Network analysis of the metabolome and transcriptome reveals novel regulation of potato pigmentation
Identifieur interne : 000091 ( Pmc/Checkpoint ); précédent : 000090; suivant : 000092Network analysis of the metabolome and transcriptome reveals novel regulation of potato pigmentation
Auteurs : Kyoungwon Cho [Corée du Sud] ; Kwang-Soo Cho [Corée du Sud] ; Hwang-Bae Sohn [Corée du Sud] ; In Jin Ha [Corée du Sud] ; Su-Young Hong [Corée du Sud] ; Hyerim Lee [Corée du Sud] ; Young-Mi Kim [Corée du Sud] ; Myung Hee Nam [Corée du Sud]Source :
- Journal of Experimental Botany [ 0022-0957 ] ; 2016.
Abstract
An integrated approach of metabolomics and transcriptomics was applied to understand regulatory networks associated with biosynthesis of anthocyanins that are differentially regulated in light-red- and dark-purple-colored potato cultivars.
Url:
DOI: 10.1093/jxb/erv549
PubMed: 26733692
PubMed Central: 4762390
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Network analysis of the metabolome and transcriptome reveals novel regulation of potato pigmentation</title><author><name sortKey="Cho, Kyoungwon" sort="Cho, Kyoungwon" uniqKey="Cho K" first="Kyoungwon" last="Cho">Kyoungwon Cho</name><affiliation wicri:level="1"><nlm:aff id="AF0001"><institution>Environmental Risk and Welfare Research Team, Korea Basic Science Institute (KBSI)</institution>,<addr-line>Seoul 02855</addr-line>,<country>Republic of Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Cho, Kwang Soo" sort="Cho, Kwang Soo" uniqKey="Cho K" first="Kwang-Soo" last="Cho">Kwang-Soo Cho</name><affiliation wicri:level="1"><nlm:aff id="AF0002"><institution>Highland Agriculture Research Institute, National Institute of Crop Science, Rural Development Administration</institution>,<addr-line>Pyeongchang 25342</addr-line>,<country>Republic of Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Sohn, Hwang Bae" sort="Sohn, Hwang Bae" uniqKey="Sohn H" first="Hwang-Bae" last="Sohn">Hwang-Bae Sohn</name><affiliation wicri:level="1"><nlm:aff id="AF0002"><institution>Highland Agriculture Research Institute, National Institute of Crop Science, Rural Development Administration</institution>,<addr-line>Pyeongchang 25342</addr-line>,<country>Republic of Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Ha, In Jin" sort="Ha, In Jin" uniqKey="Ha I" first="In Jin" last="Ha">In Jin Ha</name><affiliation wicri:level="1"><nlm:aff id="AF0003"><institution>Omics System Research Team, Korea Basic Science Institute (KBSI)</institution>,<addr-line>Seoul 03759</addr-line>,<country>Republic of Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Hong, Su Young" sort="Hong, Su Young" uniqKey="Hong S" first="Su-Young" last="Hong">Su-Young Hong</name><affiliation wicri:level="1"><nlm:aff id="AF0002"><institution>Highland Agriculture Research Institute, National Institute of Crop Science, Rural Development Administration</institution>,<addr-line>Pyeongchang 25342</addr-line>,<country>Republic of Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Lee, Hyerim" sort="Lee, Hyerim" uniqKey="Lee H" first="Hyerim" last="Lee">Hyerim Lee</name><affiliation wicri:level="1"><nlm:aff id="AF0001"><institution>Environmental Risk and Welfare Research Team, Korea Basic Science Institute (KBSI)</institution>,<addr-line>Seoul 02855</addr-line>,<country>Republic of Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Kim, Young Mi" sort="Kim, Young Mi" uniqKey="Kim Y" first="Young-Mi" last="Kim">Young-Mi Kim</name><affiliation wicri:level="1"><nlm:aff id="AF0004"><institution>Department of Agricultural Biotechnology, National Academy of Agricultural Science, Rural Development Administration (RDA)</institution>,<addr-line>Jeongju 54874</addr-line>,<country>Republic of Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Nam, Myung Hee" sort="Nam, Myung Hee" uniqKey="Nam M" first="Myung Hee" last="Nam">Myung Hee Nam</name><affiliation wicri:level="1"><nlm:aff id="AF0001"><institution>Environmental Risk and Welfare Research Team, Korea Basic Science Institute (KBSI)</institution>,<addr-line>Seoul 02855</addr-line>,<country>Republic of Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26733692</idno><idno type="pmc">4762390</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4762390</idno><idno