OrangerV1, PascalFrancis, Curation, bibRecord, 000605

Differentiation of citrus bacterial canker strains in Korea by host range, rep-PCR fingerprinting and 16S rDNA analysis

Identifieur interne : 000605 ( PascalFrancis/Curation ); précédent : 000604; suivant : 000606

Differentiation of citrus bacterial canker strains in Korea by host range, rep-PCR fingerprinting and 16S rDNA analysis

Auteurs : Yong Hoon Lee [Corée du Sud] ; Seungdon Lee [Corée du Sud] ; DONG HEE LEE [Corée du Sud] ; SANG HYE JI [Corée du Sud] ; HYUN YOUNG CHANG [Corée du Sud] ; Sunggi Heu [Corée du Sud] ; JAE WOOK HYUN [Corée du Sud] ; Dong-Soo Ra [Corée du Sud] ; EUN WOO PARK [Corée du Sud]

Source :

European journal of plant pathology [ 0929-1873 ] ; 2008.

RBID : Pascal:08-0225382

Descripteurs français

Pascal (Inist)
- Citrus sinensis, Bactérie, Xanthomonas axonopodis, Souche, Corée, Spectre hôte, Réaction chaîne polymérase, Méthode fingerprint, DNA ribosomique, Isolat, Pouvoir pathogène, Pathotype, Microbiologie, Phytopathologie, Phytopathogène, Plante, Citrus paradisi Poncirus trifoliata.

English descriptors

KwdEn :
- Bacteria, Citrus sinensis, Fingerprint method, Host range, Isolate, Korea, Microbiology, Pathogenicity, Pathotype, Plant, Plant pathogen, Plant pathology, Polymerase chain reaction, Ribosomal DNA, Strain, Xanthomonas axonopodis.

Abstract

New Xanthomonas isolates causing citrus bacterial canker in Korea were differentiated primarily on the basis of host range by comparison with reference strains. The new isolates were pathogenic to Citrus sinensis, C. paradisi, C. limon and C. unshiu and formed crater-like canker on the plants; this indicated that they were X axonopodis (X.a.) pv. citri A types. Molecular characterization using rep-PCR fingerprinting and 16S rDNA sequence analysis was also performed. Cluster analysis by combining the band patterns of ERIC-, BOX- and REP-PCR clearly separated one group including only X. a. pv. citrumelo and the other group including X. a. pv. citri and X. a. pv. aurantifolii strains. There was a clear separation between X. a. pv. citri Asiatic types and X. a. pv. aurantifolii B, C types in the second group. Partial sequence analysis of 16S rDNA revealed that all strains of X. a. pv. aurantifolii B and C type, and X. a. pv. citrumelo formed a distinct cluster with a similarity of 99%. Our results indicate that the isolates causing citrus canker in Korea belong to the A type of X. a. pv. citri.

