKey="Harimoto Y">Y. Harimoto</name>
</author>
<author><name sortKey="Hatta, R" uniqKey="Hatta R">R. Hatta</name>
</author>
<author><name sortKey="Kodama, M" uniqKey="Kodama M">M. Kodama</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Harimoto, Y" uniqKey="Harimoto Y">Y. Harimoto</name>
</author>
<author><name sortKey="Tanaka, T" uniqKey="Tanaka T">T. Tanaka</name>
</author>
<author><name sortKey="Kodama, M" uniqKey="Kodama M">M. Kodama</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Harteveld, D O C" uniqKey="Harteveld D">D.O.C. Harteveld</name>
</author>
<author><name sortKey="Akinsanmi, O A" uniqKey="Akinsanmi O">O.A. Akinsanmi</name>
</author>
<author><name sortKey="Becker, M F" uniqKey="Becker M">M.F. Becker</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Harteveld, D O C" uniqKey="Harteveld D">D.O.C. Harteveld</name>
</author>
<author><name sortKey="Akinsanmi, O A" uniqKey="Akinsanmi O">O.A. Akinsanmi</name>
</author>
<author><name sortKey="Drenth, A" uniqKey="Drenth A">A. Drenth</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hatta, R" uniqKey="Hatta R">R. Hatta</name>
</author>
<author><name sortKey="Ito, K" uniqKey="Ito K">K. Ito</name>
</author>
<author><name sortKey="Hosaki, Y" uniqKey="Hosaki Y">Y. Hosaki</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hu, J" uniqKey="Hu J">J. Hu</name>
</author>
<author><name sortKey="Chen, C" uniqKey="Chen C">C. Chen</name>
</author>
<author><name sortKey="Peever, T" uniqKey="Peever T">T. Peever</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hu, W" uniqKey="Hu W">W. Hu</name>
</author>
<author><name sortKey="Ran, Y" uniqKey="Ran Y">Y. Ran</name>
</author>
<author><name sortKey="Zhuang, K" uniqKey="Zhuang K">K. Zhuang</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Huelsenbeck, J P" uniqKey="Huelsenbeck J">J.P. Huelsenbeck</name>
</author>
<author><name sortKey="Ronquist, F" uniqKey="Ronquist F">F. Ronquist</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Johnson, R D" uniqKey="Johnson R">R.D. Johnson</name>
</author>
<author><name sortKey="Johnson, L" uniqKey="Johnson L">L. Johnson</name>
</author>
<author><name sortKey="Kohmoto, K" uniqKey="Kohmoto K">K. Kohmoto</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Johnson, L J" uniqKey="Johnson L">L.J. Johnson</name>
</author>
<author><name sortKey="Johnson, R D" uniqKey="Johnson R">R.D. Johnson</name>
</author>
<author><name sortKey="Akamatsu, H" uniqKey="Akamatsu H">H. Akamatsu</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Joly, P" uniqKey="Joly P">P. Joly</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Jurka, J" uniqKey="Jurka J">J. Jurka</name>
</author>
<author><name sortKey="Kapitonov, V V" uniqKey="Kapitonov V">V.V. Kapitonov</name>
</author>
<author><name sortKey="Pavlicek, A" uniqKey="Pavlicek A">A. Pavlicek</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kang, J C" uniqKey="Kang J">J.-C. Kang</name>
</author>
<author><name sortKey="Crous, P W" uniqKey="Crous P">P.W. Crous</name>
</author>
<author><name sortKey="Mchau, G R A" uniqKey="Mchau G">G.R.A. Mchau</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kurtz, S" uniqKey="Kurtz S">S. Kurtz</name>
</author>
<author><name sortKey="Phillippy, A" uniqKey="Phillippy A">A. Phillippy</name>
</author>
<author><name sortKey="Delcher, A L" uniqKey="Delcher A">A.L. Delcher</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kurup, V P" uniqKey="Kurup V">V.P. Kurup</name>
</author>
<author><name sortKey="Shen, H D" uniqKey="Shen H">H.-D. Shen</name>
</author>
<author><name sortKey="Banerjee, B" uniqKey="Banerjee B">B. Banerjee</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lawrence, D P" uniqKey="Lawrence D">D.P. Lawrence</name>
</author>
<author><name sortKey="Gannibal, P B" uniqKey="Gannibal P">P.B. Gannibal</name>
</author>
<author><name sortKey="Peever, T L" uniqKey="Peever T">T.L. Peever</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Li, H" uniqKey="Li H">H. Li</name>
</author>
<author><name sortKey="Durbin, R" uniqKey="Durbin R">R. Durbin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Masanuka, A" uniqKey="Masanuka A">A. Masanuka</name>
</author>
<author><name sortKey="Ohtani, K" uniqKey="Ohtani K">K. Ohtani</name>
</author>
<author><name sortKey="Peever, T L" uniqKey="Peever T">T.L. Peever</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Nasehi, A" uniqKey="Nasehi A">A. Nasehi</name>
</author>
<author><name sortKey="Kadir, J B" uniqKey="Kadir J">J.B. Kadir</name>
</author>
<author><name sortKey="Ashtiani, F A" uniqKey="Ashtiani F">F.A. Ashtiani</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Neergaard, P" uniqKey="Neergaard P">P. Neergaard</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Nishimura, S" uniqKey="Nishimura S">S. Nishimura</name>
</author>
<author><name sortKey="Kohmoto, K" uniqKey="Kohmoto K">K. Kohmoto</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Page, R D M" uniqKey="Page R">R.D.M. Page</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Parra, G" uniqKey="Parra G">G. Parra</name>
</author>
<author><name sortKey="Bradnam, K" uniqKey="Bradnam K">K. Bradnam</name>
</author>
<author><name sortKey="Korf, I" uniqKey="Korf I">I. Korf</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Peever, T L" uniqKey="Peever T">T.L. Peever</name>
</author>
<author><name sortKey="Su, G" uniqKey="Su G">G. Su</name>
</author>
<author><name sortKey="Carpenter Boggs, L" uniqKey="Carpenter Boggs L">L. Carpenter-Boggs</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rambaut, A" uniqKey="Rambaut A">A. Rambaut</name>
</author>
<author><name sortKey="Drummond, A J" uniqKey="Drummond A">A.J. Drummond</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Roberts, R G" uniqKey="Roberts R">R.G. Roberts</name>
</author>
<author><name sortKey="Bischoff, J F" uniqKey="Bischoff J">J.F. Bischoff</name>
</author>
<author><name sortKey="Reymond, S T" uniqKey="Reymond S">S.T. Reymond</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Roberts, R G" uniqKey="Roberts R">R.G. Roberts</name>
</author>
<author><name sortKey="Reymond, S T" uniqKey="Reymond S">S.T. Reymond</name>
</author>
<author><name sortKey="Andersen, B" uniqKey="Andersen B">B. Andersen</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Ronquist, F" uniqKey="Ronquist F">F. Ronquist</name>
</author>
<author><name sortKey="Huelsenbeck, J P" uniqKey="Huelsenbeck J">J.P. Huelsenbeck</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rotem, J" uniqKey="Rotem J">J. Rotem</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rotondo, F" uniqKey="Rotondo F">F. Rotondo</name>
</author>
<author><name sortKey="Collina, M" uniqKey="Collina M">M. Collina</name>
</author>
<author><name sortKey="Brunelli, A" uniqKey="Brunelli A">A. Brunelli</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Salamiah" uniqKey="Salamiah">Salamiah</name>
</author>
<author><name sortKey="Akamatsu, H" uniqKey="Akamatsu H">H. Akamatsu</name>
</author>
<author><name sortKey="Fukumasa Nakai, Y" uniqKey="Fukumasa Nakai Y">Y. Fukumasa-Nakai</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Serdani, M" uniqKey="Serdani M">M. Serdani</name>
</author>
<author><name sortKey="Kang, J C" uniqKey="Kang J">J.-C. Kang</name>
</author>
<author><name sortKey="Andersen, B" uniqKey="Andersen B">B. Andersen</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Shoaib, A" uniqKey="Shoaib A">A. Shoaib</name>
</author>
<author><name sortKey="Akhtar, N" uniqKey="Akhtar N">N. Akhtar</name>
</author>
<author><name sortKey="Akhtar, S" uniqKey="Akhtar S">S. Akhtar</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Simmons, E G" uniqKey="Simmons E">E.G. Simmons</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Simmons, E G" uniqKey="Simmons E">E.G. Simmons</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Simmons, E G" uniqKey="Simmons E">E.G. Simmons</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Smit, A F A" uniqKey="Smit A">A.F.A. Smit</name>
</author>
<author><name sortKey="Hubley, R" uniqKey="Hubley R">R. Hubley</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Smit, A F A" uniqKey="Smit A">A.F.A. Smit</name>
</author>
<author><name sortKey="Hubley, R" uniqKey="Hubley R">R. Hubley</name>
</author>
<author><name sortKey="Green, P" uniqKey="Green P">P. Green</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Somma, S" uniqKey="Somma S">S. Somma</name>
</author>
<author><name sortKey="Pose, G" uniqKey="Pose G">G. Pose</name>
</author>
<author><name sortKey="Pardo, A" uniqKey="Pardo A">A. Pardo</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Spatafora, J" uniqKey="Spatafora J">J. Spatafora</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Stamatakis, A" uniqKey="Stamatakis A">A. Stamatakis</name>
</author>
<author><name sortKey="Alachiotis, N" uniqKey="Alachiotis N">N. Alachiotis</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Stewart, J E" uniqKey="Stewart J">J.E. Stewart</name>
</author>
<author><name sortKey="Andrew, M" uniqKey="Andrew M">M. Andrew</name>
</author>
<author><name sortKey="Bao, X" uniqKey="Bao X">X. Bao</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Stewart, J E" uniqKey="Stewart J">J.E. Stewart</name>
</author>
<author><name sortKey="Thomas, K A" uniqKey="Thomas K">K.A. Thomas</name>
</author>
<author><name sortKey="Lawrence, C B" uniqKey="Lawrence C">C.B. Lawrence</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Stewart, J E" uniqKey="Stewart J">J.E. Stewart</name>
</author>
<author><name sortKey="Timmer, L W" uniqKey="Timmer L">L.W. Timmer</name>
</author>
<author><name sortKey="Lawrence, C B" uniqKey="Lawrence C">C.B. Lawrence</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Tanaka, A" uniqKey="Tanaka A">A. Tanaka</name>
</author>
<author><name sortKey="Tsuge, T" uniqKey="Tsuge T">T. Tsuge</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Tao, W C" uniqKey="Tao W">W.-C. Tao</name>
</author>
<author><name sortKey="Zhang, W" uniqKey="Zhang W">W. Zhang</name>
</author>
<author><name sortKey="Yan, J Y" uniqKey="Yan J">J.-Y. Yan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Tritt, A" uniqKey="Tritt A">A. Tritt</name>
</author>
<author><name sortKey="Eisen, J A" uniqKey="Eisen J">J.A. Eisen</name>
</author>
<author><name sortKey="Facciotti, M T" uniqKey="Facciotti M">M.T. Facciotti</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Vakalounakis, D J" uniqKey="Vakalounakis D">D.J. Vakalounakis</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Woudenberg, J H C" uniqKey="Woudenberg J">J.H.C. Woudenberg</name>
</author>
<author><name sortKey="Groenewald, J Z" uniqKey="Groenewald J">J.Z. Groenewald</name>
</author>
<author><name sortKey="Binder, M" uniqKey="Binder M">M. Binder</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Woudenberg, J H C" uniqKey="Woudenberg J">J.H.C. Woudenberg</name>
</author>
<author><name sortKey="Truter, M" uniqKey="Truter M">M. Truter</name>
</author>
<author><name sortKey="Groenewald, J Z" uniqKey="Groenewald J">J.Z. Groenewald</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Yoon, J T" uniqKey="Yoon J">J.T. Yoon</name>
</author>
<author><name sortKey="Lee, J T" uniqKey="Lee J">J.T. Lee</name>
</author>
<author><name sortKey="Park, S D" uniqKey="Park S">S.D. Park</name>
</author>
</analytic>
</biblStruct>
</listBibl>
</div1>
</back>
</TEI>
<pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Stud Mycol</journal-id>
<journal-id journal-id-type="iso-abbrev">Stud. Mycol</journal-id>
<journal-title-group><journal-title>Studies in Mycology</journal-title>
</journal-title-group>
<issn pub-type="ppub">0166-0616</issn>
<issn pub-type="epub">1872-9797</issn>
<publisher><publisher-name>CBS Fungal Biodiversity Centre</publisher-name>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">26951037</article-id>
<article-id pub-id-type="pmc">4774270</article-id>
<article-id pub-id-type="publisher-id">S0166-0616(15)00012-3</article-id>