type="RBID">PMC:4762390</idno><idno type="doi">10.1093/jxb/erv549</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000352</idno><idno type="wicri:Area/Pmc/Curation">000351</idno><idno type="wicri:Area/Pmc/Checkpoint">000091</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Network analysis of the metabolome and transcriptome reveals novel regulation of potato pigmentation</title><author><name sortKey="Cho, Kyoungwon" sort="Cho, Kyoungwon" uniqKey="Cho K" first="Kyoungwon" last="Cho">Kyoungwon Cho</name><affiliation wicri:level="1"><nlm:aff id="AF0001"><institution>Environmental Risk and Welfare Research Team, Korea Basic Science Institute (KBSI)</institution>,<addr-line>Seoul 02855</addr-line>,<country>Republic of Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Cho, Kwang Soo" sort="Cho, Kwang Soo" uniqKey="Cho K" first="Kwang-Soo" last="Cho">Kwang-Soo Cho</name><affiliation wicri:level="1"><nlm:aff id="AF0002"><institution>Highland Agriculture Research Institute, National Institute of Crop Science, Rural Development Administration</institution>,<addr-line>Pyeongchang 25342</addr-line>,<country>Republic of Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Sohn, Hwang Bae" sort="Sohn, Hwang Bae" uniqKey="Sohn H" first="Hwang-Bae" last="Sohn">Hwang-Bae Sohn</name><affiliation wicri:level="1"><nlm:aff id="AF0002"><institution>Highland Agriculture Research Institute, National Institute of Crop Science, Rural Development Administration</institution>,<addr-line>Pyeongchang 25342</addr-line>,<country>Republic of Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Ha, In Jin" sort="Ha, In Jin" uniqKey="Ha I" first="In Jin" last="Ha">In Jin Ha</name><affiliation wicri:level="1"><nlm:aff id="AF0003"><institution>Omics System Research Team, Korea Basic Science Institute (KBSI)</institution>,<addr-line>Seoul 03759</addr-line>,<country>Republic of Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Hong, Su Young" sort="Hong, Su Young" uniqKey="Hong S" first="Su-Young" last="Hong">Su-Young Hong</name><affiliation wicri:level="1"><nlm:aff id="AF0002"><institution>Highland Agriculture Research Institute, National Institute of Crop Science, Rural Development Administration</institution>,<addr-line>Pyeongchang 25342</addr-line>,<country>Republic of Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Lee, Hyerim" sort="Lee, Hyerim" uniqKey="Lee H" first="Hyerim" last="Lee">Hyerim Lee</name><affiliation wicri:level="1"><nlm:aff id="AF0001"><institution>Environmental Risk and Welfare Research Team, Korea Basic Science Institute (KBSI)</institution>,<addr-line>Seoul 02855</addr-line>,<country>Republic of Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Kim, Young Mi" sort="Kim, Young Mi" uniqKey="Kim Y" first="Young-Mi" last="Kim">Young-Mi Kim</name><affiliation wicri:level="1"><nlm:aff id="AF0004"><institution>Department of Agricultural Biotechnology, National Academy of Agricultural Science, Rural Development Administration (RDA)</institution>,<addr-line>Jeongju 54874</addr-line>,<country>Republic of Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Nam, Myung Hee" sort="Nam, Myung Hee" uniqKey="Nam M" first="Myung Hee" last="Nam">Myung Hee Nam</name><affiliation wicri:level="1"><nlm:aff id="AF0001"><institution>Environmental Risk and Welfare Research Team, Korea Basic Science Institute (KBSI)</institution>,<addr-line>Seoul 02855</addr-line>,<country>Republic of Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">Journal of Experimental Botany</title><idno type="ISSN">0022-0957</idno><idno type="eISSN">1460-2431</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><title>Highlight</title><p>An integrated approach of metabolomics and transcriptomics was applied to understand regulatory networks associated with biosynthesis of anthocyanins that are differentially regulated in light-red- and dark-purple-colored potato cultivars.