A01	`01`	`1`		`@0 0929-1873`
A03		`1`		`@0 Eur. j. plant pathol.`
A05				`@2 121`
A06				`@2 1`
A08	`01`	`1`	`ENG`	`@1 Differentiation of citrus bacterial canker strains in Korea by host range, rep-PCR fingerprinting and 16S rDNA analysis`
A11	`01`	`1`		`@1 LEE (Yong Hoon)`
A11	`02`	`1`		`@1 LEE (Seungdon)`
A11	`03`	`1`		`@1 DONG HEE LEE`
A11	`04`	`1`		`@1 SANG HYE JI`
A11	`05`	`1`		`@1 HYUN YOUNG CHANG`
A11	`06`	`1`		`@1 HEU (Sunggi)`
A11	`07`	`1`		`@1 JAE WOOK HYUN`
A11	`08`	`1`		`@1 RA (Dong-Soo)`
A11	`09`	`1`		`@1 EUN WOO PARK`
A14	`01`			`@1 Division of Plant Pathology, National Institute of Agricultural Science and Technology, RDA @2 Suwon 441-707 @3 KOR @Z 1 aut. @Z 2 aut. @Z 3 aut. @Z 4 aut. @Z 5 aut. @Z 6 aut. @Z 8 aut.`
A14	`02`			`@1 National Institute of Subtropical Agriculture @2 Jeju 690-150 @3 KOR @Z 7 aut.`
A14	`03`			`@1 Dept. of Applied Biology and Chemistry, Seoul National University @2 Seoul 151-921 @3 KOR @Z 9 aut.`
A20				`@1 97-102`
A21				`@1 2008`
A23	`01`			`@0 ENG`
A43	`01`			`@1 INIST @2 890 @5 354000183003930100`
A44				`@0 0000 @1 © 2008 INIST-CNRS. All rights reserved.`
A45				`@0 1/2 p.`
A47	`01`	`1`		`@0 08-0225382`
A60				`@1 P`
A61				`@0 A`
A64	`01`	`1`		`@0 European journal of plant pathology`
A66	`01`			`@0 NLD`
C01	`01`		`ENG`	@0 New Xanthomonas isolates causing citrus bacterial canker in Korea were differentiated primarily on the basis of host range by comparison with reference strains. The new isolates were pathogenic to Citrus sinensis, C. paradisi, C. limon and C. unshiu and formed crater-like canker on the plants; this indicated that they were X axonopodis (X.a.) pv. citri A types. Molecular characterization using rep-PCR fingerprinting and 16S rDNA sequence analysis was also performed. Cluster analysis by combining the band patterns of ERIC-, BOX- and REP-PCR clearly separated one group including only X. a. pv. citrumelo and the other group including X. a. pv. citri and X. a. pv. aurantifolii strains. There was a clear separation between X. a. pv. citri Asiatic types and X. a. pv. aurantifolii B, C types in the second group. Partial sequence analysis of 16S rDNA revealed that all strains of X. a. pv. aurantifolii B and C type, and X. a. pv. citrumelo formed a distinct cluster with a similarity of 99%. Our results indicate that the isolates causing citrus canker in Korea belong to the A type of X. a. pv. citri.
C02	`01`	`X`		`@0 002A34F`
C03	`01`	`X`	`FRE`	`@0 Citrus sinensis @2 NS @5 01`
C03	`01`	`X`	`ENG`	`@0 Citrus sinensis @2 NS @5 01`
C03	`01`	`X`	`SPA`	`@0 Citrus sinensis @2 NS @5 01`
C03	`02`	`X`	`FRE`	`@0 Bactérie @5 02`
C03	`02`	`X`	`ENG`	`@0 Bacteria @5 02`
C03	`02`	`X`	`SPA`	`@0 Bacteria @5 02`
C03	`03`	`X`	`FRE`	`@0 Xanthomonas axonopodis @2 NS @5 03`
C03	`03`	`X`	`ENG`	`@0 Xanthomonas axonopodis @2 NS @5 03`
C03	`03`	`X`	`SPA`	`@0 Xanthomonas axonopodis @2 NS @5 03`
C03	`04`	`X`	`FRE`	`@0 Souche @5 05`