<article-id pub-id-type="doi">10.1016/j.simyco.2015.07.001</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Research Paper</subject>
</subj-group>
</article-categories>
<title-group><article-title><italic>Alternaria</italic>
section <italic>Alternaria</italic>
: Species, <italic>formae speciales</italic>
or pathotypes?</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Woudenberg</surname>
<given-names>J.H.C.</given-names>
</name>
<email>j.woudenberg@cbs.knaw.nl</email>
<xref rid="aff1" ref-type="aff">1</xref>
<xref rid="aff2" ref-type="aff">2</xref>
<xref rid="cor1" ref-type="corresp">∗</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Seidl</surname>
<given-names>M.F.</given-names>
</name>
<xref rid="aff2" ref-type="aff">2</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Groenewald</surname>
<given-names>J.Z.</given-names>
</name>
<xref rid="aff1" ref-type="aff">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>de Vries</surname>
<given-names>M.</given-names>
</name>
<xref rid="aff1" ref-type="aff">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Stielow</surname>
<given-names>J.B.</given-names>
</name>
<xref rid="aff1" ref-type="aff">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Thomma</surname>
<given-names>B.P.H.J.</given-names>
</name>
<xref rid="aff2" ref-type="aff">2</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Crous</surname>
<given-names>P.W.</given-names>
</name>
<xref rid="aff1" ref-type="aff">1</xref>
<xref rid="aff2" ref-type="aff">2</xref>
<xref rid="aff3" ref-type="aff">3</xref>
</contrib>
</contrib-group>
<aff id="aff1"><label>1</label>
CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</aff>
<aff id="aff2"><label>2</label>
Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</aff>
<aff id="aff3"><label>3</label>
Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, South Africa</aff>
<author-notes><corresp id="cor1"><label>∗</label>
<italic>Correspondence</italic>
: J.H.C. Woudenberg <email>j.woudenberg@cbs.knaw.nl</email>
</corresp>
</author-notes>
<pub-date pub-type="pmc-release"><day>25</day>
<month>8</month>
<year>2015</year>
</pub-date>
<pmc-comment> PMC Release delay is 0 months and 0 days and was based on .</pmc-comment>
<pub-date pub-type="ppub"><month>9</month>
<year>2015</year>
</pub-date>
<pub-date pub-type="epub"><day>25</day>
<month>8</month>
<year>2015</year>
</pub-date>
<volume>82</volume>
<fpage>1</fpage>
<lpage>21</lpage>
<permissions><copyright-statement>Copyright © 2015, CBS-KNAW Fungal Biodiversity Centre. Production and hosting by ELSEVIER B.V.</copyright-statement>
<copyright-year>2015</copyright-year>
<copyright-holder>CBS-KNAW Fungal Biodiversity Centre</copyright-holder>
<license license-type="CC BY-NC-ND" xlink:href="http://creativecommons.org/licenses/by-nc-nd/4.0/"><license-p>This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).</license-p>
</license>
</permissions>
<abstract><p>The cosmopolitan fungal genus <italic>Alternaria</italic>
consists of multiple saprophytic and pathogenic species. Based on phylogenetic and morphological studies, the genus is currently divided into 26 sections. <italic>Alternaria</italic>
sect. <italic>Alternaria</italic>
contains most of the small-spored <italic>Alternaria</italic>
species with concatenated conidia, including important plant, human and postharvest pathogens. Species within sect. <italic>Alternaria</italic>
have been mostly described based on morphology and / or host-specificity, yet molecular variation between them is minimal. To investigate whether the described morphospecies within sect. <italic>Alternaria</italic>
are supported by molecular data, whole-genome sequencing of nine <italic>Alternaria</italic>
morphospecies supplemented with transcriptome sequencing of 12 <italic>Alternaria</italic>
morphospecies as well as multi-gene sequencing of 168 <italic>Alternaria</italic>
isolates was performed. The assembled genomes ranged in size from 33.3–35.2 Mb within sect. <italic>Alternaria</italic>
and from 32.0–39.1 Mb for all <italic>Alternaria</italic>
genomes. The number of repetitive sequences differed significantly between the different <italic>Alternaria</italic>
genomes; ranging from 1.4–16.5 %. The repeat content within sect. <italic>Alternaria</italic>
was relatively low with only 1.4–2.7 % of repeats. Whole-genome alignments revealed 96.7–98.2 % genome identity between sect. <italic>Alternaria</italic>
isolates, compared to 85.1–89.3 % genome identity for isolates from other sections to the <italic>A. alternata</italic>
reference genome. Similarly, 1.4–2.8 % and 0.8–1.8 % single nucleotide polymorphisms (SNPs) were observed in genomic and transcriptomic sequences, respectively, between isolates from sect. <italic>Alternaria</italic>
, while the percentage of SNPs found in isolates from different sections compared to the <italic>A. alternata</italic>
reference genome was considerably higher; 8.0–10.3 % and 6.1–8.5 %. The topology of a phylogenetic tree based on the whole-genome and transcriptome reads was congruent with multi-gene phylogenies based on commonly used gene regions. Based on the genome and transcriptome data, a set of core proteins was extracted, and primers were designed on two gene regions with a relatively low degree of conservation within sect. <italic>Alternaria</italic>
(96.8 and 97.3 % conservation). Their potential discriminatory power within sect. <italic>Alternaria</italic>
was tested next to nine commonly used gene regions in sect. <italic>Alternaria</italic>
, namely the SSU, LSU, ITS, <italic>gapdh</italic>
, <italic>rpb2</italic>
, <italic>tef1</italic>
, <italic>Alt a 1</italic>
, <italic>endoPG</italic>
and OPA10-2 gene regions. The phylogenies from the two gene regions with a relatively low conservation, KOG1058 and KOG1077, could not distinguish the described morphospecies within sect. <italic>Alternaria</italic>
more effectively than the phylogenies based on the commonly used gene regions for <italic>Alternaria</italic>
. Based on genome and transcriptome comparisons and molecular phylogenies, <italic>Alternaria</italic>
sect. <italic>Alternaria</italic>
consists of only 11 phylogenetic species and one species complex. Thirty-five morphospecies, which cannot be distinguished based on the multi-gene phylogeny, are synonymised under <italic>A. alternata</italic>
. By providing guidelines for the naming and identification of phylogenetic species in <italic>Alternaria</italic>
sect. <italic>Alternaria</italic>
, this manuscript provides a clear and stable species classification in this section.</p>
</abstract>
<kwd-group><title>Key words</title>
<kwd><italic>Alternaria alternata</italic>
</kwd>
<kwd><italic>Alternaria arborescens</italic>
species complex</kwd>
<kwd>Multi-gene phylogeny</kwd>
<kwd>Transcriptome sequencing</kwd>
<kwd>Whole-genome sequencing</kwd>
</kwd-group>
</article-meta>
</front>
<floats-group><fig id="fig1"><label>Fig. 1</label>
<caption><p>PhyML tree based on the whole-genome and transcriptome reads of 15 <italic>Alternaria</italic>
species using REALPHY. The bootstrap support values are given at the nodes; thickened lines indicate a fully supported node. The grey box represents species which are now synonymised under <italic>A. alternata</italic>
. The tree was rooted to <italic>A. papaveraceae</italic>
(CBS 116607).</p>
</caption>
<graphic xlink:href="gr1"></graphic>
</fig>
<fig id="fig2"><label>Fig. 2</label>
<caption><p>Bayesian 50 % majority rule consensus tree based on the ITS, <italic>gapdh</italic>
, <italic>tef1</italic>
, <italic>rpb2</italic>
, <italic>Alt a 1</italic>
, <italic>endoPG</italic>
and OPA10-2 sequences of 168 <italic>Alternaria</italic>
strains. The Bayesian posterior probabilities >0.75 (PP) and RAxML bootstrap support values >65 (ML) are given at the nodes (PP / ML). Thickened lines indicate a PP of 1.0 and ML of 100. Species names between parentheses represent synonymised species names. Ex-type strains are indicated with T and representative strains with R. The ex-type strains of here recognised species are printed in <bold>bold</bold>
face. The tree was rooted to <italic>A. alternantherae</italic>
(CBS 124392).</p>
</caption>
<graphic xlink:href="gr2"></graphic>
</fig>
<fig id="fig3"><label>Fig. 3</label>
<caption><p><italic>Alternaria burnsii</italic>
conidia and conidiophores. A–B. CBS 108.27. C–D. CBS 879.95. E–F. CBS 118816. G–H. CBS 118817. Scale bars = 10 μm.</p>
</caption>
<graphic xlink:href="gr3"></graphic>
</fig>
<fig id="fig4"><label>Fig. 4</label>
<caption><p><italic>Alternaria gossypina</italic>
conidia and conidiophores. A–B. CBS 100.23. C–D. CBS 104.32. E–F. CBS 107.36. G–H. CBS 102597. Scale bars = 10 μm.</p>
</caption>
<graphic xlink:href="gr4"></graphic>
</fig>
<fig id="fig5"><label>Fig. 5</label>
<caption><p><italic>Alternaria arborescens</italic>
species complex conidia and conidiophores. A–B. <italic>A. geophila</italic>
CBS 101.13. C–D. <italic>A. arborescens</italic>
CBS 102605. E–F. <italic>A. cerealis</italic>
CBS 119544. G–H. <italic>A. senecionicola</italic>
CBS 119545. Scale bars = 10 μm.</p>
</caption>
<graphic xlink:href="gr5"></graphic>
</fig>
<table-wrap id="tbl1" position="float"><label>Table 1</label>
<caption><p>Isolates used in this study and their GenBank accession numbers.</p>
</caption>
<table frame="hsides" rules="groups"><thead><tr><th>Species name and strain number<xref rid="tbl1fn1" ref-type="table-fn">1</xref>
<sup>,</sup>
<xref rid="tbl1fn2" ref-type="table-fn">2</xref>
</th>
<th>Locality, host / substrate</th>
<th colspan="11">GenBank accession numbers<xref rid="tbl1fn3" ref-type="table-fn">3</xref>
<hr></hr>
</th>
</tr>
<tr><th>SSU</th>
<th>LSU</th>
<th>ITS</th>
<th><italic>gapdh</italic>
</th>
<th><italic>tef1</italic>
</th>
<th><italic>rpb2</italic>
</th>
<th><italic>Alt a 1</italic>
</th>
<th><italic>endoPG</italic>
</th>
<th>OPA10-2</th>
<th>KOG1058</th>
<th>KOG1077</th>
</tr>
</thead>
<tbody><tr><td colspan="13"><bold><italic>Alternaria alstroemeriae</italic>
</bold>
</td>
</tr>
<tr><td>CBS 118808; E.G.S. 50.116<sup>R</sup>
</td>
<td>USA, <italic>Alstroemeria</italic>
sp.</td>
<td>KP124917</td>
<td>KP124447</td>
<td>KP124296</td>
<td>KP124153</td>
<td>KP125071</td>
<td>KP124764</td>
<td>KP123845</td>
<td>KP123993</td>
<td>KP124601</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 118809; E.G.S. 52.068; MAFF 1219<sup>T</sup>
</td>
<td>Australia, <italic>Alstroemeria</italic>
sp.</td>
<td>KP124918</td>
<td>KP124448</td>
<td>KP124297</td>
<td>KP124154</td>
<td>KP125072</td>
<td>KP124765</td>
<td>np</td>
<td>KP123994</td>
<td>KP124602</td>
<td>KP125226</td>
<td>np</td>
</tr>
<tr><td colspan="13"><bold><italic>Alternaria alternantherae</italic>
</bold>
</td>
</tr>
<tr><td>CBS 124392; HSAUP2798</td>
<td>China, <italic>Solanum melongena</italic>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584506" id="interref9000"><bold>KC584506</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584251" id="interref9005"><bold>KC584251</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584179" id="interref9010"><bold>KC584179</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584096" id="interref9015"><bold>KC584096</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584633" id="interref9020"><bold>KC584633</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584374" id="interref9025"><bold>KC584374</bold>
</ext-link>
</td>
<td>KP123846</td>
<td>np</td>
<td>np</td>
<td>KP125227</td>
<td>KP125275</td>
</tr>
<tr><td colspan="13"><bold><italic>Alternaria alternata</italic>
</bold>
</td>
</tr>
<tr><td>CBS 106.24; E.G.S. 38.029; ATCC 13963 (<italic>A. mali</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Malus sylvestris</italic>
</td>
<td>KP124919</td>
<td>KP124449</td>
<td>KP124298</td>
<td>KP124155</td>
<td>KP125073</td>
<td>KP124766</td>