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Alba, R" uniqKey="Alba R">R Alba</name></author><author><name sortKey="Payton, P" uniqKey="Payton P">P Payton</name></author><author><name sortKey="Fei, Z" uniqKey="Fei Z">Z Fei</name></author><author><name sortKey="Mcquinn, R" uniqKey="Mcquinn R">R McQuinn</name></author><author><name sortKey="Debbie, P" uniqKey="Debbie P">P Debbie</name></author><author><name sortKey="Martin, Gb" uniqKey="Martin G">GB Martin</name></author><author><name sortKey="Tanksley, Sd" uniqKey="Tanksley S">SD Tanksley</name></author><author><name sortKey="Giovannoni, Jj" uniqKey="Giovannoni J">JJ Giovannoni</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Anders, S" uniqKey="Anders S">S Anders</name></author><author><name sortKey="Huber, W" uniqKey="Huber W">W Huber</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chiu, Lw" uniqKey="Chiu L">LW Chiu</name></author><author><name sortKey="Li, L" uniqKey="Li L">L Li</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cho, K" uniqKey="Cho K">K Cho</name></author><author><name sortKey="Shibato, J" uniqKey="Shibato J">J Shibato</name></author><author><name sortKey="Agrawal, Gk" uniqKey="Agrawal G">GK Agrawal</name></author><author><name sortKey="Jung, Y H" uniqKey="Jung Y">Y-H Jung</name></author><author><name sortKey="Kubo, A" uniqKey="Kubo A">A Kubo</name></author><author><name sortKey="Jwa, N S" uniqKey="Jwa N">N-S Jwa</name></author><author><name sortKey="Tamogami, S" uniqKey="Tamogami S">S Tamogami</name></author><author><name sortKey="Satoh, K" uniqKey="Satoh K">K Satoh</name></author><author><name sortKey="Kikuchi, S" uniqKey="Kikuchi S">S Kikuchi</name></author><author><name sortKey="Higashi, T" uniqKey="Higashi T">T Higashi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chong, Esl" uniqKey="Chong E">ESL Chong</name></author><author><name sortKey="Mcghie, Tk" uniqKey="Mcghie T">TK McGhie</name></author><author><name sortKey="Heyes, Ja" uniqKey="Heyes J">JA Heyes</name></author><author><name sortKey="Stowell, Km" uniqKey="Stowell K">KM Stowell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Consortium, Pgs" uniqKey="Consortium P">PGS Consortium</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="El Ereamy, A" uniqKey="El Ereamy A">A El‐Kereamy</name></author><author><name sortKey="Chervin, C" uniqKey="Chervin C">C Chervin</name></author><author><name sortKey="Roustan, Jp" uniqKey="Roustan J">JP Roustan</name></author><author><name sortKey="Cheynier, V" uniqKey="Cheynier V">V Cheynier</name></author><author><name sortKey="Souquet, Jm" uniqKey="Souquet J">JM Souquet</name></author><author><name sortKey="Moutounet, M" uniqKey="Moutounet M">M Moutounet</name></author><author><name sortKey="Raynal, J" uniqKey="Raynal J">J Raynal</name></author><author><name sortKey="Ford, C" uniqKey="Ford C">C Ford</name></author><author><name sortKey="Latche, A" uniqKey="Latche A">A Latché</name></author><author><name sortKey="Pech, Jc" uniqKey="Pech J">JC Pech</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gutierrez, Ra" uniqKey="Gutierrez R">RA Gutiérrez</name></author><author><name sortKey="Stokes, Tl" uniqKey="Stokes T">TL Stokes</name></author><author><name sortKey="Thum, K" uniqKey="Thum K">K Thum</name></author><author><name sortKey="Xu, X" uniqKey="Xu X">X Xu</name></author><author><name sortKey="Obertello, M" uniqKey="Obertello M">M Obertello</name></author><author><name sortKey="Katari, Ms" uniqKey="Katari M">MS Katari</name></author><author><name sortKey="Tanurdzic, M" uniqKey="Tanurdzic M">M Tanurdzic</name></author><author><name sortKey="Dean, A" uniqKey="Dean A">A Dean</name></author><author><name sortKey="Nero, Dc" uniqKey="Nero D">DC Nero</name></author><author><name sortKey="Mcclung, Cr" uniqKey="Mcclung C">CR McClung</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="He, F" uniqKey="He F">F He</name></author><author><name sortKey="Mu, L" uniqKey="Mu L">L Mu</name></author><author><name sortKey="Yan, G L" uniqKey="Yan G">G-L Yan</name></author><author><name sortKey="Liang, N N" uniqKey="Liang N">N-N Liang</name></author><author><name sortKey="Pan, Q H" uniqKey="Pan Q">Q-H Pan</name></author><author><name sortKey="Wang, J" uniqKey="Wang J">J Wang</name></author><author><name sortKey="Reeves, Mj" uniqKey="Reeves M">MJ Reeves</name></author><author><name sortKey="Duan, C Q" uniqKey="Duan C">C-Q Duan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="He, J" uniqKey="He J">J He</name></author><author><name sortKey="Giusti, Mm" uniqKey="Giusti M">MM