Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects
Identifieur interne : 000603 ( Pmc/Checkpoint ); précédent : 000602; suivant : 000604Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects
Auteurs : Chittaranjan Kole [Inde] ; Mehanathan Muthamilarasan [Inde] ; Robert Henry [Australie] ; David Edwards [Australie] ; Rishu Sharma [Inde] ; Michael Abberton [Nigeria] ; Jacqueline Batley [Australie] ; Alison Bentley [Royaume-Uni] ; Michael Blakeney [Australie] ; John Bryant [Royaume-Uni] ; Hongwei Cai [Japon, République populaire de Chine] ; Mehmet Cakir [Australie] ; Leland J. Cseke [États-Unis] ; James Cockram [Royaume-Uni] ; Antonio Costa De Oliveira [Brésil] ; Ciro De Pace [Italie] ; Hannes Dempewolf [Allemagne] ; Shelby Ellison [États-Unis] ; Paul Gepts [États-Unis] ; Andy Greenland [Royaume-Uni] ; Anthony Hall [États-Unis] ; Kiyosumi Hori [Japon] ; Stephen Hughes [Royaume-Uni] ; Mike W. Humphreys [Royaume-Uni] ; Massimo Iorizzo [États-Unis] ; Abdelbagi M. Ismail [Philippines] ; Athole Marshall [Royaume-Uni] ; Sean Mayes [Malaisie] ; Henry T. Nguyen [États-Unis] ; Francis C. Ogbonnaya [Australie] ; Rodomiro Ortiz [Suède] ; Andrew H. Paterson [États-Unis] ; Philipp W. Simon [États-Unis] ; Joe Tohme ; Roberto Tuberosa [Italie] ; Babu Valliyodan [États-Unis] ; Rajeev K. Varshney [Inde] ; Stan D. Wullschleger [États-Unis] ; Masahiro Yano [Japon] ; Manoj Prasad [Inde]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2015.
Abstract
Climate change affects agricultural productivity worldwide. Increased prices of food commodities are the initial indication of drastic edible yield loss, which is expected to increase further due to global warming. This situation has compelled plant scientists to develop climate change-resilient crops, which can withstand broad-spectrum stresses such as drought, heat, cold, salinity, flood, submergence and pests, thus helping to deliver increased productivity. Genomics appears to be a promising tool for deciphering the stress responsiveness of crop species with adaptation traits or in wild relatives toward identifying underlying genes, alleles or quantitative trait loci. Molecular breeding approaches have proven helpful in enhancing the stress adaptation of crop plants, and recent advances in high-throughput sequencing and phenotyping platforms have transformed molecular breeding to genomics-assisted breeding (GAB). In view of this, the present review elaborates the progress and prospects of GAB for improving climate change resilience in crops, which is likely to play an ever increasing role in the effort to ensure global food security.
Url:
DOI: 10.3389/fpls.2015.00563
PubMed: 26322050
PubMed Central: 4531421
Affiliations:
- Allemagne, Australie, Brésil, Inde, Italie, Japon, Malaisie, Nigeria, Philippines, Royaume-Uni, République populaire de Chine, Suède, États-Unis
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<author><name sortKey="Mayes, Sean" sort="Mayes, Sean" uniqKey="Mayes S" first="Sean" last="Mayes">Sean Mayes</name>
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<author><name sortKey="Nguyen, Henry T" sort="Nguyen, Henry T" uniqKey="Nguyen H" first="Henry T." last="Nguyen">Henry T. Nguyen</name>
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<author><name sortKey="Ortiz, Rodomiro" sort="Ortiz, Rodomiro" uniqKey="Ortiz R" first="Rodomiro" last="Ortiz">Rodomiro Ortiz</name>
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<author><name sortKey="Paterson, Andrew H" sort="Paterson, Andrew H" uniqKey="Paterson A" first="Andrew H." last="Paterson">Andrew H. Paterson</name>
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<author><name sortKey="Simon, Philipp W" sort="Simon, Philipp W" uniqKey="Simon P" first="Philipp W." last="Simon">Philipp W. Simon</name>
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</nlm:aff>
<country xml:lang="fr">États-Unis</country>
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<author><name sortKey="Tohme, Joe" sort="Tohme, Joe" uniqKey="Tohme J" first="Joe" last="Tohme">Joe Tohme</name>
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<author><name sortKey="Tuberosa, Roberto" sort="Tuberosa, Roberto" uniqKey="Tuberosa R" first="Roberto" last="Tuberosa">Roberto Tuberosa</name>
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<author><name sortKey="Yano, Masahiro" sort="Yano, Masahiro" uniqKey="Yano M" first="Masahiro" last="Yano">Masahiro Yano</name>
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<country xml:lang="fr">Japon</country>
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<author><name sortKey="Prasad, Manoj" sort="Prasad, Manoj" uniqKey="Prasad M" first="Manoj" last="Prasad">Manoj Prasad</name>
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<author><name sortKey="Muthamilarasan, Mehanathan" sort="Muthamilarasan, Mehanathan" uniqKey="Muthamilarasan M" first="Mehanathan" last="Muthamilarasan">Mehanathan Muthamilarasan</name>