C03	`04`	`X`	`ENG`	`@0 Strain @5 05`
C03	`04`	`X`	`SPA`	`@0 Cepa @5 05`
C03	`05`	`X`	`FRE`	`@0 Corée @2 NG @5 06`
C03	`05`	`X`	`ENG`	`@0 Korea @2 NG @5 06`
C03	`05`	`X`	`SPA`	`@0 Corea @2 NG @5 06`
C03	`06`	`X`	`FRE`	`@0 Spectre hôte @5 07`
C03	`06`	`X`	`ENG`	`@0 Host range @5 07`
C03	`06`	`X`	`SPA`	`@0 Espectro huesped @5 07`
C03	`07`	`X`	`FRE`	`@0 Réaction chaîne polymérase @5 08`
C03	`07`	`X`	`ENG`	`@0 Polymerase chain reaction @5 08`
C03	`07`	`X`	`SPA`	`@0 Reacción cadena polimerasa @5 08`
C03	`08`	`X`	`FRE`	`@0 Méthode fingerprint @5 09`
C03	`08`	`X`	`ENG`	`@0 Fingerprint method @5 09`
C03	`08`	`X`	`SPA`	`@0 Método fingerprint @5 09`
C03	`09`	`X`	`FRE`	`@0 DNA ribosomique @5 10`
C03	`09`	`X`	`ENG`	`@0 Ribosomal DNA @5 10`
C03	`09`	`X`	`SPA`	`@0 DNA ribosómico @5 10`
C03	`10`	`X`	`FRE`	`@0 Isolat @5 11`
C03	`10`	`X`	`ENG`	`@0 Isolate @5 11`
C03	`10`	`X`	`SPA`	`@0 Aislado @5 11`
C03	`11`	`X`	`FRE`	`@0 Pouvoir pathogène @5 12`
C03	`11`	`X`	`ENG`	`@0 Pathogenicity @5 12`
C03	`11`	`X`	`SPA`	`@0 Poder patógeno @5 12`
C03	`12`	`X`	`FRE`	`@0 Pathotype @5 67`
C03	`12`	`X`	`ENG`	`@0 Pathotype @5 67`
C03	`12`	`X`	`SPA`	`@0 Patotipo @5 67`
C03	`13`	`X`	`FRE`	`@0 Microbiologie @5 68`
C03	`13`	`X`	`ENG`	`@0 Microbiology @5 68`
C03	`13`	`X`	`SPA`	`@0 Microbiología @5 68`
C03	`14`	`X`	`FRE`	`@0 Phytopathologie @5 69`
C03	`14`	`X`	`ENG`	`@0 Plant pathology @5 69`
C03	`14`	`X`	`SPA`	`@0 Fitopatología @5 69`
C03	`15`	`X`	`FRE`	`@0 Phytopathogène @5 70`
C03	`15`	`X`	`ENG`	`@0 Plant pathogen @5 70`
C03	`15`	`X`	`SPA`	`@0 Fitopatógeno @5 70`
C03	`16`	`X`	`FRE`	`@0 Plante @5 71`
C03	`16`	`X`	`ENG`	`@0 Plant @5 71`
C03	`16`	`X`	`SPA`	`@0 Planta @5 71`
C03	`17`	`X`	`FRE`	`@0 Citrus paradisi Poncirus trifoliata @4 INC @5 79`
C07	`01`	`X`	`FRE`	`@0 Rutaceae @2 NS`
C07	`01`	`X`	`ENG`	`@0 Rutaceae @2 NS`
C07	`01`	`X`	`SPA`	`@0 Rutaceae @2 NS`
C07	`02`	`X`	`FRE`	`@0 Dicotyledones @2 NS`
C07	`02`	`X`	`ENG`	`@0 Dicotyledones @2 NS`
C07	`02`	`X`	`SPA`	`@0 Dicotyledones @2 NS`
C07	`03`	`X`	`FRE`	`@0 Angiospermae @2 NS`
C07	`03`	`X`	`ENG`	`@0 Angiospermae @2 NS`
C07	`03`	`X`	`SPA`	`@0 Angiospermae @2 NS`
C07	`04`	`X`	`FRE`	`@0 Spermatophyta @2 NS`
C07	`04`	`X`	`ENG`	`@0 Spermatophyta @2 NS`
C07	`04`	`X`	`SPA`	`@0 Spermatophyta @2 NS`
C07	`05`	`X`	`FRE`	`@0 Pseudomonadaceae @2 NS`
C07	`05`	`X`	`ENG`	`@0 Pseudomonadaceae @2 NS`
C07	`05`	`X`	`SPA`	`@0 Pseudomonadaceae @2 NS`
C07	`06`	`X`	`FRE`	`@0 Pseudomonadales @2 NS`
C07	`06`	`X`	`ENG`	`@0 Pseudomonadales @2 NS`
C07	`06`	`X`	`SPA`	`@0 Pseudomonadales @2 NS`
C07	`07`	`X`	`FRE`	`@0 Asie @2 NG`
C07	`07`	`X`	`ENG`	`@0 Asia @2 NG`
C07	`07`	`X`	`SPA`	`@0 Asia @2 NG`
C07	`08`	`X`	`FRE`	`@0 Agrume @5 13`
C07	`08`	`X`	`ENG`	`@0 Citrus fruit @5 13`
C07	`08`	`X`	`SPA`	`@0 Agrios @5 13`
C07	`09`	`X`	`FRE`	`@0 Porte greffe @5 16`
C07	`09`	`X`	`ENG`	`@0 Rootstock @5 16`
C07	`09`	`X`	`SPA`	`@0 Portainjerto @5 16`
N21				`@1 147`
N44	`01`			`@1 OTO`
N82				`@1 OTO`