<td>KP123847</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY295020" id="intref0075"><bold>AY295020</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ800620" id="interref8000"><bold>JQ800620</bold>
</ext-link>
</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 104.26</td>
<td>Unknown, unknown</td>
<td>KP124920</td>
<td>KP124450</td>
<td>KP124299</td>
<td>KP124156</td>
<td>KP125074</td>
<td>KP124767</td>
<td>KP123848</td>
<td>KP123995</td>
<td>KP124603</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 107.27; ATCC 24463; QM 1736 (<italic>A. citri</italic>
)</td>
<td>USA, <italic>Citrus limonium</italic>
</td>
<td>KP124921</td>
<td>KP124451</td>
<td>KP124300</td>
<td>KP124157</td>
<td>KP125075</td>
<td>KP124768</td>
<td>KP123849</td>
<td>KP123996</td>
<td>KP124604</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 154.31; IHEM 3320</td>
<td>USA, <italic>Staphylea trifolia</italic>
</td>
<td>KP124922</td>
<td>KP124452</td>
<td>KP124301</td>
<td>KP124158</td>
<td>KP125076</td>
<td>KP124769</td>
<td>KP123851</td>
<td>KP123998</td>
<td>KP124606</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 103.33; E.G.S. 35.182; IHEM 3319 (<italic>A. soliaegyptiaca</italic>
<sup>T</sup>
)</td>
<td>Egypt, soil</td>
<td>KP124923</td>
<td>KP124453</td>
<td>KP124302</td>
<td>KP124159</td>
<td>KP125077</td>
<td>KP124770</td>
<td>KP123852</td>
<td>KP123999</td>
<td>KP124607</td>
<td>KP125228</td>
<td>KP125276</td>
</tr>
<tr><td>CBS 106.34; E.G.S. 06.198; DSM 62019; MUCL 10030 (<italic>A. lini</italic>
<sup>T</sup>
)</td>
<td>Unknown, <italic>Linum usitatissimum</italic>
</td>
<td>KP124924</td>
<td>KP124454</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:Y17071" id="intref0080"><bold>Y17071</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ646308" id="interref8005"><bold>JQ646308</bold>
</ext-link>
</td>
<td>KP125078</td>
<td>KP124771</td>
<td>KP123853</td>
<td>KP124000</td>
<td>KP124608</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 117.44; E.G.S. 06.190; VKM F-1870 (<italic>A. godetiae</italic>
<sup>T</sup>
)</td>
<td>Denmark, <italic>Godetia</italic>
sp.</td>
<td>KP124925</td>
<td>KP124455</td>
<td>KP124303</td>
<td>KP124160</td>
<td>KP125079</td>
<td>KP124772</td>
<td>KP123854</td>
<td>KP124001</td>
<td>KP124609</td>
<td>KP125229</td>
<td>KP125277</td>
</tr>
<tr><td>CBS 102.47; E.G.S. 02.062 (<italic>A. citri</italic>
<sup>R</sup>
)</td>
<td>USA, <italic>Citrus sinensis</italic>
</td>
<td>KP124926</td>
<td>KP124456</td>
<td>KP124304</td>
<td>KP124161</td>
<td>KP125080</td>
<td>KP124773</td>
<td>KP123855</td>
<td>KP124002</td>
<td>KP124610</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 174.52; E.G.S. 39.1613; IMI 068086; QM 1278</td>
<td>USA, <italic>Anemone occidentalis</italic>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584578" id="interref9030"><bold>KC584578</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:DQ678068" id="interref8000a"><bold>DQ678068</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584228" id="interref9035"><bold>KC584228</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584152" id="interref9040"><bold>KC584152</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584704" id="interref9045"><bold>KC584704</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:DQ677964" id="interref8005a"><bold>DQ677964</bold>
</ext-link>
</td>
<td>KP123856</td>
<td>KP124003</td>
<td>KP124611</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 175.52; E.G.S. 35.1619; IMI 068085; QM 1277</td>
<td>USA, <italic>Juncus mertensianus</italic>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584577" id="interref9050"><bold>KC584577</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584320" id="interref9055"><bold>KC584320</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584227" id="interref9060"><bold>KC584227</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584151" id="interref9065"><bold>KC584151</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584703" id="interref9070"><bold>KC584703</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584445" id="interref9075"><bold>KC584445</bold>
</ext-link>
</td>
<td>KP123857</td>
<td>KP124004</td>
<td>KP124612</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 107.53; DSM 3187; IFO 5778 (<italic>A. kikuchiana</italic>
)</td>
<td>Japan, <italic>Pyrus pyrifolia</italic>
</td>
<td>KP124927</td>
<td>KP124457</td>
<td>KP124305</td>
<td>KP124162</td>
<td>KP125081</td>
<td>KP124774</td>
<td>KP123858</td>
<td>KP124005</td>
<td>KP124613</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 686.68; LCP 1988 (<italic>A. tenuissima</italic>
)</td>
<td>Sahara, desert sand</td>
<td>KP124928</td>
<td>KP124458</td>
<td>KP124306</td>
<td>KP124163</td>
<td>KP125082</td>
<td>KP124775</td>
<td>KP123859</td>
<td>KP124006</td>
<td>KP124614</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 826.68; IMI 265857 (<italic>A. nobilis</italic>
)</td>
<td>Germany, <italic>Lolium</italic>
sp.</td>
<td>KP124929</td>
<td>KP124459</td>
<td>KP124307</td>
<td>KP124164</td>
<td>KP125083</td>
<td>KP124776</td>
<td>KP123860</td>
<td>KP124007</td>
<td>np</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 612.72; DSM 62012 (<italic>A. cinerariae</italic>
)</td>
<td>Germany, <italic>Senecio cineraria</italic>
</td>
<td>KP124930</td>
<td>KP124460</td>
<td>KP124308</td>
<td>KP124165</td>
<td>KP125084</td>
<td>KP124777</td>
<td>KP123861</td>
<td>KP124008</td>
<td>KP124615</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 795.72; ATCC 24127; IHEM 3789</td>
<td>USA, <italic>Plantago aristida</italic>
</td>
<td>KP124931</td>
<td>KP124461</td>
<td>KP124309</td>
<td>KP124166</td>
<td>KP125085</td>
<td>KP124778</td>
<td>KP123862</td>
<td>KP124009</td>
<td>KP124616</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 198.74 (<italic>A. chlamydospora</italic>
)</td>
<td>Kuwait, soil</td>
<td>KP124932</td>
<td>KP124462</td>
<td>KP124310</td>
<td>KP124167</td>
<td>KP125086</td>
<td>np</td>
<td>KP123863</td>
<td>KP124010</td>
<td>KP124617</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 267.77 (<italic>A. citri</italic>
)</td>
<td>USA, <italic>Citrus paradisi</italic>
</td>
<td>KP124933</td>
<td>KP124463</td>
<td>KP124311</td>
<td>KP124168</td>
<td>KP125087</td>
<td>KP124779</td>
<td>KP123864</td>
<td>KP124011</td>
<td>KP124618</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 603.78; E.G.S. 30.134; QM 9553</td>
<td>USA, air</td>
<td>KP124934</td>
<td>KP124464</td>
<td>KP124312</td>
<td>KP124169</td>
<td>KP125088</td>
<td>KP124780</td>
<td>KP123865</td>
<td>KP124012</td>
<td>KP124619</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 175.80 (<italic>A. septorioides</italic>
)</td>
<td>Italy, unknown</td>
<td>KP124935</td>
<td>KP124465</td>
<td>KP124313</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ646324" id="interref8010"><bold>JQ646324</bold>
</ext-link>
</td>
<td>KP125089</td>
<td>KP124781</td>
<td>KP123866</td>
<td>KP124013</td>
<td>KP124620</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 192.81 (<italic>A. citri</italic>
)</td>
<td>Egypt, <italic>Citrus sinensis</italic>
</td>
<td>KP124936</td>
<td>KP124466</td>
<td>KP124314</td>
<td>KP124170</td>
<td>KP125090</td>
<td>KP124782</td>
<td>KP123867</td>
<td>KP124014</td>
<td>KP124621</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 620.83; ATCC 15052 (<italic>A. tenuissima</italic>
)</td>
<td>USA, <italic>Nicotiana tabacum</italic>
</td>
<td>KP124937</td>
<td>KP124467</td>
<td>KP124315</td>
<td>KP124171</td>
<td>KP125091</td>
<td>KP124783</td>
<td>KP123868</td>
<td>KP124015</td>
<td>KP124622</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 194.86; E.G.S. 04.090; QM 1347 (<italic>A. pulvinifungicola</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Quercus</italic>
sp.</td>
<td>KP124938</td>
<td>KP124468</td>
<td>KP124316</td>
<td>KP124172</td>
<td>KP125092</td>
<td>KP124784</td>
<td>KP123869</td>
<td>KP124016</td>
<td>KP124623</td>
<td>KP125230</td>
<td>KP125278</td>
</tr>
<tr><td>CBS 195.86; E.G.S. 36.172; DAOM 185214 (<italic>A. angustiovoidea</italic>
<sup>T</sup>
)</td>
<td>Canada, <italic>Euphorbia esula</italic>
</td>
<td>KP124939</td>
<td>KP124469</td>
<td>KP124317</td>
<td>KP124173</td>
<td>KP125093</td>
<td>KP124785</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ646398" id="interref8015"><bold>JQ646398</bold>
</ext-link>
</td>
<td>KP124017</td>
<td>KP124624</td>
<td>KP125231</td>
<td>KP125279</td>
</tr>
<tr><td>CBS 447.86 (<italic>A. malvae</italic>
)</td>
<td>Marocco, <italic>Malva</italic>
sp.</td>
<td>KP124940</td>
<td>KP124470</td>
<td>KP124318</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ646314" id="interref8020"><bold>JQ646314</bold>
</ext-link>
</td>
<td>KP125094</td>
<td>KP124786</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ646397" id="interref8025"><bold>JQ646397</bold>
</ext-link>
</td>
<td>KP124018</td>
<td>KP124625</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 479.90; E.G.S. 29.028 (<italic>A. pellucida</italic>
<sup>T</sup>
)</td>
<td>Japan, <italic>Citrus unshiu</italic>
</td>
<td>KP124941</td>
<td>KP124471</td>
<td>KP124319</td>
<td>KP124174</td>
<td>KP125095</td>
<td>KP124787</td>
<td>KP123870</td>
<td>KP124019</td>
<td>KP124626</td>
<td>KP125232</td>
<td>KP125280</td>
</tr>
<tr><td>CBS 595.93 (<italic>A. rhadina</italic>
<sup>T</sup>
)</td>
<td>Japan, <italic>Pyrus pyrifolia</italic>
</td>
<td>KP124942</td>
<td>KP124472</td>
<td>KP124320</td>
<td>KP124175</td>
<td>KP125096</td>
<td>KP124788</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ646399" id="interref8030"><bold>JQ646399</bold>
</ext-link>
</td>
<td>KP124020</td>
<td>KP124627</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 877.95 (<italic>A. tenuissima</italic>
)</td>
<td>India, human, sinusitis</td>
<td>KP124943</td>
<td>KP124473</td>
<td>KP124321</td>
<td>KP124176</td>
<td>KP125097</td>
<td>KP124789</td>
<td>KP123871</td>
<td>KP124021</td>
<td>np</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 880.95; IMI 292915 (<italic>A. tenuissima</italic>
)</td>
<td>Belgium, <italic>Fragaria vesca</italic>
</td>
<td>KP124944</td>
<td>KP124474</td>
<td>KP124322</td>
<td>KP124177</td>
<td>KP125098</td>
<td>KP124790</td>
<td>np</td>
<td>KP124022</td>
<td>KP124628</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 965.95; IMI 289679 (<italic>A. tenuissima</italic>
)</td>
<td>India, <italic>Triticum</italic>
sp.</td>
<td>KP124945</td>
<td>KP124475</td>
<td>KP124323</td>
<td>KP124178</td>
<td>KP125099</td>
<td>KP124791</td>
<td>KP123872</td>
<td>KP124023</td>
<td>KP124629</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 966.95; IMI 79630 (<italic>A. tenuissima</italic>
)</td>
<td>India, <italic>Solanum lycopersicum</italic>
</td>
<td>KP124946</td>
<td>KP124476</td>
<td>KP124324</td>
<td>KP124179</td>
<td>KP125100</td>
<td>KP124792</td>
<td>KP123873</td>
<td>KP124024</td>
<td>KP124630</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 806.96</td>
<td>Papua New Guinea, <italic>Cyperaceae</italic>
</td>
<td>KP124947</td>
<td>KP124477</td>
<td>KP124325</td>
<td>KP124180</td>
<td>KP125101</td>
<td>KP124793</td>
<td>KP123874</td>
<td>KP124025</td>
<td>KP124631</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 916.96; E.G.S. 34.016; CBS 110977; CBS 115616; IMI 254138<sup>T</sup>
</td>
<td>India, <italic>Arachis hypogaea</italic>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584507" id="interref9080"><bold>KC584507</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:DQ678082" id="interref8010a"><bold>DQ678082</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AF347031" id="intref0085"><bold>AF347031</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY278808" id="intref0090"><bold>AY278808</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584634" id="interref9085"><bold>KC584634</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584375" id="interref9090"><bold>KC584375</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY563301" id="intref0095"><bold>AY563301</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ811978" id="interref8035"><bold>JQ811978</bold>