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</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Sharma, Rishu" sort="Sharma, Rishu" uniqKey="Sharma R" first="Rishu" last="Sharma">Rishu Sharma</name>
<affiliation wicri:level="1"><nlm:aff id="aff5"><institution>Department of Plant Pathology, Faculty of Agriculture, Bidhan Chandra Krishi Viswavidyalaya</institution>
<country>Mohanpur, India</country>
</nlm:aff>
<country xml:lang="fr">Inde</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Abberton, Michael" sort="Abberton, Michael" uniqKey="Abberton M" first="Michael" last="Abberton">Michael Abberton</name>
<affiliation wicri:level="1"><nlm:aff id="aff6"><institution>Genetic Resources Centre, International Institute of Tropical Agriculture</institution>
<country>Ibadan, Nigeria</country>
</nlm:aff>
<country xml:lang="fr">Nigeria</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Batley, Jacqueline" sort="Batley, Jacqueline" uniqKey="Batley J" first="Jacqueline" last="Batley">Jacqueline Batley</name>
<affiliation wicri:level="1"><nlm:aff id="aff7"><institution>Centre for Integrated Legume Research, University of Queensland</institution>
<country>Brisbane, QLD, Australia</country>
</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Bentley, Alison" sort="Bentley, Alison" uniqKey="Bentley A" first="Alison" last="Bentley">Alison Bentley</name>
<affiliation wicri:level="1"><nlm:aff id="aff8"><institution>The John Bingham Laboratory, National Institute of Agricultural Botany</institution>
<country>Cambridge, UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Blakeney, Michael" sort="Blakeney, Michael" uniqKey="Blakeney M" first="Michael" last="Blakeney">Michael Blakeney</name>
<affiliation wicri:level="1"><nlm:aff id="aff9"><institution>Law School, University of Western Australia</institution>
<country>Perth, Australia</country>
</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Bryant, John" sort="Bryant, John" uniqKey="Bryant J" first="John" last="Bryant">John Bryant</name>
<affiliation wicri:level="1"><nlm:aff id="aff10"><institution>CLES, Hatherly Laboratories, University of Exeter</institution>
<country>Exeter, UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Cai, Hongwei" sort="Cai, Hongwei" uniqKey="Cai H" first="Hongwei" last="Cai">Hongwei Cai</name>
<affiliation wicri:level="1"><nlm:aff id="aff11"><institution>Forage Crop Research Institute, Japan Grassland Agriculture and Forage Seed Association</institution>
<country>Nasushiobara, Japan</country>
</nlm:aff>
<country xml:lang="fr">Japon</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff12"><institution>Department of Plant Genetics and Breeding, College of Agronomy and Biotechnology, China Agricultural University</institution>
<country>Beijing, China</country>
</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Cakir, Mehmet" sort="Cakir, Mehmet" uniqKey="Cakir M" first="Mehmet" last="Cakir">Mehmet Cakir</name>
<affiliation wicri:level="1"><nlm:aff id="aff13"><institution>Faculty of Science and Engineering, School of Biological Sciences and Biotechnology, Murdoch University</institution>
<country>Murdoch, WA, Australia</country>
</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Cseke, Leland J" sort="Cseke, Leland J" uniqKey="Cseke L" first="Leland J." last="Cseke">Leland J. Cseke</name>
<affiliation wicri:level="1"><nlm:aff id="aff14"><institution>Department of Biological Sciences, The University of Alabama in Huntsville</institution>
<country>Huntsville, AL, USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Cockram, James" sort="Cockram, James" uniqKey="Cockram J" first="James" last="Cockram">James Cockram</name>
<affiliation wicri:level="1"><nlm:aff id="aff8"><institution>The John Bingham Laboratory, National Institute of Agricultural Botany</institution>
<country>Cambridge, UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="De Oliveira, Antonio Costa" sort="De Oliveira, Antonio Costa" uniqKey="De Oliveira A" first="Antonio Costa" last="De Oliveira">Antonio Costa De Oliveira</name>
<affiliation wicri:level="1"><nlm:aff id="aff15"><institution>Plant Genomics and Breeding Center, Federal University of Pelotas</institution>
<country>Pelotas, Brazil</country>
</nlm:aff>
<country xml:lang="fr">Brésil</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="De Pace, Ciro" sort="De Pace, Ciro" uniqKey="De Pace C" first="Ciro" last="De Pace">Ciro De Pace</name>
<affiliation wicri:level="1"><nlm:aff id="aff16"><institution>Department of Agriculture, Forests, Nature and Energy, University of Tuscia</institution>
<country>Viterbo, Italy</country>
</nlm:aff>
<country xml:lang="fr">Italie</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Dempewolf, Hannes" sort="Dempewolf, Hannes" uniqKey="Dempewolf H" first="Hannes" last="Dempewolf">Hannes Dempewolf</name>