Giusti</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hirai, My" uniqKey="Hirai M">MY Hirai</name></author><author><name sortKey="Sugiyama, K" uniqKey="Sugiyama K">K Sugiyama</name></author><author><name sortKey="Sawada, Y" uniqKey="Sawada Y">Y Sawada</name></author><author><name sortKey="Tohge, T" uniqKey="Tohge T">T Tohge</name></author><author><name sortKey="Obayashi, T" uniqKey="Obayashi T">T Obayashi</name></author><author><name sortKey="Suzuki, A" uniqKey="Suzuki A">A Suzuki</name></author><author><name sortKey="Araki, R" uniqKey="Araki R">R Araki</name></author><author><name sortKey="Sakurai, N" uniqKey="Sakurai N">N Sakurai</name></author><author><name sortKey="Suzuki, H" uniqKey="Suzuki H">H Suzuki</name></author><author><name sortKey="Aoki, K" uniqKey="Aoki K">K Aoki</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hirai, My" uniqKey="Hirai M">MY Hirai</name></author><author><name sortKey="Yano, M" uniqKey="Yano M">M Yano</name></author><author><name sortKey="Goodenowe, Db" uniqKey="Goodenowe D">DB Goodenowe</name></author><author><name sortKey="Kanaya, S" uniqKey="Kanaya S">S Kanaya</name></author><author><name sortKey="Kimura, T" uniqKey="Kimura T">T Kimura</name></author><author><name sortKey="Awazuhara, M" uniqKey="Awazuhara M">M Awazuhara</name></author><author><name sortKey="Arita, M" uniqKey="Arita M">M Arita</name></author><author><name sortKey="Fujiwara, T" uniqKey="Fujiwara T">T Fujiwara</name></author><author><name sortKey="Saito, K" uniqKey="Saito K">K Saito</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hoefgen, R" uniqKey="Hoefgen R">R Hoefgen</name></author><author><name sortKey="Nikiforova, Vj" uniqKey="Nikiforova V">VJ Nikiforova</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Huang, Dw" uniqKey="Huang D">DW Huang</name></author><author><name sortKey="Sherman, Bt" uniqKey="Sherman B">BT Sherman</name></author><author><name sortKey="Lempicki, Ra" uniqKey="Lempicki R">RA Lempicki</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ishiguro, K" uniqKey="Ishiguro K">K Ishiguro</name></author><author><name sortKey="Taniguchi, M" uniqKey="Taniguchi M">M Taniguchi</name></author><author><name sortKey="Tanaka, Y" uniqKey="Tanaka Y">Y Tanaka</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jaakola, L" uniqKey="Jaakola L">L Jaakola</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jeong, S W" uniqKey="Jeong S">S-W Jeong</name></author><author><name sortKey="Das, Pk" uniqKey="Das P">PK Das</name></author><author><name sortKey="Jeoung, Sc" uniqKey="Jeoung S">SC Jeoung</name></author><author><name sortKey="Song, J Y" uniqKey="Song J">J-Y Song</name></author><author><name sortKey="Lee, Hk" uniqKey="Lee H">HK Lee</name></author><author><name sortKey="Kim, Y K" uniqKey="Kim Y">Y-K Kim</name></author><author><name sortKey="Kim, Wj" uniqKey="Kim W">WJ Kim</name></author><author><name sortKey="Park, Yi" uniqKey="Park Y">YI Park</name></author><author><name sortKey="Yoo, S D" uniqKey="Yoo S">S-D Yoo</name></author><author><name sortKey="Choi, S B" uniqKey="Choi S">S-B Choi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Langmead, B" uniqKey="Langmead B">B Langmead</name></author><author><name sortKey="Trapnell, C" uniqKey="Trapnell C">C Trapnell</name></author><author><name sortKey="Pop, M" uniqKey="Pop M">M Pop</name></author><author><name sortKey="Salzberg, Sl" uniqKey="Salzberg S">SL Salzberg</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lazar, G" uniqKey="Lazar G">G Lazar</name></author><author><name sortKey="Goodman, Hm" uniqKey="Goodman H">HM Goodman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lin, L Z" uniqKey="Lin L">L-Z Lin</name></author><author><name sortKey="Sun, J" uniqKey="Sun J">J Sun</name></author><author><name sortKey="Chen, P" uniqKey="Chen P">P Chen</name></author><author><name sortKey="Harnly, Ja" uniqKey="Harnly J">JA Harnly</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Liu, Y" uniqKey="Liu Y">Y Liu</name></author><author><name sortKey="Lin Wang, K" uniqKey="Lin Wang K">K Lin-Wang</name></author><author><name sortKey="Deng, C" uniqKey="Deng C">C Deng</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Liu, Z" uniqKey="Liu Z">Z Liu</name></author><author><name sortKey="Shi, M