</ext-link>
</td>
<td>KP124632</td>
<td>KP125233</td>
<td>KP125281</td>
</tr>
<tr><td>CBS 918.96; E.G.S. 34.015; IMI 255532 (<italic>A. tenuissima</italic>
<sup>R</sup>
)</td>
<td>UK, <italic>Dianthus chinensis</italic>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584567" id="interref9095"><bold>KC584567</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584311" id="interref9100"><bold>KC584311</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AF347032" id="intref0100"><bold>AF347032</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY278809" id="intref0105"><bold>AY278809</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584693" id="interref9105"><bold>KC584693</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584435" id="interref9110"><bold>KC584435</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY563302" id="intref0110"><bold>AY563302</bold>
</ext-link>
</td>
<td>KP124026</td>
<td>KP124633</td>
<td>KP125234</td>
<td>KP125282</td>
</tr>
<tr><td>CBS 911.97; IMI 056271 (<italic>A. tenuissima</italic>
)</td>
<td>India, <italic>Artemisia brevifolia</italic>
</td>
<td>KP124948</td>
<td>KP124478</td>
<td>KP124326</td>
<td>KP124181</td>
<td>KP125102</td>
<td>KP124794</td>
<td>KP123875</td>
<td>KP124027</td>
<td>KP124634</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 639.97; IMI 366417</td>
<td>Greece, <italic>Helianthus annuus</italic>
</td>
<td>KP124949</td>
<td>KP124479</td>
<td>KP124327</td>
<td>KP124182</td>
<td>KP125103</td>
<td>KP124795</td>
<td>KP123876</td>
<td>KP124028</td>
<td>KP124635</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 102595; E.G.S. 45.100 (<italic>A. limoniasperae</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Citrus jambhiri</italic>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584540" id="interref9115"><bold>KC584540</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584284" id="interref9120"><bold>KC584284</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:FJ266476" id="intref0115"><bold>FJ266476</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY562411" id="intref0120"><bold>AY562411</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584666" id="interref9125"><bold>KC584666</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584408" id="interref9130"><bold>KC584408</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY563306" id="intref0125"><bold>AY563306</bold>
</ext-link>
</td>
<td>KP124029</td>
<td>KP124636</td>
<td>KP125235</td>
<td>KP125283</td>
</tr>
<tr><td>CBS 102596; E.G.S. 45.090 (<italic>A. citrimacularis</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Citrus jambhiri</italic>
</td>
<td>KP124950</td>
<td>KP124480</td>
<td>KP124328</td>
<td>KP124183</td>
<td>KP125104</td>
<td>KP124796</td>
<td>KP123877</td>
<td>KP124030</td>
<td>KP124637</td>
<td>KP125236</td>
<td>KP125284</td>
</tr>
<tr><td>CBS 102598; E.G.S. 46.141 (<italic>A. citriarbusti</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Minneola tangelo</italic>
</td>
<td>KP124951</td>
<td>KP124481</td>
<td>KP124329</td>
<td>KP124184</td>
<td>KP125105</td>
<td>KP124797</td>
<td>KP123878</td>
<td>KP124031</td>
<td>KP124638</td>
<td>KP125237</td>
<td>KP125285</td>
</tr>
<tr><td>CBS 102599; E.G.S. 44.166 (<italic>A. turkisafria</italic>
<sup>T</sup>
)</td>
<td>Turkey, <italic>Minneola tangelo</italic>
</td>
<td>KP124952</td>
<td>KP124482</td>
<td>KP124330</td>
<td>KP124185</td>
<td>KP125106</td>
<td>KP124798</td>
<td>KP123879</td>
<td>KP124032</td>
<td>KP124639</td>
<td>KP125238</td>
<td>KP125286</td>
</tr>
<tr><td>CBS 102600; E.G.S. 39.181; ATCC 38963 (<italic>A. toxicogenica</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Citrus reticulata</italic>
</td>
<td>KP124953</td>
<td>KP124483</td>
<td>KP124331</td>
<td>KP124186</td>
<td>KP125107</td>
<td>KP124799</td>
<td>KP123880</td>
<td>KP124033</td>
<td>KP124640</td>
<td>KP125239</td>
<td>KP125287</td>
</tr>
<tr><td>CBS 102602; E.G.S. 44.160 (<italic>A. perangusta</italic>
<sup>T</sup>
)</td>
<td>Turkey, <italic>Minneola tangelo</italic>
</td>
<td>KP124954</td>
<td>KP124484</td>
<td>KP124332</td>
<td>KP124187</td>
<td>KP125108</td>
<td>KP124800</td>
<td>KP123881</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY295023" id="intref0130"><bold>AY295023</bold>
</ext-link>
</td>
<td>KP124641</td>
<td>KP125240</td>
<td>KP125288</td>
</tr>
<tr><td>CBS 102603; E.G.S. 45.011 (<italic>A. interrupta</italic>
<sup>T</sup>
)</td>
<td>Israel, <italic>Minneola tangelo</italic>
</td>
<td>KP124955</td>
<td>KP124485</td>
<td>KP124333</td>
<td>KP124188</td>
<td>KP125109</td>
<td>KP124801</td>
<td>KP123882</td>
<td>KP124034</td>
<td>KP124642</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 102604; E.G.S. 45.007 (<italic>A. dumosa</italic>
<sup>T</sup>
)</td>
<td>Israel, <italic>Minneola tangelo</italic>
</td>
<td>KP124956</td>
<td>KP124486</td>
<td>KP124334</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY562410" id="intref0135"><bold>AY562410</bold>
</ext-link>
</td>
<td>KP125110</td>
<td>KP124802</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY563305" id="intref0140"><bold>AY563305</bold>
</ext-link>
</td>
<td>KP124035</td>
<td>KP124643</td>
<td>KP125241</td>
<td>KP125289</td>
</tr>
<tr><td>CBS 109455</td>
<td>Canada, human arm tissue</td>
<td>KP124957</td>
<td>KP124487</td>
<td>KP124335</td>
<td>KP124189</td>
<td>KP125111</td>
<td>KP124803</td>
<td>KP123883</td>
<td>KP124036</td>
<td>KP124644</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 109803</td>
<td>Germany, human skin</td>
<td>KP124958</td>
<td>KP124488</td>
<td>KP124336</td>
<td>KP124190</td>
<td>KP125112</td>
<td>KP124804</td>
<td>KP123884</td>
<td>KP124037</td>
<td>KP124645</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 110027</td>
<td>Germany, human eye</td>
<td>KP124959</td>
<td>KP124489</td>
<td>KP124337</td>
<td>KP124191</td>
<td>KP125113</td>
<td>KP124805</td>
<td>KP123885</td>
<td>KP124038</td>
<td>KP124646</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 110977; E.G.S. 34.016; CBS 916.96; CBS 115616<sup>T</sup>
</td>
<td>India, <italic>Arachis hypogaea</italic>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584507" id="interref9135"><bold>KC584507</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:DQ678082" id="interref8015a"><bold>DQ678082</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AF347031" id="intref0145"><bold>AF347031</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY278808" id="intref0150"><bold>AY278808</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584634" id="interref9140"><bold>KC584634</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584375" id="interref9145"><bold>KC584375</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY563301" id="intref0155"><bold>AY563301</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ811978" id="interref8040"><bold>JQ811978</bold>
</ext-link>
</td>
<td>KP124647</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 112249</td>
<td>Unknown, unknown</td>
<td>KP124960</td>
<td>KP124490</td>
<td>KP124338</td>
<td>KP124192</td>
<td>KP125114</td>
<td>KP124806</td>
<td>KP123886</td>
<td>KP124039</td>
<td>KP124648</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 112251 (<italic>A. arborescens</italic>
)</td>
<td>Unknown, unknown</td>
<td>KP124961</td>
<td>KP124491</td>
<td>KP124339</td>
<td>KP124193</td>
<td>KP125115</td>
<td>KP124807</td>
<td>KP123887</td>
<td>KP124040</td>
<td>KP124649</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 112252 (<italic>A. tenuissima</italic>
)</td>
<td>Unknown, unknown</td>
<td>KP124962</td>
<td>KP124492</td>
<td>KP124340</td>
<td>KP124194</td>
<td>KP125116</td>
<td>KP124808</td>
<td>KP123888</td>
<td>KP124041</td>
<td>KP124650</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 113013; CPC 4268 (<italic>A. tenuissima</italic>
)</td>
<td>South Africa, <italic>Malus domestica</italic>
</td>
<td>KP124963</td>
<td>KP124493</td>
<td>KP124341</td>
<td>KP124195</td>
<td>KP125117</td>
<td>KP124809</td>
<td>KP123889</td>
<td>KP124042</td>
<td>KP124651</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 113014; CPC 4260 (<italic>A. tenuissima</italic>
)</td>
<td>South Africa, <italic>Malus domestica</italic>
</td>
<td>KP124964</td>
<td>KP124494</td>
<td>KP124342</td>
<td>KP124196</td>
<td>KP125118</td>
<td>KP124810</td>
<td>KP123890</td>
<td>KP124043</td>
<td>KP124652</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 113015; CPC 4266 (<italic>A. tenuissima</italic>
)</td>
<td>South Africa, <italic>Malus domestica</italic>
</td>
<td>KP124965</td>
<td>KP124495</td>
<td>KP124343</td>
<td>KP124197</td>
<td>KP125119</td>
<td>KP124811</td>
<td>KP123891</td>
<td>KP124044</td>
<td>KP124653</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 113024; CPC 4334</td>
<td>South Africa, <italic>Minneola tangelo</italic>
</td>
<td>KP124966</td>
<td>KP124496</td>
<td>KP124344</td>
<td>KP124198</td>
<td>KP125120</td>
<td>KP124812</td>
<td>KP123892</td>
<td>KP124045</td>
<td>KP124654</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 113025; CPC 4342</td>
<td>South Africa, <italic>Citrus clementina</italic>
</td>
<td>KP124967</td>
<td>KP124497</td>
<td>KP124345</td>
<td>KP124199</td>
<td>KP125121</td>
<td>KP124813</td>
<td>KP123893</td>
<td>KP124046</td>
<td>KP124655</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 113054; CPC 4263 (<italic>A. tenuissima</italic>
)</td>
<td>South Africa, <italic>Malus domestica</italic>
</td>
<td>KP124968</td>
<td>KP124498</td>
<td>KP124346</td>
<td>KP124200</td>
<td>KP125122</td>
<td>KP124814</td>
<td>KP123894</td>
<td>KP124047</td>
<td>KP124656</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 115069; CPC 4254 (<italic>A. tenuissima</italic>
)</td>
<td>South Africa, <italic>Malus domestica</italic>
</td>
<td>KP124969</td>
<td>KP124499</td>
<td>KP124347</td>
<td>KP124201</td>
<td>KP125123</td>
<td>KP124815</td>
<td>KP123895</td>
<td>KP124048</td>
<td>KP124657</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 115152; HKUCC 9099</td>
<td>China, <italic>Psychotria serpens</italic>
</td>
<td>KP124970</td>
<td>KP124500</td>
<td>KP124348</td>
<td>KP124202</td>
<td>KP125124</td>
<td>KP124816</td>
<td>KP123896</td>
<td>KP124049</td>
<td>KP124658</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 115188; CPC 4348</td>
<td>South Africa, <italic>Citrus clementina</italic>
</td>
<td>KP124971</td>
<td>KP124501</td>
<td>KP124349</td>
<td>KP124203</td>
<td>KP125125</td>
<td>KP124817</td>
<td>KP123897</td>
<td>KP124050</td>
<td>KP124659</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 115190; CPC 4340</td>
<td>South Africa, <italic>Citrus sinensis</italic>
</td>
<td>KP124972</td>
<td>KP124502</td>
<td>KP124350</td>
<td>KP124204</td>
<td>KP125126</td>
<td>KP124818</td>
<td>KP123898</td>
<td>KP124051</td>
<td>KP124660</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 115199; CPC 4327</td>
<td>South Africa, <italic>Minneola tangelo</italic>
</td>
<td>KP124973</td>
<td>KP124503</td>
<td>KP124351</td>
<td>KP124205</td>
<td>KP125127</td>
<td>KP124819</td>
<td>KP123899</td>
<td>KP124052</td>
<td>KP124661</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 115200; CPC 4325</td>
<td>South Africa, <italic>Minneola tangelo</italic>
</td>
<td>KP124974</td>
<td>KP124504</td>
<td>KP124352</td>
<td>KP124206</td>
<td>KP125128</td>
<td>KP124820</td>
<td>KP123900</td>
<td>KP124053</td>
<td>KP124662</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 115616; EGS 34.016; CBS 916.96; CBS 110977<sup>T</sup>
</td>