<affiliation wicri:level="1"><nlm:aff id="aff17"><institution>Global Crop Diversity Trust, Platz der Vereinten Nationen</institution>
<country>Bonn, Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Ellison, Shelby" sort="Ellison, Shelby" uniqKey="Ellison S" first="Shelby" last="Ellison">Shelby Ellison</name>
<affiliation wicri:level="1"><nlm:aff id="aff18"><institution>Department of Horticulture, University of Wisconsin</institution>
<country>Madison, WI, USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Gepts, Paul" sort="Gepts, Paul" uniqKey="Gepts P" first="Paul" last="Gepts">Paul Gepts</name>
<affiliation wicri:level="1"><nlm:aff id="aff19"><institution>Section of Crop and Ecosystem Sciences, Department of Plant Sciences, University of California, Davis</institution>
<country>Davis, CA, USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Greenland, Andy" sort="Greenland, Andy" uniqKey="Greenland A" first="Andy" last="Greenland">Andy Greenland</name>
<affiliation wicri:level="1"><nlm:aff id="aff8"><institution>The John Bingham Laboratory, National Institute of Agricultural Botany</institution>
<country>Cambridge, UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Hall, Anthony" sort="Hall, Anthony" uniqKey="Hall A" first="Anthony" last="Hall">Anthony Hall</name>
<affiliation wicri:level="1"><nlm:aff id="aff20"><institution>Department of Botany and Plant Sciences, University of California</institution>
<country>Riverside, Riverside, USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Hori, Kiyosumi" sort="Hori, Kiyosumi" uniqKey="Hori K" first="Kiyosumi" last="Hori">Kiyosumi Hori</name>
<affiliation wicri:level="1"><nlm:aff id="aff21"><institution>Agrogenomics Research Center, National Institute of Agrobiological Sciences</institution>
<country>Tsukuba, Japan</country>
</nlm:aff>
<country xml:lang="fr">Japon</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Hughes, Stephen" sort="Hughes, Stephen" uniqKey="Hughes S" first="Stephen" last="Hughes">Stephen Hughes</name>
<affiliation wicri:level="1"><nlm:aff id="aff22"><institution>University of Exeter</institution>
<country>Exeter, UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Humphreys, Mike W" sort="Humphreys, Mike W" uniqKey="Humphreys M" first="Mike W." last="Humphreys">Mike W. Humphreys</name>
<affiliation wicri:level="1"><nlm:aff id="aff23"><institution>Institute of Biological, Environmental and Rural Sciences, Aberystwyth University</institution>
<country>Wales, UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Iorizzo, Massimo" sort="Iorizzo, Massimo" uniqKey="Iorizzo M" first="Massimo" last="Iorizzo">Massimo Iorizzo</name>
<affiliation wicri:level="1"><nlm:aff id="aff24"><institution>Department of Horticulture, University of Wisconsin</institution>
<country>Madison, WI, USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Ismail, Abdelbagi M" sort="Ismail, Abdelbagi M" uniqKey="Ismail A" first="Abdelbagi M." last="Ismail">Abdelbagi M. Ismail</name>
<affiliation wicri:level="1"><nlm:aff id="aff25"><institution>International Rice Research Institute</institution>
<country>Manila, Philippines</country>
</nlm:aff>
<country xml:lang="fr">Philippines</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Marshall, Athole" sort="Marshall, Athole" uniqKey="Marshall A" first="Athole" last="Marshall">Athole Marshall</name>
<affiliation wicri:level="1"><nlm:aff id="aff23"><institution>Institute of Biological, Environmental and Rural Sciences, Aberystwyth University</institution>
<country>Wales, UK</country>
</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Mayes, Sean" sort="Mayes, Sean" uniqKey="Mayes S" first="Sean" last="Mayes">Sean Mayes</name>
<affiliation wicri:level="1"><nlm:aff id="aff26"><institution>Biotechnology and Crop Genetics, Crops for the Future</institution>
<country>Semenyih, Malaysia</country>
</nlm:aff>
<country xml:lang="fr">Malaisie</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Nguyen, Henry T" sort="Nguyen, Henry T" uniqKey="Nguyen H" first="Henry T." last="Nguyen">Henry T. Nguyen</name>
<affiliation wicri:level="1"><nlm:aff id="aff27"><institution>National Center for Soybean Biotechnology and Division of Plant Science, University of Missouri</institution>
<country>Columbia, MO, USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Ogbonnaya, Francis C" sort="Ogbonnaya, Francis C" uniqKey="Ogbonnaya F" first="Francis C." last="Ogbonnaya">Francis C. Ogbonnaya</name>
<affiliation wicri:level="1"><nlm:aff id="aff28"><institution>Grains Research and Development Corporation</institution>
<country>Kingston, ACT, Australia</country>
</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Ortiz, Rodomiro" sort="Ortiz, Rodomiro" uniqKey="Ortiz R" first="Rodomiro" last="Ortiz">Rodomiro Ortiz</name>