Z" uniqKey="Shi M">M-Z Shi</name></author><author><name sortKey="Xie, D Y" uniqKey="Xie D">D-Y Xie</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lo Piero, Ar" uniqKey="Lo Piero A">AR Lo Piero</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mounet, F" uniqKey="Mounet F">F Mounet</name></author><author><name sortKey="Moing, A" uniqKey="Moing A">A Moing</name></author><author><name sortKey="Garcia, V" uniqKey="Garcia V">V Garcia</name></author><author><name sortKey="Petit, J" uniqKey="Petit J">J Petit</name></author><author><name sortKey="Maucourt, M" uniqKey="Maucourt M">M Maucourt</name></author><author><name sortKey="Deborde, C" uniqKey="Deborde C">C Deborde</name></author><author><name sortKey="Bernillon, S" uniqKey="Bernillon S">S Bernillon</name></author><author><name sortKey="Le Gall, G" uniqKey="Le Gall G">G Le Gall</name></author><author><name sortKey="Colquhoun, I" uniqKey="Colquhoun I">I Colquhoun</name></author><author><name sortKey="Defernez, M" uniqKey="Defernez M">M Defernez</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Park, Y" uniqKey="Park Y">Y Park</name></author><author><name sortKey="Cho, J" uniqKey="Cho J">J Cho</name></author><author><name sortKey="Cho, H" uniqKey="Cho H">H Cho</name></author><author><name sortKey="Yi, J" uniqKey="Yi J">J Yi</name></author><author><name sortKey="Seo, H" uniqKey="Seo H">H Seo</name></author><author><name sortKey="Choung, M" uniqKey="Choung M">M Choung</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Park, Y" uniqKey="Park Y">Y Park</name></author><author><name sortKey="Cho, J" uniqKey="Cho J">J Cho</name></author><author><name sortKey="Cho, H" uniqKey="Cho H">H Cho</name></author><author><name sortKey="Yi, J" uniqKey="Yi J">J Yi</name></author><author><name sortKey="Seo, H" uniqKey="Seo H">H Seo</name></author><author><name sortKey="Chung, M" uniqKey="Chung M">M Chung</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Patti, Gj" uniqKey="Patti G">GJ Patti</name></author><author><name sortKey="Tautenhahn, R" uniqKey="Tautenhahn R">R Tautenhahn</name></author><author><name sortKey="Siuzdak, G" uniqKey="Siuzdak G">G Siuzdak</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Persson, S" uniqKey="Persson S">S Persson</name></author><author><name sortKey="Wei, H" uniqKey="Wei H">H Wei</name></author><author><name sortKey="Milne, J" uniqKey="Milne J">J Milne</name></author><author><name sortKey="Page, Gp" uniqKey="Page G">GP Page</name></author><author><name sortKey="Somerville, Cr" uniqKey="Somerville C">CR Somerville</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Qi, T" uniqKey="Qi T">T Qi</name></author><author><name sortKey="Song, S" uniqKey="Song S">S Song</name></author><author><name sortKey="Ren, Q" uniqKey="Ren Q">Q Ren</name></author><author><name sortKey="Wu, D" uniqKey="Wu D">D Wu</name></author><author><name sortKey="Huang, H" uniqKey="Huang H">H Huang</name></author><author><name sortKey="Chen, Y" uniqKey="Chen Y">Y Chen</name></author><author><name sortKey="Fan, M" uniqKey="Fan M">M Fan</name></author><author><name sortKey="Peng, W" uniqKey="Peng W">W Peng</name></author><author><name sortKey="Ren, C" uniqKey="Ren C">C Ren</name></author><author><name sortKey="Xie, D" uniqKey="Xie D">D Xie</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Qi, T" uniqKey="Qi T">T Qi</name></author><author><name sortKey="Song, S" uniqKey="Song S">S Song</name></author><author><name sortKey="Xie, D" uniqKey="Xie D">D Xie</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Saito, K" uniqKey="Saito K">K Saito</name></author><author><name sortKey="Hirai, My" uniqKey="Hirai M">MY Hirai</name></author><author><name sortKey="Yonekura Sakakibara, K" uniqKey="Yonekura Sakakibara K">K Yonekura-Sakakibara</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schaart, Jg" uniqKey="Schaart J">JG Schaart</name></author><author><name sortKey="Dubos, C" uniqKey="Dubos C">C Dubos</name></author><author><name sortKey="Romero De La Fuente, I" uniqKey="Romero De La Fuente I">I Romero De La Fuente</name></author><author><name sortKey="Houwelingen, Am" uniqKey="Houwelingen A">AM Houwelingen</name></author><author><name sortKey="Vos, Rc" uniqKey="Vos R">RC Vos</name></author><author><name