<td>India, <italic>Arachis hypogaea</italic>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584507" id="interref9150"><bold>KC584507</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:DQ678082" id="interref8020a"><bold>DQ678082</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AF347031" id="intref0160"><bold>AF347031</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY278808" id="intref0165"><bold>AY278808</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584634" id="interref9155"><bold>KC584634</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584375" id="interref9160"><bold>KC584375</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY563301" id="intref0170"><bold>AY563301</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ811978" id="interref8045"><bold>JQ811978</bold>
</ext-link>
</td>
<td>KP124663</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 116749</td>
<td>Netherlands, unknown</td>
<td>KP124975</td>
<td>KP124505</td>
<td>KP124353</td>
<td>KP124207</td>
<td>KP125129</td>
<td>KP124821</td>
<td>KP123901</td>
<td>KP124054</td>
<td>KP124664</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 117130</td>
<td>Italy, <italic>Arbutus unedo</italic>
</td>
<td>KP124976</td>
<td>KP124506</td>
<td>KP124354</td>
<td>KP124208</td>
<td>KP125130</td>
<td>KP124822</td>
<td>KP123902</td>
<td>KP124055</td>
<td>KP124665</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 117143</td>
<td>Italy, <italic>Capsicum annuum</italic>
</td>
<td>KP124977</td>
<td>KP124507</td>
<td>KP124355</td>
<td>KP124209</td>
<td>KP125131</td>
<td>KP124823</td>
<td>KP123903</td>
<td>KP124056</td>
<td>KP124666</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 118811; E.G.S. 35.158 (<italic>A. brassicinae</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Brassica oleracea</italic>
</td>
<td>KP124978</td>
<td>KP124508</td>
<td>KP124356</td>
<td>KP124210</td>
<td>KP125132</td>
<td>KP124824</td>
<td>KP123904</td>
<td>KP124057</td>
<td>KP124667</td>
<td>KP125242</td>
<td>KP125290</td>
</tr>
<tr><td>CBS 118812; E.G.S. 37.050 (<italic>A. daucifolii</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Daucus carota</italic>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584525" id="interref9165"><bold>KC584525</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584269" id="interref9170"><bold>KC584269</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584193" id="interref9175"><bold>KC584193</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584112" id="interref9180"><bold>KC584112</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584652" id="interref9185"><bold>KC584652</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584393" id="interref9190"><bold>KC584393</bold>
</ext-link>
</td>
<td>KP123905</td>
<td>KP124058</td>
<td>KP124668</td>
<td>KP125243</td>
<td>KP125291</td>
</tr>
<tr><td>CBS 118814; E.G.S. 44.048 (<italic>A. tomaticola</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Solanum lycopersicum</italic>
</td>
<td>KP124979</td>
<td>KP124509</td>
<td>KP124357</td>
<td>KP124211</td>
<td>KP125133</td>
<td>KP124825</td>
<td>KP123906</td>
<td>KP124059</td>
<td>KP124669</td>
<td>KP125244</td>
<td>KP125292</td>
</tr>
<tr><td>CBS 118815; E.G.S. 51.132 (<italic>A. tomaticola</italic>
<sup>R</sup>
)</td>
<td>USA, <italic>Solanum lycopersicum</italic>
</td>
<td>KP124980</td>
<td>KP124510</td>
<td>KP124358</td>
<td>KP124212</td>
<td>KP125134</td>
<td>KP124826</td>
<td>KP123907</td>
<td>KP124060</td>
<td>KP124670</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 118818; E.G.S. 31.032 (<italic>A. vaccinii</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Vaccinium</italic>
sp.</td>
<td>KP124981</td>
<td>KP124511</td>
<td>KP124359</td>
<td>KP124213</td>
<td>KP125135</td>
<td>KP124827</td>
<td>KP123908</td>
<td>KP124061</td>
<td>KP124671</td>
<td>KP125245</td>
<td>KP125293</td>
</tr>
<tr><td>CBS 119115</td>
<td>Greece, <italic>Prunus</italic>
sp.</td>
<td>KP124982</td>
<td>KP124512</td>
<td>KP124360</td>
<td>KP124214</td>
<td>KP125136</td>
<td>KP124828</td>
<td>KP123909</td>
<td>KP124062</td>
<td>np</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 119399; E.G.S. 39.189 (<italic>A. postmessia</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Minneola tangelo</italic>
</td>
<td>KP124983</td>
<td>KP124513</td>
<td>KP124361</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ646328" id="interref8050"><bold>JQ646328</bold>
</ext-link>
</td>
<td>KP125137</td>
<td>KP124829</td>
<td>KP123910</td>
<td>KP124063</td>
<td>KP124672</td>
<td>KP125246</td>
<td>KP125294</td>
</tr>
<tr><td>CBS 119408; E.G.S. 40.140 (<italic>A. herbiphorbicola</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Euphorbia esula</italic>
</td>
<td>KP124984</td>
<td>KP124514</td>
<td>KP124362</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ646326" id="interref8055"><bold>JQ646326</bold>
</ext-link>
</td>
<td>KP125138</td>
<td>KP124830</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ646410" id="interref8060"><bold>JQ646410</bold>
</ext-link>
</td>
<td>KP124064</td>
<td>KP124673</td>
<td>KP125247</td>
<td>KP125295</td>
</tr>
<tr><td>CBS 119543; E.G.S. 12.160 (<italic>A. citricancri</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Citrus paradisi</italic>
</td>
<td>KP124985</td>
<td>KP124515</td>
<td>KP124363</td>
<td>KP124215</td>
<td>KP125139</td>
<td>KP124831</td>
<td>KP123911</td>
<td>KP124065</td>
<td>KP124674</td>
<td>KP125248</td>
<td>KP125296</td>
</tr>
<tr><td>CBS 120829</td>
<td>Greece, <italic>Punica granatum</italic>
</td>
<td>KP124986</td>
<td>KP124516</td>
<td>KP124364</td>
<td>KP124216</td>
<td>KP125140</td>
<td>KP124832</td>
<td>KP123912</td>
<td>KP124066</td>
<td>KP124675</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 121336; E.G.S. 37.005; ATCC 11680 (<italic>A. palandui</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Allium</italic>
sp.</td>
<td>KP124987</td>
<td>KP124517</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KJ862254" id="interref7000"><bold>KJ862254</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KJ862255" id="interref7005"><bold>KJ862255</bold>
</ext-link>
</td>
<td>KP125141</td>
<td>KP124833</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KJ862259" id="interref7010"><bold>KJ862259</bold>
</ext-link>
</td>
<td>KP124067</td>
<td>KP124676</td>
<td>KP125249</td>
<td>KP125297</td>
</tr>
<tr><td>CBS 121344; E.G.S. 45.003 (<italic>A. turkisafria</italic>
<sup>R</sup>
)</td>
<td>Israel, <italic>Minneola tangelo</italic>
</td>
<td>KP124988</td>
<td>KP124518</td>
<td>KP124365</td>
<td>KP124217</td>
<td>KP125142</td>
<td>KP124834</td>
<td>KP123913</td>
<td>KP124068</td>
<td>KP124677</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 121346; E.G.S. 45.056 (<italic>A. turkisafria</italic>
<sup>R</sup>
)</td>
<td>South Africa, <italic>Minneola tangelo</italic>
</td>
<td>KP124989</td>
<td>KP124519</td>
<td>KP124366</td>
<td>KP124218</td>
<td>KP125143</td>
<td>KP124835</td>
<td>KP123914</td>
<td>KP124069</td>
<td>KP124678</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 121348; E.G.S. 50.070 (<italic>A. platycodonis</italic>
<sup>T</sup>
)</td>
<td>China, <italic>Platycodon grandiflorus</italic>
</td>
<td>KP124990</td>
<td>KP124520</td>
<td>KP124367</td>
<td>KP124219</td>
<td>KP125144</td>
<td>KP124836</td>
<td>KP123915</td>
<td>KP124070</td>
<td>KP124679</td>
<td>KP125250</td>
<td>KP125298</td>
</tr>
<tr><td>CBS 121454; E.G.S. 46.069 (<italic>A. destruens</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Cuscuta gronovii</italic>
</td>
<td>KP124991</td>
<td>KP124521</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AF278836" id="intref0175"><bold>AF278836</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY278812" id="intref0180"><bold>AY278812</bold>
</ext-link>
</td>
<td>KP125145</td>
<td>KP124837</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ646402" id="interref8065"><bold>JQ646402</bold>
</ext-link>
</td>
<td>KP124071</td>
<td>KP124680</td>
<td>KP125251</td>
<td>KP125299</td>
</tr>
<tr><td>CBS 121455; E.G.S. 50.078 (<italic>A. broussonetiae</italic>
<sup>T</sup>
)</td>
<td>China, <italic>Broussonetia papyrifera</italic>
</td>
<td>KP124992</td>
<td>KP124522</td>
<td>KP124368</td>
<td>KP124220</td>
<td>KP125146</td>
<td>KP124838</td>
<td>KP123916</td>
<td>KP124072</td>
<td>KP124681</td>
<td>KP125252</td>
<td>KP125300</td>
</tr>
<tr><td>CBS 121456; E.G.S. 50.080; HSAUP 9600197 (<italic>A. sanguisorbae</italic>
<sup>T</sup>
)</td>
<td>China, <italic>Sanguisorba officinalis</italic>
</td>
<td>KP124993</td>
<td>KP124523</td>
<td>KP124369</td>
<td>KP124221</td>
<td>KP125147</td>
<td>KP124839</td>
<td>KP123917</td>
<td>KP124073</td>
<td>KP124682</td>
<td>KP125253</td>
<td>KP125301</td>
</tr>
<tr><td>CBS 121492; HSAUP0207 (<italic>Ulocladium cucumisis</italic>
)</td>
<td>China, <italic>Cucumis melo</italic>
</td>
<td>KP124994</td>
<td>KP124524</td>
<td>KP124370</td>
<td>KP124222</td>
<td>KP125148</td>
<td>KP124840</td>
<td>KP123918</td>
<td>KP124074</td>
<td>KP124683</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 121544; E.G.S. 38.022 (<italic>A. caudata</italic>
<sup>R</sup>
)</td>
<td>USA, <italic>Cucumis sativus</italic>
</td>
<td>KP124995</td>
<td>KP124525</td>
<td>KP124371</td>
<td>KP124223</td>
<td>KP125149</td>
<td>KP124841</td>
<td>KP123919</td>
<td>KP124075</td>
<td>KP124684</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 121547; E.G.S. 50.048 (<italic>A. yali-inficiens</italic>
<sup>T</sup>
)</td>
<td>China, <italic>Pyrus bretschneideri</italic>
</td>
<td>KP124996</td>
<td>KP124526</td>
<td>KP124372</td>
<td>KP124224</td>
<td>KP125150</td>
<td>KP124842</td>
<td>KP123920</td>
<td>KP124076</td>
<td>KP124685</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 124277 (<italic>A. tenuissima</italic>
)</td>
<td>Denmark, <italic>Prunus</italic>
sp.</td>
<td>KP124997</td>
<td>KP124527</td>
<td>KP124373</td>
<td>KP124225</td>
<td>KP125151</td>
<td>KP124843</td>
<td>KP123921</td>
<td>KP124077</td>
<td>KP124686</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 124278 (<italic>A. tenuissima</italic>
)</td>
<td>Denmark, <italic>Prunus</italic>
sp.</td>
<td>KP124998</td>
<td>KP124528</td>
<td>KP124374</td>
<td>KP124226</td>
<td>KP125152</td>
<td>KP124844</td>
<td>KP123922</td>
<td>KP124078</td>
<td>KP124687</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 125606</td>
<td>India, human</td>
<td>KP124999</td>
<td>KP124529</td>
<td>KP124375</td>
<td>KP124227</td>
<td>KP125153</td>
<td>KP124845</td>
<td>KP123923</td>
<td>KP124079</td>
<td>KP124688</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 126071 (<italic>A. tenuissima</italic>
)</td>
<td>Namibia, soil</td>
<td>KP125000</td>
<td>KP124530</td>
<td>KP124376</td>
<td>KP124228</td>
<td>KP125154</td>
<td>KP124846</td>
<td>KP123924</td>
<td>KP124080</td>
<td>KP124689</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 126072 (<italic>A. tenuissima</italic>
)</td>
<td>Namibia, soil</td>
<td>KP125001</td>
<td>KP124531</td>
<td>KP124377</td>
<td>KP124229</td>
<td>KP125155</td>
<td>KP124847</td>
<td>KP123925</td>
<td>KP124081</td>
<td>KP124690</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 126908</td>
<td>USA, soil</td>
<td>KP125002</td>
<td>KP124532</td>
<td>KP124378</td>
<td>KP124230</td>
<td>KP125156</td>
<td>KP124848</td>
<td>KP123926</td>
<td>KP124082</td>
<td>KP124691</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 126910 (<italic>A. tenuis</italic>
)</td>
<td>USA, soil</td>
<td>KP125003</td>
<td>KP124533</td>
<td>KP124379</td>
<td>KP124231</td>
<td>KP125157</td>
<td>KP124849</td>
<td>KP123927</td>
<td>KP124083</td>
<td>KP124692</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 127334</td>
<td>USA, soil</td>
<td>KP125004</td>
<td>KP124534</td>
<td>KP124380</td>
<td>KP124232</td>
<td>KP125158</td>
<td>KP124850</td>
<td>KP123928</td>
<td>KP124084</td>
<td>KP124693</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 127671; E.G.S. 52.121 (<italic>A. seleniiphila</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Stanleya pinnata</italic>
</td>
<td>KP125005</td>
<td>KP124535</td>
<td>KP124381</td>
<td>KP124233</td>
<td>KP125159</td>
<td>KP124851</td>
<td>KP123929</td>
<td>KP124085</td>