<affiliation wicri:level="1"><nlm:aff id="aff29"><institution>Department of Plant Breeding, Swedish University of Agricultural Sciences</institution>
<country>Sundvagen, Sweden</country>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Paterson, Andrew H" sort="Paterson, Andrew H" uniqKey="Paterson A" first="Andrew H." last="Paterson">Andrew H. Paterson</name>
<affiliation wicri:level="1"><nlm:aff id="aff30"><institution>Plant Genome Mapping Laboratory, University of Georgia</institution>
<country>Athens, GA, USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Simon, Philipp W" sort="Simon, Philipp W" uniqKey="Simon P" first="Philipp W." last="Simon">Philipp W. Simon</name>
<affiliation wicri:level="1"><nlm:aff id="aff31"><institution>Department of Horticulture, USDA-ARS, University of Wisconsin</institution>
<country>Madison, WI, USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Tohme, Joe" sort="Tohme, Joe" uniqKey="Tohme J" first="Joe" last="Tohme">Joe Tohme</name>
<affiliation wicri:level="1"><nlm:aff id="aff32"><institution>Agrobiodiversity and Biotechnology Project, Centro International de Agricultura Tropical</institution>
<country>Cali, Columbia</country>
</nlm:aff>
<wicri:regionArea># see nlm:aff region in country</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Tuberosa, Roberto" sort="Tuberosa, Roberto" uniqKey="Tuberosa R" first="Roberto" last="Tuberosa">Roberto Tuberosa</name>
<affiliation wicri:level="1"><nlm:aff id="aff33"><institution>Department of Agricultural Sciences</institution>
<country>Bologna, Italy</country>
</nlm:aff>
<country xml:lang="fr">Italie</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Valliyodan, Babu" sort="Valliyodan, Babu" uniqKey="Valliyodan B" first="Babu" last="Valliyodan">Babu Valliyodan</name>
<affiliation wicri:level="1"><nlm:aff id="aff27"><institution>National Center for Soybean Biotechnology and Division of Plant Science, University of Missouri</institution>
<country>Columbia, MO, USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Varshney, Rajeev K" sort="Varshney, Rajeev K" uniqKey="Varshney R" first="Rajeev K." last="Varshney">Rajeev K. Varshney</name>
<affiliation wicri:level="1"><nlm:aff id="aff34"><institution>Center of Excellence in Genomics, International Crops Research Institute for the Semi-Arid Tropics</institution>
<country>Patancheru, India</country>
</nlm:aff>
<country xml:lang="fr">Inde</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Wullschleger, Stan D" sort="Wullschleger, Stan D" uniqKey="Wullschleger S" first="Stan D." last="Wullschleger">Stan D. Wullschleger</name>
<affiliation wicri:level="1"><nlm:aff id="aff35"><institution>Oak Ridge National Laboratory, Environmental Sciences Division, Climate Change Science Institute</institution>
<country>Oak Ridge, TN, USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Yano, Masahiro" sort="Yano, Masahiro" uniqKey="Yano M" first="Masahiro" last="Yano">Masahiro Yano</name>
<affiliation wicri:level="1"><nlm:aff id="aff36"><institution>National Agriculture and Food Research Organization, Institute of Crop Science</institution>
<country>Tsukuba, Japan</country>
</nlm:aff>
<country xml:lang="fr">Japon</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Prasad, Manoj" sort="Prasad, Manoj" uniqKey="Prasad M" first="Manoj" last="Prasad">Manoj Prasad</name>
<affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Department of Plant Molecular Genetics and Genomics, National Institute of Plant Genome Research</institution>
<country>New Delhi, India</country>
</nlm:aff>
<country xml:lang="fr">Inde</country>
<wicri:regionArea></wicri:regionArea>
</affiliation>
</author>
</analytic>
<series><title level="j">Frontiers in Plant Science</title>
<idno type="eISSN">1664-462X</idno>
<imprint><date when="2015">2015</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>Climate change affects agricultural productivity worldwide. Increased prices of food commodities are the initial indication of drastic edible yield loss, which is expected to increase further due to global warming. This situation has compelled plant scientists to develop climate change-resilient crops, which can withstand broad-spectrum stresses such as drought, heat, cold, salinity, flood, submergence and pests, thus helping to deliver increased productivity. Genomics appears to be a promising tool for deciphering the stress responsiveness of crop species with adaptation traits or in wild relatives toward identifying underlying genes, alleles or quantitative trait loci. Molecular breeding approaches have proven helpful in enhancing the stress adaptation of crop plants, and recent advances in high-throughput sequencing and phenotyping platforms have transformed molecular breeding to genomics-assisted breeding (GAB). In view of this, the present review elaborates the progress and prospects of GAB for improving climate change resilience in crops, which is likely to play an ever increasing role in the effort to ensure global food security.</p>