sortKey="Jonker, Hh" uniqKey="Jonker H">HH Jonker</name></author><author><name sortKey="Xu, W" uniqKey="Xu W">W Xu</name></author><author><name sortKey="Routaboul, Jm" uniqKey="Routaboul J">JM Routaboul</name></author><author><name sortKey="Lepiniec, L" uniqKey="Lepiniec L">L Lepiniec</name></author><author><name sortKey="Bovy, Ag" uniqKey="Bovy A">AG Bovy</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stushnoff, C" uniqKey="Stushnoff C">C Stushnoff</name></author><author><name sortKey="Ducreux, Lj" uniqKey="Ducreux L">LJ Ducreux</name></author><author><name sortKey="Hancock, Rd" uniqKey="Hancock R">RD Hancock</name></author><author><name sortKey="Hedley, Pe" uniqKey="Hedley P">PE Hedley</name></author><author><name sortKey="Holm, Dg" uniqKey="Holm D">DG Holm</name></author><author><name sortKey="Mcdougall, Gj" uniqKey="Mcdougall G">GJ McDougall</name></author><author><name sortKey="Mcnicol, Jw" uniqKey="Mcnicol J">JW McNicol</name></author><author><name sortKey="Morris, J" uniqKey="Morris J">J Morris</name></author><author><name sortKey="Morris, Wl" uniqKey="Morris W">WL Morris</name></author><author><name sortKey="Sungurtas, Ja" uniqKey="Sungurtas J">JA Sungurtas</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sun, J" uniqKey="Sun J">J Sun</name></author><author><name sortKey="Lin, Lz" uniqKey="Lin L">LZ Lin</name></author><author><name sortKey="Chen, P" uniqKey="Chen P">P Chen</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Truong, V D" uniqKey="Truong V">V-D Truong</name></author><author><name sortKey="Deighton, N" uniqKey="Deighton N">N Deighton</name></author><author><name sortKey="Thompson, Rt" uniqKey="Thompson R">RT Thompson</name></author><author><name sortKey="Mcfeeters, Rf" uniqKey="Mcfeeters R">RF McFeeters</name></author><author><name sortKey="Dean, Lo" uniqKey="Dean L">LO Dean</name></author><author><name sortKey="Pecota, Kv" uniqKey="Pecota K">KV Pecota</name></author><author><name sortKey="Yencho, Gc" uniqKey="Yencho G">GC Yencho</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Urbanczyk Ochniak, E" uniqKey="Urbanczyk Ochniak E">E Urbanczyk‐Wochniak</name></author><author><name sortKey="Luedemann, A" uniqKey="Luedemann A">A Luedemann</name></author><author><name sortKey="Kopka, J" uniqKey="Kopka J">J Kopka</name></author><author><name sortKey="Selbig, J" uniqKey="Selbig J">J Selbig</name></author><author><name sortKey="Roessner Unali, U" uniqKey="Roessner Unali U">U Roessner‐Tunali</name></author><author><name sortKey="Willmitzer, L" uniqKey="Willmitzer L">L Willmitzer</name></author><author><name sortKey="Fernie, Ar" uniqKey="Fernie A">AR Fernie</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wang, D" uniqKey="Wang D">D Wang</name></author><author><name sortKey="Amornsiripanitch, N" uniqKey="Amornsiripanitch N">N Amornsiripanitch</name></author><author><name sortKey="Dong, X" uniqKey="Dong X">X Dong</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Woldemariam, Mg" uniqKey="Woldemariam M">MG Woldemariam</name></author><author><name sortKey="Onkokesung, N" uniqKey="Onkokesung N">N Onkokesung</name></author><author><name sortKey="Baldwin, It" uniqKey="Baldwin I">IT Baldwin</name></author><author><name sortKey="Galis, I" uniqKey="Galis I">I Galis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Woo, Hr" uniqKey="Woo H">HR Woo</name></author><author><name sortKey="Kim, Hj" uniqKey="Kim H">HJ Kim</name></author><author><name sortKey="Nam, Hg" uniqKey="Nam H">HG Nam</name></author><author><name sortKey="Lim, Po" uniqKey="Lim P">PO Lim</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wu, X" uniqKey="Wu X">X Wu</name></author><author><name sortKey="Prior, Rl" uniqKey="Prior R">RL Prior</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Xu, W" uniqKey="Xu W">W Xu</name></author><author><name sortKey="Grain, D" uniqKey="Grain D">D Grain</name></author><author><name sortKey="Gourrierec, J" uniqKey="Gourrierec J">J Gourrierec</name></author><author><name sortKey="Harscoet, E" uniqKey="Harscoet E">E Harscoët</name></author><author><name sortKey="Berger, A" uniqKey="Berger A">A Berger</name></author><author><name sortKey="Jauvion, V" uniqKey="Jauvion V">V Jauvion</name></author><author><name sortKey="Scagnelli, A" uniqKey="Scagnelli