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Le document en format XML

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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a">Differentiation of citrus bacterial canker strains in Korea by host range, rep-PCR fingerprinting and 16S rDNA analysis</title>
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<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Division of Plant Pathology, National Institute of Agricultural Science and Technology, RDA</s1>
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<author><name sortKey="Dong Hee Lee" sort="Dong Hee Lee" uniqKey="Dong Hee Lee" last="Dong Hee Lee">DONG HEE LEE</name>
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<s2>Suwon 441-707</s2>
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<author><name sortKey="Sang Hye Ji" sort="Sang Hye Ji" uniqKey="Sang Hye Ji" last="Sang Hye Ji">SANG HYE JI</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Division of Plant Pathology, National Institute of Agricultural Science and Technology, RDA</s1>
<s2>Suwon 441-707</s2>
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<author><name sortKey="Hyun Young Chang" sort="Hyun Young Chang" uniqKey="Hyun Young Chang" last="Hyun Young Chang">HYUN YOUNG CHANG</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Division of Plant Pathology, National Institute of Agricultural Science and Technology, RDA</s1>
<s2>Suwon 441-707</s2>
<s3>KOR</s3>
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</affiliation>
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<author><name sortKey="Heu, Sunggi" sort="Heu, Sunggi" uniqKey="Heu S" first="Sunggi" last="Heu">Sunggi Heu</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Division of Plant Pathology, National Institute of Agricultural Science and Technology, RDA</s1>
<s2>Suwon 441-707</s2>
<s3>KOR</s3>
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<author><name sortKey="Jae Wook Hyun" sort="Jae Wook Hyun" uniqKey="Jae Wook Hyun" last="Jae Wook Hyun">JAE WOOK HYUN</name>
<affiliation wicri:level="1"><inist:fA14 i1="02"><s1>National Institute of Subtropical Agriculture</s1>
<s2>Jeju 690-150</s2>
<s3>KOR</s3>
<sZ>7 aut.</sZ>
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<country>Corée du Sud</country>
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</author>
<author><name sortKey="Ra, Dong Soo" sort="Ra, Dong Soo" uniqKey="Ra D" first="Dong-Soo" last="Ra">Dong-Soo Ra</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Division of Plant Pathology, National Institute of Agricultural Science and Technology, RDA</s1>
<s2>Suwon 441-707</s2>
<s3>KOR</s3>
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<sZ>8 aut.</sZ>
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<country>Corée du Sud</country>
</affiliation>
</author>
<author><name sortKey="Eun Woo Park" sort="Eun Woo Park" uniqKey="Eun Woo Park" last="Eun Woo Park">EUN WOO PARK</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Dept. of Applied Biology and Chemistry, Seoul National University</s1>
<s2>Seoul 151-921</s2>
<s3>KOR</s3>
<sZ>9 aut.</sZ>
</inist:fA14>
<country>Corée du Sud</country>
</affiliation>
</author>
</analytic>
<series><title level="j" type="main">European journal of plant pathology</title>
<title level="j" type="abbreviated">Eur. j. plant pathol.</title>
<idno type="ISSN">0929-1873</idno>
<imprint><date when="2008">2008</date>
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<seriesStmt><title level="j" type="main">European journal of plant pathology</title>
<title level="j" type="abbreviated">Eur. j. plant pathol.</title>
<idno type="ISSN">0929-1873</idno>
</seriesStmt>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacteria</term>
<term>Citrus sinensis</term>
<term>Fingerprint method</term>
<term>Host range</term>
<term>Isolate</term>
<term>Korea</term>
<term>Microbiology</term>
<term>Pathogenicity</term>
<term>Pathotype</term>
<term>Plant</term>
<term>Plant pathogen</term>
<term>Plant pathology</term>
<term>Polymerase chain reaction</term>
<term>Ribosomal DNA</term>
<term>Strain</term>
<term>Xanthomonas axonopodis</term>
</keywords>
<keywords scheme="Pascal" xml:lang="fr"><term>Citrus sinensis</term>
<term>Bactérie</term>
<term>Xanthomonas axonopodis</term>
<term>Souche</term>
<term>Corée</term>
<term>Spectre hôte</term>
<term>Réaction chaîne polymérase</term>
<term>Méthode fingerprint</term>
<term>DNA ribosomique</term>
<term>Isolat</term>
<term>Pouvoir pathogène</term>
<term>Pathotype</term>
<term>Microbiologie</term>
<term>Phytopathologie</term>
<term>Phytopathogène</term>
<term>Plante</term>
<term>Citrus paradisi  Poncirus trifoliata</term>