</div>
</front>
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<pmc article-type="review-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Front Plant Sci</journal-id>
<journal-id journal-id-type="iso-abbrev">Front Plant Sci</journal-id>
<journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id>
<journal-title-group><journal-title>Frontiers in Plant Science</journal-title>
</journal-title-group>
<issn pub-type="epub">1664-462X</issn>
<publisher><publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">26322050</article-id>
<article-id pub-id-type="pmc">4531421</article-id>
<article-id pub-id-type="doi">10.3389/fpls.2015.00563</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Plant Science</subject>
<subj-group><subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group><article-title>Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Kole</surname>
<given-names>Chittaranjan</given-names>
</name>
<xref ref-type="aff" rid="aff1"><sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001"><sup>*</sup>
</xref>
<xref ref-type="author-notes" rid="fn004"><sup>†</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/240614/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Muthamilarasan</surname>
<given-names>Mehanathan</given-names>
</name>
<xref ref-type="aff" rid="aff2"><sup>2</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/164737/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Henry</surname>
<given-names>Robert</given-names>
</name>
<xref ref-type="aff" rid="aff3"><sup>3</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/103236/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Edwards</surname>
<given-names>David</given-names>
</name>
<xref ref-type="aff" rid="aff4"><sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Sharma</surname>
<given-names>Rishu</given-names>
</name>
<xref ref-type="aff" rid="aff5"><sup>5</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/255210/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Abberton</surname>
<given-names>Michael</given-names>
</name>
<xref ref-type="aff" rid="aff6"><sup>6</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Batley</surname>
<given-names>Jacqueline</given-names>
</name>
<xref ref-type="aff" rid="aff7"><sup>7</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/255579/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Bentley</surname>
<given-names>Alison</given-names>
</name>
<xref ref-type="aff" rid="aff8"><sup>8</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/176074/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Blakeney</surname>
<given-names>Michael</given-names>
</name>
<xref ref-type="aff" rid="aff9"><sup>9</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Bryant</surname>
<given-names>John</given-names>
</name>
<xref ref-type="aff" rid="aff10"><sup>10</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/257311/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Cai</surname>
<given-names>Hongwei</given-names>
</name>
<xref ref-type="aff" rid="aff11"><sup>11</sup>
</xref>
<xref ref-type="aff" rid="aff12"><sup>12</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/255752/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Cakir</surname>
<given-names>Mehmet</given-names>
</name>
<xref ref-type="aff" rid="aff13"><sup>13</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Cseke</surname>
<given-names>Leland J.</given-names>
</name>
<xref ref-type="aff" rid="aff14"><sup>14</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Cockram</surname>
<given-names>James</given-names>
</name>
<xref ref-type="aff" rid="aff8"><sup>8</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>de Oliveira</surname>
<given-names>Antonio Costa</given-names>
</name>
<xref ref-type="aff" rid="aff15"><sup>15</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>De Pace</surname>
<given-names>Ciro</given-names>
</name>
<xref ref-type="aff" rid="aff16"><sup>16</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/240938/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Dempewolf</surname>
<given-names>Hannes</given-names>
</name>
<xref ref-type="aff" rid="aff17"><sup>17</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/255557/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Ellison</surname>
<given-names>Shelby</given-names>
</name>
<xref ref-type="aff" rid="aff18"><sup>18</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/249967/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Gepts</surname>
<given-names>Paul</given-names>
</name>
<xref ref-type="aff" rid="aff19"><sup>19</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/123721/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Greenland</surname>
<given-names>Andy</given-names>
</name>