A">A Scagnelli</name></author><author><name sortKey="Berger, N" uniqKey="Berger N">N Berger</name></author><author><name sortKey="Bidzinski, P" uniqKey="Bidzinski P">P Bidzinski</name></author><author><name sortKey="Kelemen, Z" uniqKey="Kelemen Z">Z Kelemen</name></author></analytic></biblStruct></listBibl></div1></back></TEI><pmc article-type="research-article"><pmc-dir>properties 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<front><journal-meta><journal-id journal-id-type="nlm-ta">J Exp Bot</journal-id><journal-id journal-id-type="iso-abbrev">J. Exp. Bot</journal-id><journal-id journal-id-type="hwp">jexbot</journal-id><journal-id journal-id-type="publisher-id">exbotj</journal-id><journal-title-group><journal-title>Journal of Experimental Botany</journal-title></journal-title-group><issn pub-type="ppub">0022-0957</issn><issn pub-type="epub">1460-2431</issn><publisher><publisher-name>Oxford University Press</publisher-name><publisher-loc>UK</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">26733692</article-id><article-id pub-id-type="pmc">4762390</article-id><article-id pub-id-type="doi">10.1093/jxb/erv549</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Paper</subject></subj-group></article-categories><title-group><article-title>Network analysis of the metabolome and transcriptome reveals novel regulation of potato pigmentation</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Cho</surname><given-names>Kyoungwon</given-names></name><xref ref-type="aff" rid="AF0001"><sup>1</sup></xref><xref ref-type="corresp" rid="c2"><sup>†</sup></xref></contrib><contrib contrib-type="author"><name><surname>Cho</surname><given-names>Kwang-Soo</given-names></name><xref ref-type="aff" rid="AF0002"><sup>2</sup></xref><xref ref-type="corresp" rid="c1">*</xref></contrib><contrib contrib-type="author"><name><surname>Sohn</surname><given-names>Hwang-Bae</given-names></name><xref ref-type="aff" rid="AF0002"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Ha</surname><given-names>In Jin</given-names></name><xref ref-type="aff" rid="AF0003"><sup>3</sup></xref><xref ref-type="corresp" rid="c3"><sup>‡</sup></xref></contrib><contrib contrib-type="author"><name><surname>Hong</surname><given-names>Su-Young</given-names></name><xref ref-type="aff" rid="AF0002"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Lee</surname><given-names>Hyerim</given-names></name><xref ref-type="aff" rid="AF0001"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Kim</surname><given-names>Young-Mi</given-names></name><xref ref-type="aff" rid="AF0004"><sup>4</sup></xref></contrib><contrib contrib-type="author"><name><surname>Nam</surname><given-names>Myung Hee</given-names></name><xref ref-type="aff" rid="AF0001"><sup>1</sup></xref><xref ref-type="corresp" rid="c1">*</xref></contrib><aff id="AF0001"><sup>1</sup><institution>Environmental Risk and Welfare Research Team, Korea Basic Science Institute (KBSI)</institution>,<addr-line>Seoul 02855</addr-line>,<country>Republic of Korea</country></aff><aff id="AF0002"><sup>2</sup><institution>Highland Agriculture Research Institute, National Institute of Crop Science, Rural Development Administration</institution>,<addr-line>Pyeongchang 25342</addr-line>,<country>Republic of Korea</country></aff><aff id="AF0003"><sup>3</sup><institution>Omics System Research Team, Korea Basic Science Institute (KBSI)</institution>,<addr-line>Seoul 03759</addr-line>,<country>Republic of Korea</country></aff><aff id="AF0004"><sup>4</sup><institution>Department of Agricultural Biotechnology, National Academy of Agricultural Science, Rural Development Administration (RDA)</institution>,<addr-line>Jeongju 54874</addr-line>,<country>Republic of Korea</country></aff></contrib-group><author-notes><corresp id="c1">* Corresponding author: E-mail, <email>nammh@kbsi.re.kr</email> or <email>kscholove@korea.kr</email></corresp><corresp id="c2"><sup>†</sup> Present address: Department of Agricultural Biotechnology, National Academy of Agricultural Science, Rural Development Administration (RDA), Jeongju 54874, Republic of Korea.</corresp><corresp id="c3"><sup>‡</sup> Present address: Korean Medicine Clinical Trial Center (K-CTC), Kyung Hee University Korean Medicine Hospital, Seoul 02447, Republic of Korea</corresp><fn id="fn-100"><p>Editor: Qiao Zhao, Tsinghua University</p></fn></author-notes><pub-date pub-type="ppub"><month>3</month><year>2016</year></pub-date><pub-date pub-type="epub"><day>4</day><month>1</month><year>2016</year></pub-date><pub-date pub-type="pmc-release"><day>4</day><month>1</month><year>2016</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on the