<td>KP124694</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 127672; E.G.S. 52.122 (<italic>A. astragali</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Astragalus bisulcatus</italic>
</td>
<td>KP125006</td>
<td>KP124536</td>
<td>KP124382</td>
<td>KP124234</td>
<td>KP125160</td>
<td>KP124852</td>
<td>KP123930</td>
<td>KP124086</td>
<td>KP124695</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 130254</td>
<td>India, human sputum</td>
<td>KP125007</td>
<td>KP124537</td>
<td>KP124383</td>
<td>KP124235</td>
<td>KP125161</td>
<td>KP124853</td>
<td>KP123931</td>
<td>KP124087</td>
<td>KP124696</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 130255</td>
<td>India, human sputum</td>
<td>KP125008</td>
<td>KP124538</td>
<td>KP124384</td>
<td>KP124236</td>
<td>KP125162</td>
<td>KP124854</td>
<td>KP123932</td>
<td>KP124088</td>
<td>KP124697</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 130258</td>
<td>India, human sputum</td>
<td>KP125009</td>
<td>KP124539</td>
<td>KP124385</td>
<td>KP124237</td>
<td>KP125163</td>
<td>KP124855</td>
<td>KP123933</td>
<td>KP124089</td>
<td>KP124698</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 130259</td>
<td>India, human sputum</td>
<td>KP125010</td>
<td>KP124540</td>
<td>KP124386</td>
<td>KP124238</td>
<td>KP125164</td>
<td>KP124856</td>
<td>KP123934</td>
<td>KP124090</td>
<td>KP124699</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 130260</td>
<td>India, human sputum</td>
<td>KP125011</td>
<td>KP124541</td>
<td>KP124387</td>
<td>KP124239</td>
<td>KP125165</td>
<td>KP124857</td>
<td>KP123935</td>
<td>KP124091</td>
<td>KP124700</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 130261</td>
<td>India, human sputum</td>
<td>KP125012</td>
<td>KP124542</td>
<td>KP124388</td>
<td>KP124240</td>
<td>KP125166</td>
<td>KP124858</td>
<td>KP123936</td>
<td>KP124092</td>
<td>KP124701</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 130262</td>
<td>India, human sputum</td>
<td>KP125013</td>
<td>KP124543</td>
<td>KP124389</td>
<td>KP124241</td>
<td>KP125167</td>
<td>KP124859</td>
<td>KP123937</td>
<td>KP124093</td>
<td>KP124702</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 130263</td>
<td>India, human sputum</td>
<td>KP125014</td>
<td>KP124544</td>
<td>KP124390</td>
<td>KP124242</td>
<td>KP125168</td>
<td>KP124860</td>
<td>KP123938</td>
<td>KP124094</td>
<td>KP124703</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 130265</td>
<td>India, human sputum</td>
<td>KP125015</td>
<td>KP124545</td>
<td>KP124391</td>
<td>KP124243</td>
<td>KP125169</td>
<td>KP124861</td>
<td>KP123939</td>
<td>KP124095</td>
<td>KP124704</td>
<td></td>
<td></td>
</tr>
<tr><td colspan="13"><bold><italic>Alternaria arborescens</italic>
SC</bold>
</td>
</tr>
<tr><td>CBS 101.13; E.G.S. 07.022; QM1765 (<italic>A. geophila</italic>
<sup>T</sup>
)</td>
<td>Switzerland, peat soil</td>
<td>KP125016</td>
<td>KP124546</td>
<td>KP124392</td>
<td>KP124244</td>
<td>KP125170</td>
<td>KP124862</td>
<td>KP123940</td>
<td>KP124096</td>
<td>KP124705</td>
<td>KP125254</td>
<td>KP125302</td>
</tr>
<tr><td>CBS 105.24; IHEM 3123 (<italic>A. alternata</italic>
)</td>
<td>Unknown, <italic>Solanum tuberosum</italic>
</td>
<td>KP125017</td>
<td>KP124547</td>
<td>KP124393</td>
<td>KP124245</td>
<td>KP125171</td>
<td>KP124863</td>
<td>KP123941</td>
<td>KP124097</td>
<td>KP124706</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 108.41; E.G.S. 44.087; ATCC 11892 (<italic>A. alternata</italic>
)</td>
<td>Unknown, wood</td>
<td>KP125018</td>
<td>KP124548</td>
<td>KP124394</td>
<td>KP124246</td>
<td>KP125172</td>
<td>KP124864</td>
<td>KP123942</td>
<td>KP124098</td>
<td>KP124707</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 113.41; IHEM 3318 (<italic>A. alternata</italic>
)</td>
<td>Unknown, <italic>Schizanthus</italic>
sp.</td>
<td>KP125019</td>
<td>KP124549</td>
<td>KP124395</td>
<td>KP124247</td>
<td>KP125173</td>
<td>KP124865</td>
<td>KP123943</td>
<td>KP124099</td>
<td>KP124708</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 105.49 (<italic>A. alternata</italic>
)</td>
<td>Italy, contaminant blood culture</td>
<td>KP125020</td>
<td>KP124550</td>
<td>KP124396</td>
<td>KP124248</td>
<td>KP125174</td>
<td>KP124866</td>
<td>KP123944</td>
<td>KP124100</td>
<td>KP124709</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 126.60; IMI 081622 (<italic>A. maritima</italic>
)</td>
<td>UK, wood</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:GU456294" id="intref0185"><bold>GU456294</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:GU456317" id="intref0190"><bold>GU456317</bold>
</ext-link>
</td>
<td>KP124397</td>
<td>KP124249</td>
<td>KP125175</td>
<td>KP124867</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ646390" id="interref8070"><bold>JQ646390</bold>
</ext-link>
</td>
<td>KP124101</td>
<td>KP124710</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 750.68; LCP 68.1989 (<italic>A. tenuissima</italic>
)</td>
<td>France, <italic>Phaseolus vulgaris</italic>
</td>
<td>KP125021</td>
<td>KP124551</td>
<td>KP124398</td>
<td>KP124250</td>
<td>KP125176</td>
<td>KP124868</td>
<td>KP123945</td>
<td>KP124102</td>
<td>KP124711</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 102605; E.G.S. 39.128 (<italic>A. arborescens</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Solanum lycopersicum</italic>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584509" id="interref9195"><bold>KC584509</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584253" id="interref9200"><bold>KC584253</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AF347033" id="intref0195"><bold>AF347033</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY278810" id="intref0200"><bold>AY278810</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584636" id="interref9205"><bold>KC584636</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584377" id="interref9210"><bold>KC584377</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY563303" id="intref0205"><bold>AY563303</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY295028" id="intref0210"><bold>AY295028</bold>
</ext-link>
</td>
<td>KP124712</td>
<td>KP125255</td>
<td>KP125303</td>
</tr>
<tr><td>CBS 109730 (<italic>A. arborescens</italic>
)</td>
<td>USA, <italic>Solanum lycopersicum</italic>
</td>
<td>KP125022</td>
<td>KP124552</td>
<td>KP124399</td>
<td>KP124251</td>
<td>KP125177</td>
<td>KP124869</td>
<td>KP123946</td>
<td>KP124103</td>
<td>KP124713</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 112633; CPC 4244 (<italic>A. arborescens</italic>
)</td>
<td>South Africa, <italic>Malus domestica</italic>
</td>
<td>KP125023</td>
<td>KP124553</td>
<td>KP124400</td>
<td>KP124252</td>
<td>KP125178</td>
<td>KP124870</td>
<td>KP123947</td>
<td>KP124104</td>
<td>KP124714</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 112749; CPC 4245 (<italic>A. arborescens</italic>
)</td>
<td>South Africa, <italic>Malus domestica</italic>
</td>
<td>KP125024</td>
<td>KP124554</td>
<td>KP124401</td>
<td>KP124253</td>
<td>KP125179</td>
<td>KP124871</td>
<td>KP123948</td>
<td>KP124105</td>
<td>KP124715</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 115189; CPC 4345 (<italic>A. arborescens</italic>
)</td>
<td>South Africa, <italic>Citrus clementina</italic>
</td>
<td>KP125025</td>
<td>KP124555</td>
<td>KP124402</td>
<td>KP124254</td>
<td>KP125180</td>
<td>KP124872</td>
<td>KP123949</td>
<td>KP124106</td>
<td>KP124716</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 115516; CPC 4247 (<italic>A. arborescens</italic>
)</td>
<td>South Africa, <italic>Malus domestica</italic>
</td>
<td>KP125026</td>
<td>KP124556</td>
<td>KP124403</td>
<td>KP124255</td>
<td>KP125181</td>
<td>KP124873</td>
<td>KP123950</td>
<td>KP124107</td>
<td>KP124717</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 115517; CPC 4246 (<italic>A. arborescens</italic>
)</td>
<td>South Africa, <italic>Malus domestica</italic>
</td>
<td>KP125027</td>
<td>KP124557</td>
<td>KP124404</td>
<td>KP124256</td>
<td>KP125182</td>
<td>KP124874</td>
<td>KP123951</td>
<td>KP124108</td>
<td>KP124718</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 116329 (<italic>A. alternata</italic>
)</td>
<td>Germany, <italic>Malus domestica</italic>
</td>
<td>KP125028</td>
<td>KP124558</td>
<td>KP124405</td>
<td>KP124257</td>
<td>KP125183</td>
<td>KP124875</td>
<td>KP123952</td>
<td>KP124109</td>
<td>KP124719</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 117587 (<italic>A. alternata</italic>
)</td>
<td>Netherlands, <italic>Brassica</italic>
sp.</td>
<td>KP125029</td>
<td>KP124559</td>
<td>KP124406</td>
<td>KP124258</td>
<td>KP125184</td>
<td>KP124876</td>
<td>KP123953</td>
<td>KP124110</td>
<td>KP124720</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 118389; E.G.S. 90.131 (<italic>A. gaisen</italic>
<sup>R</sup>
)</td>
<td>Japan, <italic>Pyrus pyrifolia</italic>
</td>
<td>KP125030</td>
<td>KP124560</td>
<td>KP124407</td>
<td>KP124259</td>
<td>KP125185</td>
<td>KP124877</td>
<td>KP123954</td>
<td>KP124111</td>
<td>KP124721</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 119544; E.G.S. 43.072 (<italic>A. cerealis</italic>
<sup>T</sup>
)</td>
<td>New Zealand, <italic>Avena sativa</italic>
</td>
<td>KP125031</td>
<td>KP124561</td>
<td>KP124408</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ646321" id="interref8075"><bold>JQ646321</bold>
</ext-link>
</td>
<td>KP125186</td>
<td>KP124878</td>
<td>KP123955</td>
<td>KP124112</td>
<td>KP124722</td>
<td>KP125256</td>
<td>KP125304</td>
</tr>
<tr><td>CBS 119545; E.G.S. 48.130 (<italic>A. senecionicola</italic>
<sup>T</sup>
)</td>
<td>New Zealand, <italic>Senecio skirrhodon</italic>
</td>
<td>KP125032</td>
<td>KP124562</td>
<td>KP124409</td>
<td>KP124260</td>
<td>KP125187</td>
<td>KP124879</td>
<td>KP123956</td>
<td>KP124113</td>
<td>KP124723</td>
<td>KP125257</td>
<td>KP125305</td>
</tr>
<tr><td>CBS 123235 (<italic>A. alternata</italic>
)</td>
<td>Denmark, human toenail</td>
<td>KP125033</td>
<td>KP124563</td>
<td>KP124410</td>
<td>KP124261</td>
<td>KP125188</td>
<td>KP124880</td>
<td>KP123957</td>
<td>KP124114</td>
<td>KP124724</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 123266 (<italic>A. alternata</italic>
)</td>
<td>Denmark, human toenail</td>
<td>KP125034</td>
<td>KP124564</td>
<td>KP124411</td>
<td>KP124262</td>
<td>KP125189</td>
<td>KP124881</td>
<td>KP123958</td>
<td>KP124115</td>
<td>KP124725</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 123267 (<italic>A. alternata</italic>
)</td>
<td>Denmark, human nail</td>
<td>KP125035</td>
<td>KP124565</td>
<td>KP124412</td>
<td>KP124263</td>
<td>KP125190</td>
<td>KP124882</td>
<td>KP123959</td>
<td>KP124116</td>
<td>KP124726</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 124274 (<italic>A. arborescens</italic>
)</td>
<td>Denmark, <italic>Prunus</italic>
sp.</td>
<td>KP125036</td>
<td>KP124566</td>
<td>KP124413</td>
<td>KP124264</td>
<td>KP125191</td>
<td>np</td>
<td>KP123960</td>
<td>KP124117</td>
<td>KP124727</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 124281 (<italic>A. arborescens</italic>
)</td>
<td>Denmark, <italic>Triticum</italic>
sp.</td>
<td>KP125037</td>
<td>KP124567</td>
<td>KP124414</td>
<td>KP124265</td>
<td>KP125192</td>
<td>KP124883</td>
<td>KP123961</td>
<td>KP124118</td>
<td>KP124728</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 124282 (<italic>A. arborescens</italic>
)</td>
<td>Denmark, <italic>Hordeum vulgare</italic>
</td>
<td>KP125038</td>
<td>KP124568</td>
<td>KP124415</td>
<td>KP124266</td>
<td>KP125193</td>
<td>KP124884</td>
<td>KP123962</td>
<td>KP124119</td>
<td>KP124729</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 124283 (<italic>A. tenuissima</italic>
)</td>
<td>Russia, <italic>Oryza</italic>
sp.</td>
<td>KP125039</td>
<td>KP124569</td>
<td>KP124416</td>
<td>KP124267</td>
<td>KP125194</td>
<td>KP124885</td>
<td>KP123963</td>
<td>KP124120</td>
<td>KP124730</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 127263 (<italic>A. alternata</italic>
)</td>