<xref ref-type="aff" rid="aff8"><sup>8</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Hall</surname>
<given-names>Anthony</given-names>
</name>
<xref ref-type="aff" rid="aff20"><sup>20</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/45580/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Hori</surname>
<given-names>Kiyosumi</given-names>
</name>
<xref ref-type="aff" rid="aff21"><sup>21</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/156735/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Hughes</surname>
<given-names>Stephen</given-names>
</name>
<xref ref-type="aff" rid="aff22"><sup>22</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Humphreys</surname>
<given-names>Mike W.</given-names>
</name>
<xref ref-type="aff" rid="aff23"><sup>23</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/254600/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Iorizzo</surname>
<given-names>Massimo</given-names>
</name>
<xref ref-type="aff" rid="aff24"><sup>24</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/251111/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Ismail</surname>
<given-names>Abdelbagi M.</given-names>
</name>
<xref ref-type="aff" rid="aff25"><sup>25</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/67160/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Marshall</surname>
<given-names>Athole</given-names>
</name>
<xref ref-type="aff" rid="aff23"><sup>23</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/254632/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Mayes</surname>
<given-names>Sean</given-names>
</name>
<xref ref-type="aff" rid="aff26"><sup>26</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/249970/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Nguyen</surname>
<given-names>Henry T.</given-names>
</name>
<xref ref-type="aff" rid="aff27"><sup>27</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/190240/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Ogbonnaya</surname>
<given-names>Francis C.</given-names>
</name>
<xref ref-type="aff" rid="aff28"><sup>28</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/191962/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Ortiz</surname>
<given-names>Rodomiro</given-names>
</name>
<xref ref-type="aff" rid="aff29"><sup>29</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/202395/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Paterson</surname>
<given-names>Andrew H.</given-names>
</name>
<xref ref-type="aff" rid="aff30"><sup>30</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Simon</surname>
<given-names>Philipp W.</given-names>
</name>
<xref ref-type="aff" rid="aff31"><sup>31</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/257305/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Tohme</surname>
<given-names>Joe</given-names>
</name>
<xref ref-type="aff" rid="aff32"><sup>32</sup>
</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Tuberosa</surname>
<given-names>Roberto</given-names>
</name>
<xref ref-type="aff" rid="aff33"><sup>33</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/52290/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Valliyodan</surname>
<given-names>Babu</given-names>
</name>
<xref ref-type="aff" rid="aff27"><sup>27</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/249960/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Varshney</surname>
<given-names>Rajeev K.</given-names>
</name>
<xref ref-type="aff" rid="aff34"><sup>34</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/25772/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Wullschleger</surname>
<given-names>Stan D.</given-names>
</name>
<xref ref-type="aff" rid="aff35"><sup>35</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/46603/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Yano</surname>
<given-names>Masahiro</given-names>
</name>
<xref ref-type="aff" rid="aff36"><sup>36</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/125229/overview"></uri>
</contrib>
<contrib contrib-type="author"><name><surname>Prasad</surname>
<given-names>Manoj</given-names>
</name>
<xref ref-type="aff" rid="aff2"><sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn002"><sup>*</sup>
</xref>
<uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/145332/overview"></uri>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup>
<institution>Bidhan Chandra Krishi Viswavidyalaya</institution>
<country>Mohanpur, India</country>
</aff>
<aff id="aff2"><sup>2</sup>
<institution>Department of Plant Molecular Genetics and Genomics, National Institute of Plant Genome Research</institution>
<country>New Delhi, India</country>
</aff>
<aff id="aff3"><sup>3</sup>
<institution>Queensland Alliance for Agriculture and Food Innovation, University of Queensland</institution>
<country>St Lucia, QLD, Australia</country>
</aff>
<aff id="aff4"><sup>4</sup>
<institution>School of Agriculture and Food Sciences, University of Queensland</institution>
