DNA Methylation and Chromatin Regulation during Fleshy Fruit Development and Ripening
Identifieur interne : 000216 ( Pmc/Checkpoint ); précédent : 000215; suivant : 000217DNA Methylation and Chromatin Regulation during Fleshy Fruit Development and Ripening
Auteurs : Philippe Gallusci [France] ; Charlie Hodgman [Royaume-Uni] ; Emeline Teyssier [France] ; Graham B. Seymour [Royaume-Uni]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2016.
Abstract
Fruit ripening is a developmental process that results in the leaf-like carpel organ of the flower becoming a mature ovary primed for dispersal of the seeds. Ripening in fleshy fruits involves a profound metabolic phase change that is under strict hormonal and genetic control. This work reviews recent developments in our understanding of the epigenetic regulation of fruit ripening. We start by describing the current state of the art about processes involved in histone post-translational modifications and the remodeling of chromatin structure and their impact on fruit development and ripening. However, the focus of the review is the consequences of changes in DNA methylation levels on the expression of ripening-related genes. This includes those changes that result in heritable phenotypic variation in the absence of DNA sequence alterations, and the mechanisms for their initiation and maintenance. The majority of the studies described in the literature involve work on tomato, but evidence is emerging that ripening in other fruit species may also be under epigenetic control. We discuss how epigenetic differences may provide new targets for breeding and crop improvement.
Url:
DOI: 10.3389/fpls.2016.00807
PubMed: 27379113
PubMed Central: 4905957
Affiliations:
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Seymour</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>School of Biosciences, University of Nottingham</institution> Sutton<country>Bonington, UK</country></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea></wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27379113</idno><idno type="pmc">4905957</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4905957</idno><idno type="RBID">PMC:4905957</idno><idno type="doi">10.3389/fpls.2016.00807</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000426</idno><idno type="wicri:Area/Pmc/Curation">000425</idno><idno type="wicri:Area/Pmc/Checkpoint">000216</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">DNA Methylation and Chromatin Regulation during Fleshy Fruit Development and Ripening</title><author><name sortKey="Gallusci, Philippe" sort="Gallusci, Philippe" uniqKey="Gallusci P" first="Philippe" last="Gallusci">Philippe Gallusci</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>EGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux</institution> Villenave d’<country>Ornon, France</country></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Hodgman, Charlie" sort="Hodgman, Charlie" uniqKey="Hodgman C" first="Charlie" last="Hodgman">Charlie Hodgman</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>School of Biosciences, University of Nottingham</institution> Sutton<country>Bonington, UK</country></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Teyssier, Emeline" sort="Teyssier, Emeline" uniqKey="Teyssier E" first="Emeline" last="Teyssier">Emeline Teyssier</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>EGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux</institution> Villenave d’<country>Ornon, France</country></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Seymour, Graham B" sort="Seymour, Graham B" uniqKey="Seymour G" first="Graham B." last="Seymour">Graham B. Seymour</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>School of Biosciences, University of Nottingham</institution> Sutton<country>Bonington, UK</country></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Fruit ripening is a developmental process that results in the leaf-like carpel organ of the flower becoming a mature ovary primed for dispersal of the seeds. Ripening in fleshy fruits involves a profound metabolic phase change that is under strict hormonal and genetic control. This work reviews recent developments in our understanding of the epigenetic regulation of fruit ripening. We start by describing the current state of the art about processes involved in histone post-translational modifications and the remodeling of chromatin structure and their impact on fruit development and ripening. However, the focus of the review is the consequences of changes in DNA methylation levels on the expression of ripening-related genes. This includes those changes that result in heritable phenotypic variation in the absence of DNA sequence alterations, and the mechanisms for their initiation and maintenance. The majority of the studies described in the literature involve work on tomato, but evidence is emerging that ripening in other fruit species may also be under epigenetic control. We discuss how epigenetic differences may provide new targets for breeding and crop improvement.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Ahmad, A" uniqKey="Ahmad A">A. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Front Plant Sci</journal-id><journal-id journal-id-type="iso-abbrev">Front Plant Sci</journal-id><journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id><journal-title-group><journal-title>Frontiers in Plant Science</journal-title></journal-title-group><issn pub-type="epub">1664-462X</issn><publisher><publisher-name>Frontiers Media S.A.