<td>Mexico, human nasal infection</td>
<td>KP125040</td>
<td>KP124570</td>
<td>KP124417</td>
<td>KP124268</td>
<td>KP125195</td>
<td>KP124886</td>
<td>KP123964</td>
<td>KP124121</td>
<td>KP124731</td>
<td></td>
<td></td>
</tr>
<tr><td>CPC 25266</td>
<td>Austria, <italic>Pyrus</italic>
sp.</td>
<td>KP125041</td>
<td>KP124571</td>
<td>KP124418</td>
<td>KP124269</td>
<td>KP125196</td>
<td>KP124887</td>
<td>KP123965</td>
<td>KP124122</td>
<td>KP124732</td>
<td></td>
<td></td>
</tr>
<tr><td colspan="13"><bold><italic>Alternaria betae-kenyensis</italic>
</bold>
</td>
</tr>
<tr><td>CBS 118810; E.G.S. 49.159; IMI 385709<sup>T</sup>
</td>
<td>Kenya, <italic>Beta vulgaris</italic>
var. <italic>cicla</italic>
</td>
<td>KP125042</td>
<td>KP124572</td>
<td>KP124419</td>
<td>KP124270</td>
<td>KP125197</td>
<td>KP124888</td>
<td>KP123966</td>
<td>KP124123</td>
<td>KP124733</td>
<td>KP125258</td>
<td>KP125306</td>
</tr>
<tr><td colspan="13"><bold><italic>Alternaria burnsii</italic>
</bold>
</td>
</tr>
<tr><td>CBS 108.27</td>
<td>Unknown, <italic>Gomphrena globosa</italic>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584601" id="interref9215"><bold>KC584601</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584343" id="interref9220"><bold>KC584343</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584236" id="interref9225"><bold>KC584236</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584162" id="interref9230"><bold>KC584162</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584727" id="interref9235"><bold>KC584727</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584468" id="interref9240"><bold>KC584468</bold>
</ext-link>
</td>
<td>KP123850</td>
<td>KP123997</td>
<td>KP124605</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 107.38; E.G.S. 06.185<sup>T</sup>
</td>
<td>India, <italic>Cuminum cyminum</italic>
</td>
<td>KP125043</td>
<td>KP124573</td>
<td>KP124420</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ646305" id="interref8080"><bold>JQ646305</bold>
</ext-link>
</td>
<td>KP125198</td>
<td>KP124889</td>
<td>KP123967</td>
<td>KP124124</td>
<td>KP124734</td>
<td>KP125259</td>
<td>np</td>
</tr>
<tr><td>CBS 110.50; MUCL 10012 (<italic>A. gossypina</italic>
)</td>
<td>Mozambique, <italic>Gossypium</italic>
sp.</td>
<td>KP125044</td>
<td>KP124574</td>
<td>KP124421</td>
<td>KP124271</td>
<td>KP125199</td>
<td>KP124890</td>
<td>KP123968</td>
<td>KP124125</td>
<td>KP124735</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 879.95; IMI 300779 (<italic>A. tenuissima</italic>
)</td>
<td>UK, <italic>Sorghum</italic>
sp.</td>
<td>KP125045</td>
<td>KP124575</td>
<td>KP124422</td>
<td>KP124272</td>
<td>KP125200</td>
<td>KP124891</td>
<td>KP123969</td>
<td>KP124126</td>
<td>KP124736</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 118816; E.G.S. 43.145; IMI 368045 (<italic>A. rhizophorae</italic>
<sup>T</sup>
)</td>
<td>India, <italic>Rhizophora mucronata</italic>
</td>
<td>KP125046</td>
<td>KP124576</td>
<td>KP124423</td>
<td>KP124273</td>
<td>KP125201</td>
<td>KP124892</td>
<td>KP123970</td>
<td>KP124127</td>
<td>KP124737</td>
<td>KP125260</td>
<td>KP125307</td>
</tr>
<tr><td>CBS 118817; E.G.S. 39.014; IMI 318433 (<italic>A. tinosporae</italic>
<sup>T</sup>
)</td>
<td>India, <italic>Tinospora cordifolia</italic>
</td>
<td>KP125047</td>
<td>KP124577</td>
<td>KP124424</td>
<td>KP124274</td>
<td>KP125202</td>
<td>KP124893</td>
<td>KP123971</td>
<td>KP124128</td>
<td>KP124738</td>
<td>KP125261</td>
<td>KP125308</td>
</tr>
<tr><td>CBS 130264</td>
<td>India, human sputum</td>
<td>KP125048</td>
<td>KP124578</td>
<td>KP124425</td>
<td>KP124275</td>
<td>KP125203</td>
<td>KP124894</td>
<td>KP123972</td>
<td>KP124129</td>
<td>KP124739</td>
<td></td>
<td></td>
</tr>
<tr><td colspan="13"><bold><italic>Alternaria eichhorniae</italic>
</bold>
</td>
</tr>
<tr><td>CBS 489.92; ATCC 22255; ATCC 46777; IMI 121518<sup>T</sup>
</td>
<td>India, <italic>Eichhornia crassipes</italic>
</td>
<td>KP125049</td>
<td>KP124579</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC146356" id="interref9245"><bold>KC146356</bold>
</ext-link>
</td>
<td>KP124276</td>
<td>KP125204</td>
<td>KP124895</td>
<td>KP123973</td>
<td>KP124130</td>
<td>KP124740</td>
<td>KP125262</td>
<td>KP125309</td>
</tr>
<tr><td>CBS 119778; E.G.S. 45.026; IMI 37968<sup>R</sup>
</td>
<td>Indonesia, <italic>Eichhornia crassipes</italic>
</td>
<td>KP125050</td>
<td>KP124580</td>
<td>KP124426</td>
<td>KP124277</td>
<td>KP125205</td>
<td>KP124896</td>
<td>np</td>
<td>KP124131</td>
<td>KP124741</td>
<td>KP125263</td>
<td>KP125310</td>
</tr>
<tr><td colspan="13"><bold><italic>Alternaria gaisen</italic>
</bold>
</td>
</tr>
<tr><td>CBS 632.93; E.G.S. 90.512<sup>R</sup>
</td>
<td>Japan, <italic>Pyrus pyrifolia</italic>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584531" id="interref9250"><bold>KC584531</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584275" id="interref9255"><bold>KC584275</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584197" id="interref9260"><bold>KC584197</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584116" id="interref9265"><bold>KC584116</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584658" id="interref9270"><bold>KC584658</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584399" id="interref9275"><bold>KC584399</bold>
</ext-link>
</td>
<td>KP123974</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY295033" id="intref0215"><bold>AY295033</bold>
</ext-link>
</td>
<td>KP124742</td>
<td>KP125264</td>
<td>KP125311</td>
</tr>
<tr><td>CBS 118488; E.G.S. 90.391<sup>R</sup>
</td>
<td>Japan, <italic>Pyrus pyrifolia</italic>
</td>
<td>KP125051</td>
<td>KP124581</td>
<td>KP124427</td>
<td>KP124278</td>
<td>KP125206</td>
<td>KP124897</td>
<td>KP123975</td>
<td>KP124132</td>
<td>KP124743</td>
<td>KP125265</td>
<td>KP125312</td>
</tr>
<tr><td>CPC 25268</td>
<td>Portugal, unknown</td>
<td>KP125052</td>
<td>KP124582</td>
<td>KP124428</td>
<td>KP124279</td>
<td>KP125207</td>
<td>KP124898</td>
<td>KP123976</td>
<td>KP124133</td>
<td>KP124744</td>
<td></td>
<td></td>
</tr>
<tr><td colspan="13"><bold><italic>Alternaria gossypina</italic>
</bold>
</td>
</tr>
<tr><td>CBS 100.23 (<italic>A. grossulariae</italic>
)</td>
<td>Unknown, <italic>Malus domestica</italic>
</td>
<td>KP125053</td>
<td>KP124583</td>
<td>KP124429</td>
<td>KP124280</td>
<td>KP125208</td>
<td>KP124899</td>
<td>KP123977</td>
<td>KP124134</td>
<td>KP124745</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 104.32<sup>T</sup>
</td>
<td>Zimbabwe, <italic>Gossypium</italic>
sp.</td>
<td>KP125054</td>
<td>KP124584</td>
<td>KP124430</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ646312" id="interref8085"><bold>JQ646312</bold>
</ext-link>
</td>
<td>KP125209</td>
<td>KP124900</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ646395" id="interref8090"><bold>JQ646395</bold>
</ext-link>
</td>
<td>KP124135</td>
<td>KP124746</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 107.36 (<italic>A. grisea</italic>
<sup>T</sup>
)</td>
<td>Indonesia, soil</td>
<td>KP125055</td>
<td>KP124585</td>
<td>KP124431</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ646310" id="interref8095"><bold>JQ646310</bold>
</ext-link>
</td>
<td>KP125210</td>
<td>KP124901</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:JQ646393" id="interref8100"><bold>JQ646393</bold>
</ext-link>
</td>
<td>KP124136</td>
<td>KP124747</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 102597; E.G.S. 45.114 (<italic>A. tangelonis</italic>
<sup>T</sup>
)</td>
<td>USA, <italic>Minneola tangelo</italic>
</td>
<td>KP125056</td>
<td>KP124586</td>
<td>KP124432</td>
<td>KP124281</td>
<td>KP125211</td>
<td>KP124902</td>
<td>KP123978</td>
<td>KP124137</td>
<td>KP124748</td>
<td>KP125266</td>
<td>KP125313</td>
</tr>
<tr><td>CBS 102601; E.G.S. 45.017 (<italic>A. colombiana</italic>
<sup>T</sup>
)</td>
<td>Colombia, <italic>Minneola tangelo</italic>
</td>
<td>KP125057</td>
<td>KP124587</td>
<td>KP124433</td>
<td>KP124282</td>
<td>KP125212</td>
<td>KP124903</td>
<td>KP123979</td>
<td>KP124138</td>
<td>KP124749</td>
<td>KP125267</td>
<td>KP125314</td>
</tr>
<tr><td colspan="13"><bold><italic>Alternaria iridiaustralis</italic>
</bold>
</td>
</tr>
<tr><td>CBS 118404; E.G.S. 49.078; MAFF 354A<sup>R</sup>
</td>
<td>New Zealand, <italic>Iris</italic>
sp.</td>
<td>KP125058</td>
<td>KP124588</td>
<td>KP124434</td>
<td>KP124283</td>
<td>KP125213</td>
<td>KP124904</td>
<td>KP123980</td>
<td>KP124139</td>
<td>KP124750</td>
<td>KP125268</td>
<td>np</td>
</tr>
<tr><td>CBS 118486; E.G.S. 43.014<sup>T</sup>
</td>
<td>Australia, <italic>Iris</italic>
sp.</td>
<td>KP125059</td>
<td>KP124589</td>
<td>KP124435</td>
<td>KP124284</td>
<td>KP125214</td>
<td>KP124905</td>
<td>KP123981</td>
<td>KP124140</td>
<td>KP124751</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 118487; E.G.S. 44.147<sup>R</sup>
</td>
<td>Australia, <italic>Iris</italic>
sp.</td>
<td>KP125060</td>
<td>KP124590</td>
<td>KP124436</td>
<td>KP124285</td>
<td>KP125215</td>
<td>KP124906</td>
<td>KP123982</td>
<td>KP124141</td>
<td>KP124752</td>
<td></td>
<td></td>
</tr>
<tr><td colspan="13"><bold><italic>Alternaria jacinthicola</italic>
</bold>
</td>
</tr>
<tr><td>CBS 878.95; IMI 77934b (<italic>A. tenuissima</italic>
)</td>
<td>Mauritius, <italic>Arachis hypogaea</italic>
</td>
<td>KP125061</td>
<td>KP124591</td>
<td>KP124437</td>
<td>KP124286</td>
<td>KP125216</td>
<td>KP124907</td>
<td>KP123983</td>
<td>KP124142</td>
<td>KP124753</td>
<td>KP125269</td>
<td>np</td>
</tr>
<tr><td>CBS 133751; MUCL 53159<sup>T</sup>
</td>
<td>Mali, <italic>Eichhornia crassipes</italic>
</td>
<td>KP125062</td>
<td>KP124592</td>
<td>KP124438</td>
<td>KP124287</td>
<td>KP125217</td>
<td>KP124908</td>
<td>KP123984</td>
<td>KP124143</td>
<td>KP124754</td>
<td>KP125270</td>
<td>np</td>
</tr>
<tr><td>CPC 25267</td>
<td>Unknown, <italic>Cucumis melo</italic>
var. <italic>inodorus</italic>
</td>
<td>KP125063</td>
<td>KP124593</td>
<td>KP124439</td>
<td>KP124288</td>
<td>KP125218</td>
<td>KP124909</td>
<td>KP123985</td>
<td>KP124144</td>
<td>KP124755</td>
<td>KP125271</td>
<td>np</td>
</tr>
<tr><td colspan="13"><bold><italic>Alternaria longipes</italic>
</bold>
</td>
</tr>
<tr><td>CBS 113.35</td>
<td>Unknown, <italic>Nicotiana tabacum</italic>
</td>
<td>KP125064</td>
<td>KP124594</td>
<td>KP124440</td>
<td>KP124289</td>
<td>KP125219</td>
<td>KP124910</td>
<td>KP123986</td>
<td>KP124145</td>
<td>KP124756</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 539.94; QM 8438</td>
<td>USA, <italic>Nicotiana tabacum</italic>
</td>
<td>KP125065</td>
<td>KP124595</td>
<td>KP124441</td>
<td>KP124290</td>
<td>KP125220</td>
<td>KP124911</td>
<td>KP123987</td>
<td>KP124146</td>
<td>KP124757</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 540.94; E.G.S. 30.033; QM 9589<sup>R</sup>
</td>
<td>USA, <italic>Nicotiana tabacum</italic>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584541" id="interref9280"><bold>KC584541</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584285" id="interref9285"><bold>KC584285</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY278835" id="intref0220"><bold>AY278835</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY278811" id="intref0225"><bold>AY278811</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584667" id="interref9290"><bold>KC584667</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:KC584409" id="interref9295"><bold>KC584409</bold>
</ext-link>
</td>
<td><ext-link ext-link-type="uri" xlink:href="ncbi-n:AY563304" id="intref0230"><bold>AY563304</bold>
</ext-link>
</td>
<td>KP124147</td>
<td>KP124758</td>
<td>KP125272</td>
<td>KP125315</td>
</tr>
<tr><td>CBS 917.96</td>
<td>USA, <italic>Nicotiana tabacum</italic>
</td>
<td>KP125066</td>
<td>KP124596</td>
<td>KP124442</td>
<td>KP124291</td>
<td>KP125226</td>
<td>KP124912</td>
<td>KP123988</td>
<td>KP124148</td>
<td>KP124759</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 121332; E.G.S. 30.048<sup>R</sup>