<country>Brisbane, QLD, Australia</country>
</aff>
<aff id="aff5"><sup>5</sup>
<institution>Department of Plant Pathology, Faculty of Agriculture, Bidhan Chandra Krishi Viswavidyalaya</institution>
<country>Mohanpur, India</country>
</aff>
<aff id="aff6"><sup>6</sup>
<institution>Genetic Resources Centre, International Institute of Tropical Agriculture</institution>
<country>Ibadan, Nigeria</country>
</aff>
<aff id="aff7"><sup>7</sup>
<institution>Centre for Integrated Legume Research, University of Queensland</institution>
<country>Brisbane, QLD, Australia</country>
</aff>
<aff id="aff8"><sup>8</sup>
<institution>The John Bingham Laboratory, National Institute of Agricultural Botany</institution>
<country>Cambridge, UK</country>
</aff>
<aff id="aff9"><sup>9</sup>
<institution>Law School, University of Western Australia</institution>
<country>Perth, Australia</country>
</aff>
<aff id="aff10"><sup>10</sup>
<institution>CLES, Hatherly Laboratories, University of Exeter</institution>
<country>Exeter, UK</country>
</aff>
<aff id="aff11"><sup>11</sup>
<institution>Forage Crop Research Institute, Japan Grassland Agriculture and Forage Seed Association</institution>
<country>Nasushiobara, Japan</country>
</aff>
<aff id="aff12"><sup>12</sup>
<institution>Department of Plant Genetics and Breeding, College of Agronomy and Biotechnology, China Agricultural University</institution>
<country>Beijing, China</country>
</aff>
<aff id="aff13"><sup>13</sup>
<institution>Faculty of Science and Engineering, School of Biological Sciences and Biotechnology, Murdoch University</institution>
<country>Murdoch, WA, Australia</country>
</aff>
<aff id="aff14"><sup>14</sup>
<institution>Department of Biological Sciences, The University of Alabama in Huntsville</institution>
<country>Huntsville, AL, USA</country>
</aff>
<aff id="aff15"><sup>15</sup>
<institution>Plant Genomics and Breeding Center, Federal University of Pelotas</institution>
<country>Pelotas, Brazil</country>
</aff>
<aff id="aff16"><sup>16</sup>
<institution>Department of Agriculture, Forests, Nature and Energy, University of Tuscia</institution>
<country>Viterbo, Italy</country>
</aff>
<aff id="aff17"><sup>17</sup>
<institution>Global Crop Diversity Trust, Platz der Vereinten Nationen</institution>
<country>Bonn, Germany</country>
</aff>
<aff id="aff18"><sup>18</sup>
<institution>Department of Horticulture, University of Wisconsin</institution>
<country>Madison, WI, USA</country>
</aff>
<aff id="aff19"><sup>19</sup>
<institution>Section of Crop and Ecosystem Sciences, Department of Plant Sciences, University of California, Davis</institution>
<country>Davis, CA, USA</country>
</aff>
<aff id="aff20"><sup>20</sup>
<institution>Department of Botany and Plant Sciences, University of California</institution>
<country>Riverside, Riverside, USA</country>
</aff>
<aff id="aff21"><sup>21</sup>
<institution>Agrogenomics Research Center, National Institute of Agrobiological Sciences</institution>
<country>Tsukuba, Japan</country>
</aff>
<aff id="aff22"><sup>22</sup>
<institution>University of Exeter</institution>
<country>Exeter, UK</country>
</aff>
<aff id="aff23"><sup>23</sup>
<institution>Institute of Biological, Environmental and Rural Sciences, Aberystwyth University</institution>
<country>Wales, UK</country>
</aff>
<aff id="aff24"><sup>24</sup>
<institution>Department of Horticulture, University of Wisconsin</institution>
<country>Madison, WI, USA</country>
</aff>
<aff id="aff25"><sup>25</sup>
<institution>International Rice Research Institute</institution>
<country>Manila, Philippines</country>
</aff>
<aff id="aff26"><sup>26</sup>
<institution>Biotechnology and Crop Genetics, Crops for the Future</institution>
<country>Semenyih, Malaysia</country>
</aff>
<aff id="aff27"><sup>27</sup>
<institution>National Center for Soybean Biotechnology and Division of Plant Science, University of Missouri</institution>
<country>Columbia, MO, USA</country>
</aff>
<aff id="aff28"><sup>28</sup>
<institution>Grains Research and Development Corporation</institution>
<country>Kingston, ACT, Australia</country>
</aff>
<aff id="aff29"><sup>29</sup>
<institution>Department of Plant Breeding, Swedish University of Agricultural Sciences</institution>
<country>Sundvagen, Sweden</country>
</aff>
<aff id="aff30"><sup>30</sup>
<institution>Plant Genome Mapping Laboratory, University of Georgia</institution>
<country>Athens, GA, USA</country>
</aff>
<aff id="aff31"><sup>31</sup>
<institution>Department of Horticulture, USDA-ARS, University of Wisconsin</institution>
<country>Madison, WI, USA</country>
</aff>
<aff id="aff32"><sup>32</sup>
<institution>Agrobiodiversity and Biotechnology Project, Centro International de Agricultura Tropical</institution>
<country>Cali, Columbia</country>
</aff>
<aff id="aff33"><sup>33</sup>
<institution>Department of Agricultural Sciences</institution>