<volume>67</volume><issue>5</issue><fpage>1519</fpage><lpage>1533</lpage><permissions><copyright-statement>© The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.</copyright-statement><copyright-year>2016</copyright-year><license license-type="creative-commons" xlink:href="http://creativecommons.org/licenses/by/3.0"><license-p>This is an Open Access article distributed under the terms of the Creative Commons Attribution License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link>), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p></license></permissions><abstract abstract-type="precis"><title>Highlight</title><p>An integrated approach of metabolomics and transcriptomics was applied to understand regulatory networks associated with biosynthesis of anthocyanins that are differentially regulated in light-red- and dark-purple-colored potato cultivars.</p></abstract><abstract><p>To gain insights into the regulatory networks related to anthocyanin biosynthesis and identify key regulatory genes, we performed an integrated analysis of the transcriptome and metabolome in sprouts germinated from three colored potato cultivars: light-red Hongyoung, dark-purple Jayoung, and white Atlantic. We investigated transcriptional and metabolic changes using statistical analyses and gene–metabolite correlation networks. Transcript and metabolite profiles were generated through high-throughput RNA-sequencing data analysis and ultraperformance liquid chromatography quadrupole time-of-flight tandem mass spectrometry, respectively. The identification and quantification of changes in anthocyanin were performed using molecular formula-based mass accuracy and specific features of their MS<sup>2</sup> spectra. Correlation tests of anthocyanin contents and transcriptional changes showed 823 strong correlations (correlation coefficient, <italic>R</italic><sup>2</sup>>0.9) between 22 compounds and 119 transcripts categorized into flavonoid metabolism, hormones, transcriptional regulation, and signaling. The connection network of anthocyanins and genes showed a regulatory system involved in the pigmentation of light-red Hongyoung and dark-purple Jayoung potatoes, suggesting that this systemic approach is powerful for investigations into novel genes that are potential targets for the breeding of new valuable potato cultivars.</p></abstract><kwd-group><title>Key words:</title><kwd>Anthocayanin</kwd><kwd>metabolomics</kwd><kwd>colored potato</kwd><kwd>RNA-seq</kwd><kwd>ultrapressure liquid chromatography quadrupole time-of-flight mass spectrometry (UPLC-Q-TOF-MS).</kwd></kwd-group><counts><page-count count="15"></page-count></counts></article-meta></front></pmc><affiliations><list><country><li>Corée du Sud</li></country></list><tree><country name="Corée du Sud"><noRegion><name sortKey="Cho, Kyoungwon" sort="Cho, Kyoungwon" uniqKey="Cho K" first="Kyoungwon" last="Cho">Kyoungwon Cho</name></noRegion><name sortKey="Cho, Kwang Soo" sort="Cho, Kwang Soo" uniqKey="Cho K" first="Kwang-Soo" last="Cho">Kwang-Soo Cho</name><name sortKey="Ha, In Jin" sort="Ha, In Jin" uniqKey="Ha I" first="In Jin" last="Ha">In Jin Ha</name><name sortKey="Hong, Su Young" sort="Hong, Su Young" uniqKey="Hong S" first="Su-Young" last="Hong">Su-Young Hong</name><name sortKey="Kim, Young Mi" sort="Kim, Young Mi" uniqKey="Kim Y" first="Young-Mi" last="Kim">Young-Mi Kim</name><name sortKey="Lee, Hyerim" sort="Lee, Hyerim" uniqKey="Lee H" first="Hyerim" last="Lee">Hyerim Lee</name><name sortKey="Nam, Myung Hee" sort="Nam, Myung Hee" uniqKey="Nam M" first="Myung Hee" last="Nam">Myung Hee Nam</name><name sortKey="Sohn, Hwang Bae" sort="Sohn, Hwang Bae" uniqKey="Sohn H" first="Hwang-Bae" last="Sohn">Hwang-Bae Sohn</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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