</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">27379113</article-id><article-id pub-id-type="pmc">4905957</article-id><article-id pub-id-type="doi">10.3389/fpls.2016.00807</article-id><article-categories><subj-group subj-group-type="heading"><subject>Plant Science</subject><subj-group><subject>Review</subject></subj-group></subj-group></article-categories><title-group><article-title>DNA Methylation and Chromatin Regulation during Fleshy Fruit Development and Ripening</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Gallusci</surname><given-names>Philippe</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="author-notes" rid="fn001"><sup>*</sup></xref><uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/161836/overview"></uri></contrib><contrib contrib-type="author"><name><surname>Hodgman</surname><given-names>Charlie</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref><uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/127470/overview"></uri></contrib><contrib contrib-type="author"><name><surname>Teyssier</surname><given-names>Emeline</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/353224/overview"></uri></contrib><contrib contrib-type="author"><name><surname>Seymour</surname><given-names>Graham B.</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref><uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/84200/overview"></uri></contrib></contrib-group><aff id="aff1"><sup>1</sup><institution>EGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux</institution> Villenave d’<country>Ornon, France</country></aff><aff id="aff2"><sup>2</sup><institution>School of Biosciences, University of Nottingham</institution> Sutton<country>Bonington, UK</country></aff><author-notes><fn fn-type="edited-by"><p>Edited by: <italic>Antonio Granell, Consejo Superior de Investigaciones Científicas, Spain</italic></p></fn><fn fn-type="edited-by"><p>Reviewed by: <italic>Miyako Kusano, University of Tsukuba and RIKEN Center for Sustainable Resource Science, Japan; Akira Kanazawa, Hokkaido University, Japan</italic></p></fn><corresp id="fn001">*Correspondence: <italic>Philippe Gallusci, <email xlink:type="simple">philippe.gallusci@bordeaux.inra.fr</email></italic></corresp><fn fn-type="other" id="fn002"><p>This article was submitted to Plant Physiology, a section of the journal Frontiers in Plant Science</p></fn></author-notes><pub-date pub-type="epub"><day>14</day><month>6</month><year>2016</year></pub-date><pub-date pub-type="collection"><year>2016</year></pub-date><volume>7</volume><elocation-id>807</elocation-id><history><date date-type="received"><day>11</day><month>2</month><year>2016</year></date><date date-type="accepted"><day>23</day><month>5</month><year>2016</year></date></history><permissions><copyright-statement>Copyright © 2016 Gallusci, Hodgman, Teyssier and Seymour.</copyright-statement><copyright-year>2016</copyright-year><copyright-holder>Gallusci, Hodgman, Teyssier and Seymour</copyright-holder><license xlink:href="http://creativecommons.org/licenses/by/4.0/"><license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</license-p></license></permissions><abstract><p>Fruit ripening is a developmental process that results in the leaf-like carpel organ of the flower becoming a mature ovary primed for dispersal of the seeds. Ripening in fleshy fruits involves a profound metabolic phase change that is under strict hormonal and genetic control. This work reviews recent developments in our understanding of the epigenetic regulation of fruit ripening. We start by describing the current state of the art about processes involved in histone post-translational modifications and the remodeling of chromatin structure and their impact on fruit development and ripening. However, the focus of the review is the consequences of changes in DNA methylation levels on the expression of ripening-related genes. This includes those changes that result in heritable phenotypic variation in the absence of DNA sequence alterations, and the mechanisms for their initiation and maintenance. The majority of the studies described in the literature involve work on tomato, but evidence is emerging that ripening in other fruit species may also be under epigenetic control. We discuss how epigenetic differences may provide new targets for breeding and crop improvement.</p></abstract><kwd-group><kwd>DNA methylation</kwd><kwd>epigenetics</kwd><kwd>ripening</kwd><kwd>tomato</kwd><kwd>crop improvement</kwd></kwd-group><counts><fig-count count="5"></fig-count><table-count count="2"></table-count><equation-count count="0"></equation-count><ref-count count="109"></ref-count><page-count count="14"></page-count><word-count count="0"></word-count></counts></article-meta></front></pmc><affiliations><list><country><li>France</li><li>Royaume-Uni</li></country></list><tree><country name="France"><noRegion><name sortKey="Gallusci, Philippe" sort="Gallusci, Philippe" uniqKey="Gallusci P" first="Philippe" last="Gallusci">Philippe Gallusci</name></noRegion><name sortKey="Teyssier, Emeline" sort="Teyssier, Emeline" uniqKey="Teyssier E" first="Emeline" last="Teyssier">Emeline Teyssier</name></country><country name="Royaume-Uni"><noRegion><name sortKey="Hodgman, Charlie" sort="Hodgman, Charlie" uniqKey="Hodgman C" first="Charlie" last="Hodgman">Charlie Hodgman</name></noRegion><name sortKey="Seymour, Graham B" sort="Seymour, Graham B" uniqKey="Seymour G" first="Graham B." last="Seymour">Graham B. 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