<country>Bologna, Italy</country>
</aff>
<aff id="aff34"><sup>34</sup>
<institution>Center of Excellence in Genomics, International Crops Research Institute for the Semi-Arid Tropics</institution>
<country>Patancheru, India</country>
</aff>
<aff id="aff35"><sup>35</sup>
<institution>Oak Ridge National Laboratory, Environmental Sciences Division, Climate Change Science Institute</institution>
<country>Oak Ridge, TN, USA</country>
</aff>
<aff id="aff36"><sup>36</sup>
<institution>National Agriculture and Food Research Organization, Institute of Crop Science</institution>
<country>Tsukuba, Japan</country>
</aff>
<author-notes><fn fn-type="edited-by"><p>Edited by: Ramin Yadegari, The University of Arizona, USA</p>
</fn>
<fn fn-type="edited-by"><p>Reviewed by: Lam-Son Tran, RIKEN Center for Sustainable Resource Science, Japan; Marc Libault, University of Oklahoma, USA</p>
</fn>
<corresp id="fn001">*Correspondence: Chittaranjan Kole, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur 741252 Nadia, West Bengal, India <email xlink:type="simple">ckole2012@gmail.com</email>
;</corresp>
<corresp id="fn002">Manoj Prasad, Department of Plant Molecular Genetics and Genomics, National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India <email xlink:type="simple">manoj_prasad@nipgr.ac.in</email>
</corresp>
<fn fn-type="other" id="fn003"><p>This article was submitted to Plant Genetics and Genomics, a section of the journal Frontiers in Plant Science</p>
</fn>
<fn fn-type="present-address" id="fn004"><p>†Present Address: Chittaranjan Kole, Jacob School of Biotechnology and Bioengineering, Sam Higginbottom Institute of Agriculture, Technology and Sciences, Allahabad, India</p>
</fn>
</author-notes>
<pub-date pub-type="epub"><day>11</day>
<month>8</month>
<year>2015</year>
</pub-date>
<pub-date pub-type="collection"><year>2015</year>
</pub-date>
<volume>6</volume>
<elocation-id>563</elocation-id>
<history><date date-type="received"><day>25</day>
<month>5</month>
<year>2015</year>
</date>
<date date-type="accepted"><day>08</day>
<month>7</month>
<year>2015</year>
</date>
</history>
<permissions><copyright-statement>Copyright © 2015 Kole, Muthamilarasan, Henry, Edwards, Sharma, Abberton, Batley, Bentley, Blakeney, Bryant, Cai, Cakir, Cseke, Cockram, de Oliveira, De Pace, Dempewolf, Ellison, Gepts, Greenland, Hall, Hori, Hughes, Humphreys, Iorizzo, Ismail, Marshall, Mayes, Nguyen, Ogbonnaya, Ortiz, Paterson, Simon, Tohme, Tuberosa, Valliyodan, Varshney, Wullschleger, Yano and Prasad.</copyright-statement>
<copyright-year>2015</copyright-year>
<copyright-holder>Kole, Muthamilarasan, Henry, Edwards, Sharma, Abberton, Batley, Bentley, Blakeney, Bryant, Cai, Cakir, Cseke, Cockram, de Oliveira, De Pace, Dempewolf, Ellison, Gepts, Greenland, Hall, Hori, Hughes, Humphreys, Iorizzo, Ismail, Marshall, Mayes, Nguyen, Ogbonnaya, Ortiz, Paterson, Simon, Tohme, Tuberosa, Valliyodan, Varshney, Wullschleger, Yano and Prasad</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</license-p>
</license>
</permissions>
<abstract><p>Climate change affects agricultural productivity worldwide. Increased prices of food commodities are the initial indication of drastic edible yield loss, which is expected to increase further due to global warming. This situation has compelled plant scientists to develop climate change-resilient crops, which can withstand broad-spectrum stresses such as drought, heat, cold, salinity, flood, submergence and pests, thus helping to deliver increased productivity. Genomics appears to be a promising tool for deciphering the stress responsiveness of crop species with adaptation traits or in wild relatives toward identifying underlying genes, alleles or quantitative trait loci. Molecular breeding approaches have proven helpful in enhancing the stress adaptation of crop plants, and recent advances in high-throughput sequencing and phenotyping platforms have transformed molecular breeding to genomics-assisted breeding (GAB). In view of this, the present review elaborates the progress and prospects of GAB for improving climate change resilience in crops, which is likely to play an ever increasing role in the effort to ensure global food security.</p>
</abstract>
<kwd-group><kwd>climate change</kwd>
<kwd>crop improvement</kwd>
<kwd>stress tolerance</kwd>
<kwd>breeding</kwd>
<kwd>genomics</kwd>
</kwd-group>
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<table-count count="0"></table-count>
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<ref-count count="204"></ref-count>
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</front>
</pmc>
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<name sortKey="Iorizzo, Massimo" sort="Iorizzo, Massimo" uniqKey="Iorizzo M" first="Massimo" last="Iorizzo">Massimo Iorizzo</name>
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