</td>
<td>USA, <italic>Nicotiana tabacum</italic>
</td>
<td>KP125067</td>
<td>KP124597</td>
<td>KP124443</td>
<td>KP124292</td>
<td>KP125227</td>
<td>KP124913</td>
<td>KP123989</td>
<td>KP124149</td>
<td>KP124760</td>
<td></td>
<td></td>
</tr>
<tr><td>CBS 121333; E.G.S. 30.051<sup>R</sup>
</td>
<td>USA, <italic>Nicotiana tabacum</italic>
</td>
<td>KP125068</td>
<td>KP124598</td>
<td>KP124444</td>
<td>KP124293</td>
<td>KP125223</td>
<td>KP124914</td>
<td>KP123990</td>
<td>KP124150</td>
<td>KP124761</td>
<td></td>
<td></td>
</tr>
<tr><td colspan="13"><bold><italic>Alternaria tomato</italic>
</bold>
</td>
</tr>
<tr><td>CBS 103.30</td>
<td>Unknown, <italic>Solanum lycopersicum</italic>
</td>
<td>KP125069</td>
<td>KP124599</td>
<td>KP124445</td>
<td>KP124294</td>
<td>KP125224</td>
<td>KP124915</td>
<td>KP123991</td>
<td>KP124151</td>
<td>KP124762</td>
<td>KP125273</td>
<td>KP125316</td>
</tr>
<tr><td>CBS 114.35</td>
<td>Unknown, <italic>Solanum lycopersicum</italic>
</td>
<td>KP125070</td>
<td>KP124600</td>
<td>KP124446</td>
<td>KP124295</td>
<td>KP125225</td>
<td>KP124916</td>
<td>KP123992</td>
<td>KP124152</td>
<td>KP124763</td>
<td>KP125274</td>
<td>KP125317</td>
</tr>
</tbody>
</table>
<table-wrap-foot><fn id="tbl1fn1"><label>1</label>
<p id="ntpara0015">ATCC: American Type Culture Collection, Manassas, VA, USA; CBS: Culture collection of the Centraalbureau voor Schimmelcultures, Fungal Biodiversity Centre, Utrecht, The Netherlands; CPC: Personal collection of P.W. Crous, Utrecht, The Netherlands; DAOM: Canadian Collection of Fungal Cultures, Ottawa, Canada; DSM: German Collection of Microorganisms and Cell Cultures, Leibniz Institute, Braunschweig, Germany; E.G.S.: Personal collection of Dr. E.G. Simmons; HKUCC: The University of Hong Kong Culture Collection, Hong Kong, China; HSAUP: Department of Plant Pathology, Shandong Agricultural University, China; IFO: Institute for Fermentation Culture Collection, Osaka, Japan; IHEM: Biomedical Fungi and Yeast Collection of the Belgian Co-ordinated Collections of Micro-organisms (BCCM), Brussels, Belgium; IMI: Culture collection of CABI Europe UK Centre, Egham UK; LCP: Laboratory of Cryptogamy, National Museum of Natural History, Paris, France; MAFF: MAFF Genebank Project, Ministry of Agriculture, Forestry and Fisherie, Tsukuba, Japan; MUCL: (Agro)Industrial Fungi and Yeast Collection of the Belgian Co-ordinated Collections of Micro-organisms (BCCM), Louvain-la-Neuve, Belgium; QM: Quarter Master Culture Collection, Amherst, MA, USA; VKM: All-Russian Collection of Microorganisms, Moscow, Russia.</p>
</fn>
</table-wrap-foot>
<table-wrap-foot><fn id="tbl1fn2"><label>2</label>
<p id="ntpara0020">T: ex-type isolate; R: representative isolate; Species names between parentheses refer to the former species name.</p>
</fn>
</table-wrap-foot>
<table-wrap-foot><fn id="tbl1fn3"><label>3</label>
<p id="ntpara0025">Bold accession numbers are generated in other studies; np: no product.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="tbl2" position="float"><label>Table 2</label>
<caption><p>Assembly statistics of the <italic>Alternaria</italic>
genomes.</p>
</caption>
<table frame="hsides" rules="groups"><thead><tr><th>Species</th>
<th>Strain number(s)</th>
<th>Section</th>
<th>Sequencing method</th>
<th>Size (Mb)</th>
<th>Coverage (approx.)</th>
<th>% Repeats</th>
<th>% Identity</th>
<th>% SNPs<xref rid="tbl2fn2" ref-type="table-fn">2</xref>
</th>
</tr>
</thead>
<tbody><tr><td><italic>A. alternata</italic>
</td>
<td>CBS 916.96<xref rid="tbl2fn3" ref-type="table-fn">3</xref>
</td>
<td><italic>Alternaria</italic>
</td>
<td>Illumina</td>
<td align="char">33.3</td>
<td>40×</td>
<td align="char">1.4</td>
<td>na<xref rid="tbl2fn3" ref-type="table-fn">3</xref>
</td>
<td>na<xref rid="tbl2fn3" ref-type="table-fn">3</xref>
</td>
</tr>
<tr><td><italic>A. arborescens</italic>
<xref rid="tbl2fn1" ref-type="table-fn">1</xref>
</td>
<td>E.G.S. 39.128 = CBS 102605</td>
<td><italic>Alternaria</italic>
</td>
<td>–</td>
<td align="char">33.9</td>
<td>–</td>
<td align="char">2.7</td>
<td>96.7</td>
<td>–</td>
</tr>
<tr><td><italic>A. citriarbusti</italic>
(now <italic>A. alternata</italic>
)</td>
<td>CBS 102598</td>
<td><italic>Alternaria</italic>
</td>
<td>Ion Torrent</td>
<td align="char">34.8</td>
<td>38×</td>
<td align="char">1.7</td>
<td>98.1</td>
<td>1.4</td>
</tr>
<tr><td><italic>A. gaisen</italic>
</td>
<td>CBS 118488</td>
<td><italic>Alternaria</italic>
</td>
<td>Illumina</td>
<td align="char">35.2</td>
<td>182×</td>
<td align="char">1.8</td>
<td>96.7</td>
<td>2.8</td>
</tr>
<tr><td><italic>A. tenuissima</italic>
(now <italic>A. alternata</italic>
)</td>
<td>CBS 918.96</td>
<td><italic>Alternaria</italic>
</td>
<td>Illumina</td>
<td align="char">33.5</td>
<td>260×</td>
<td align="char">1.4</td>
<td>98.2</td>
<td>1.5</td>
</tr>
<tr><td><italic>A. alternantherae</italic>
</td>
<td>CBS 124392</td>
<td><italic>Alternantherae</italic>
</td>
<td>Illumina</td>
<td align="char">35.0</td>
<td>210×</td>
<td align="char">16.5</td>
<td>89.3</td>
<td>8.0</td>
</tr>
<tr><td><italic>A. solani</italic>
</td>
<td>CBS 109157</td>
<td><italic>Porri</italic>
</td>
<td>Ion Torrent</td>
<td align="char">32.6</td>
<td>50×</td>
<td align="char">1.5</td>
<td>87.9</td>
<td>9.0</td>
</tr>
<tr><td><italic>A. avenicola</italic>
</td>
<td>CBS 121459</td>
<td><italic>Panax</italic>
</td>
<td>Illumina</td>
<td align="char">39.1</td>
<td>200×</td>
<td align="char">11.9</td>
<td>87.2</td>
<td>9.5</td>
</tr>
<tr><td><italic>A. infectoria</italic>
</td>
<td>CBS 210.86</td>
<td><italic>Infectoriae</italic>
</td>
<td>Illumina</td>
<td align="char">36.5</td>
<td>200×</td>
<td align="char">5.3</td>
<td>85.1</td>
<td>10.3</td>
</tr>
<tr><td><italic>A. papaveraceae</italic>
</td>
<td>CBS 116607</td>
<td><italic>Crivellia</italic>
</td>
<td>Illumina</td>
<td align="char">33.8</td>
<td>220×</td>
<td align="char">5.3</td>
<td>85.8</td>
<td>10.3</td>
</tr>
<tr><td><italic>A. brassicicola</italic>
<xref rid="tbl2fn1" ref-type="table-fn">1</xref>
</td>
<td>ATCC 96836 = CBS 118699</td>
<td><italic>Brassicicola</italic>
</td>
<td>–</td>
<td align="char">32.0</td>
<td>–</td>
<td align="char">7.1</td>
<td>86.6</td>
<td>–</td>
</tr>
</tbody>
</table>
<table-wrap-foot><fn id="tbl2fn1"><label>1</label>
<p id="ntpara0030">Publicly available genomes; <italic>A. arborescens</italic>
downloaded from NCBI, <italic>A. brassisicola</italic>
downloaded from JGI (<ext-link ext-link-type="uri" xlink:href="http://genome.jgi-psf.org/Altbr1/Altbr1.home.html" id="intref0235">http://genome.jgi-psf.org/Altbr1/Altbr1.home.html</ext-link>
).</p>
</fn>
</table-wrap-foot>
<table-wrap-foot><fn id="tbl2fn2"><label>2</label>
<p id="ntpara0035">SNPs / covered base (>10×), duplicates removed.</p>
</fn>
</table-wrap-foot>
<table-wrap-foot><fn id="tbl2fn3"><label>3</label>
<p id="ntpara0040">Reference isolate.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="tbl3" position="float"><label>Table 3</label>
<caption><p>Assembly statistics of the <italic>Alternaria</italic>
transcriptome profiles.</p>
</caption>
<table frame="hsides" rules="groups"><thead><tr><th>Species</th>
<th>Strain number</th>
<th>Section</th>
<th>% SNP<xref rid="tbl3fn2" ref-type="table-fn">2</xref>
</th>
</tr>
</thead>
<tbody><tr><td><italic>A. alternata</italic>
</td>
<td>CBS 916.96<xref rid="tbl3fn1" ref-type="table-fn">1</xref>
</td>
<td><italic>Alternaria</italic>
</td>
<td align="char">0.0</td>
</tr>
<tr><td><italic>A. arborescens</italic>
</td>
<td>CBS 102605</td>
<td><italic>Alternaria</italic>
</td>
<td align="char">1.8</td>
</tr>
<tr><td><italic>A. citriarbusti</italic>
(now <italic>A. alternata</italic>
)</td>
<td>CBS 102598</td>
<td><italic>Alternaria</italic>
</td>
<td align="char">1.0</td>
</tr>
<tr><td><italic>A. citricancri</italic>
(now <italic>A. alternata</italic>
)</td>
<td>CBS 119543</td>
<td><italic>Alternaria</italic>
</td>
<td align="char">0.9</td>
</tr>
<tr><td><italic>A. gaisen</italic>
</td>
<td>CBS 118488</td>
<td><italic>Alternaria</italic>
</td>
<td align="char">1.8</td>
</tr>
<tr><td><italic>A. mali</italic>
(now <italic>A. alternata</italic>
)</td>
<td>CBS 106.24</td>
<td><italic>Alternaria</italic>
</td>
<td align="char">0.9</td>
</tr>
<tr><td><italic>A. tenuissima</italic>
(now <italic>A. alternata</italic>
)</td>
<td>CBS 918.96</td>
<td><italic>Alternaria</italic>
</td>
<td align="char">0.8</td>
</tr>
<tr><td><italic>A. tomaticola</italic>
(now <italic>A. alternata</italic>
)</td>
<td>CBS 118814</td>
<td><italic>Alternaria</italic>
</td>
<td align="char">0.9</td>
</tr>
<tr><td><italic>A. toxicogenica</italic>
(now <italic>A. alternata</italic>
)</td>
<td>CBS 102600</td>
<td><italic>Alternaria</italic>
</td>
<td align="char">0.9</td>
</tr>
<tr><td><italic>A. alternantherae</italic>
</td>
<td>CBS 124392</td>
<td><italic>Alternantherae</italic>
</td>
<td align="char">6.1</td>
</tr>
<tr><td><italic>A. infectoria</italic>
</td>
<td>CBS 210.86</td>
<td><italic>Infectoriae</italic>
</td>
<td align="char">8.5</td>
</tr>
<tr><td><italic>A. papaveraceae</italic>
</td>
<td>CBS 116607</td>
<td><italic>Crivellia</italic>
</td>
<td align="char">8.4</td>
</tr>
</tbody>
</table>
<table-wrap-foot><fn id="tbl3fn1"><label>1</label>
<p id="ntpara0045">Reference isolate.</p>
</fn>
</table-wrap-foot>
<table-wrap-foot><fn id="tbl3fn2"><label>2</label>
<p id="ntpara0050">SNPs / covered base (>10×), duplicates removed.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="tbl4" position="float"><label>Table 4</label>
<caption><p>Comparison of gene ability to distinguish species in sect. <italic>Alternaria</italic>
.</p>
</caption>
<table frame="hsides" rules="groups"><tbody><tr><td><inline-graphic xlink:href="fx1.gif"></inline-graphic>
</td>
</tr>
</tbody>
</table>
</table-wrap>
</floats-group>
</pmc>
<affiliations><list><country><li>Afrique du Sud</li>
<li>Pays-Bas</li>
</country>
<region><li>Gueldre (province)</li>
</region>
<settlement><li>Wageningue</li>
</settlement>
<orgName><li>Université de Wageningue</li>
</orgName>
</list>
<tree><country name="Pays-Bas"><noRegion><name sortKey="Woudenberg, J H C" sort="Woudenberg, J H C" uniqKey="Woudenberg J" first="J. H. C." last="Woudenberg">J. H. C. Woudenberg</name>
</noRegion>
<name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name>
<name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name>
<name sortKey="De Vries, M" sort="De Vries, M" uniqKey="De Vries M" first="M." last="De Vries">M. De Vries</name>
<name sortKey="Groenewald, J Z" sort="Groenewald, J Z" uniqKey="Groenewald J" first="J. Z." last="Groenewald">J. Z. Groenewald</name>
<name sortKey="Seidl, M F" sort="Seidl, M F" uniqKey="Seidl M" first="M. F." last="Seidl">M. F. Seidl</name>
<name sortKey="Stielow, J B" sort="Stielow, J B" uniqKey="Stielow J" first="J. B." last="Stielow">J. B. Stielow</name>
<name sortKey="Thomma, B P H J" sort="Thomma, B P H J" uniqKey="Thomma B" first="B. P. H. J." last="Thomma">B. P. H. J. Thomma</name>
<name sortKey="Woudenberg, J H C" sort="Woudenberg, J H C" uniqKey="Woudenberg J" first="J. H. C." last="Woudenberg">J. H. C. Woudenberg</name>
</country>
<country name="Afrique du Sud"><noRegion><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Bois/explor/OrangerV1/Data/Pmc/Checkpoint
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000649 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Pmc/Checkpoint/biblio.hfd -nk 000649 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Wicri/Bois |area= OrangerV1 |flux= Pmc |étape= Checkpoint |type= RBID |clé= PMC:4774270 |texte= Alternaria section Alternaria: Species, formae speciales or pathotypes? }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Pmc/Checkpoint/RBID.i -Sk "pubmed:26951037" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Pmc/Checkpoint/biblio.hfd \ | NlmPubMed2Wicri -a OrangerV1
This area was generated with Dilib version V0.6.25. |