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<front><div type="abstract" xml:lang="en">New Xanthomonas isolates causing citrus bacterial canker in Korea were differentiated primarily on the basis of host range by comparison with reference strains. The new isolates were pathogenic to Citrus sinensis, C. paradisi, C. limon and C. unshiu and formed crater-like canker on the plants; this indicated that they were X axonopodis (X.a.) pv. citri A types. Molecular characterization using rep-PCR fingerprinting and 16S rDNA sequence analysis was also performed. Cluster analysis by combining the band patterns of ERIC-, BOX- and REP-PCR clearly separated one group including only X. a. pv. citrumelo and the other group including X. a. pv. citri and X. a. pv. aurantifolii strains. There was a clear separation between X. a. pv. citri Asiatic types and X. a. pv. aurantifolii B, C types in the second group. Partial sequence analysis of 16S rDNA revealed that all strains of X. a. pv. aurantifolii B and C type, and X. a. pv. citrumelo formed a distinct cluster with a similarity of 99%. Our results indicate that the isolates causing citrus canker in Korea belong to the A type of X. a. pv. citri.</div>
</front>
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<fA08 i1="01" i2="1" l="ENG"><s1>Differentiation of citrus bacterial canker strains in Korea by host range, rep-PCR fingerprinting and 16S rDNA analysis</s1>
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<fA11 i1="01" i2="1"><s1>LEE (Yong Hoon)</s1>
</fA11>
<fA11 i1="02" i2="1"><s1>LEE (Seungdon)</s1>
</fA11>
<fA11 i1="03" i2="1"><s1>DONG HEE LEE</s1>
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<fA11 i1="04" i2="1"><s1>SANG HYE JI</s1>
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<fA11 i1="05" i2="1"><s1>HYUN YOUNG CHANG</s1>
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<fA11 i1="06" i2="1"><s1>HEU (Sunggi)</s1>
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<fA11 i1="07" i2="1"><s1>JAE WOOK HYUN</s1>
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<fA11 i1="08" i2="1"><s1>RA (Dong-Soo)</s1>
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<fA11 i1="09" i2="1"><s1>EUN WOO PARK</s1>
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<fA14 i1="01"><s1>Division of Plant Pathology, National Institute of Agricultural Science and Technology, RDA</s1>
<s2>Suwon 441-707</s2>
<s3>KOR</s3>
<sZ>1 aut.</sZ>
<sZ>2 aut.</sZ>
<sZ>3 aut.</sZ>
<sZ>4 aut.</sZ>
<sZ>5 aut.</sZ>
<sZ>6 aut.</sZ>
<sZ>8 aut.</sZ>
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<fA14 i1="02"><s1>National Institute of Subtropical Agriculture</s1>
<s2>Jeju 690-150</s2>
<s3>KOR</s3>
<sZ>7 aut.</sZ>
</fA14>
<fA14 i1="03"><s1>Dept. of Applied Biology and Chemistry, Seoul National University</s1>
<s2>Seoul 151-921</s2>
<s3>KOR</s3>
<sZ>9 aut.</sZ>
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<fC01 i1="01" l="ENG"><s0>New Xanthomonas isolates causing citrus bacterial canker in Korea were differentiated primarily on the basis of host range by comparison with reference strains. The new isolates were pathogenic to Citrus sinensis, C. paradisi, C. limon and C. unshiu and formed crater-like canker on the plants; this indicated that they were X axonopodis (X.a.) pv. citri A types. Molecular characterization using rep-PCR fingerprinting and 16S rDNA sequence analysis was also performed. Cluster analysis by combining the band patterns of ERIC-, BOX- and REP-PCR clearly separated one group including only X. a. pv. citrumelo and the other group including X. a. pv. citri and X. a. pv. aurantifolii strains. There was a clear separation between X. a. pv. citri Asiatic types and X. a. pv. aurantifolii B, C types in the second group. Partial sequence analysis of 16S rDNA revealed that all strains of X. a. pv. aurantifolii B and C type, and X. a. pv. citrumelo formed a distinct cluster with a similarity of 99%. Our results indicate that the isolates causing citrus canker in Korea belong to the A type of X. a. pv. citri.</s0>
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<fC02 i1="01" i2="X"><s0>002A34F</s0>
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<fC03 i1="01" i2="X" l="FRE"><s0>Citrus sinensis</s0>
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<fC03 i1="01" i2="X" l="ENG"><s0>Citrus sinensis</s0>
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<fC03 i1="02" i2="X" l="SPA"><s0>Bacteria</s0>
<s5>02</s5>
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<fC03 i1="03" i2="X" l="FRE"><s0>Xanthomonas axonopodis</s0>
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<fC03 i1="03" i2="X" l="ENG"><s0>Xanthomonas axonopodis</s0>
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<s5>03</s5>
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<fC03 i1="04" i2="X" l="FRE"><s0>Souche</s0>
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<s5>05</s5>
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<s5>05</s5>
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<fC03 i1="05" i2="X" l="FRE"><s0>Corée</s0>
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<fC03 i1="05" i2="X" l="ENG"><s0>Korea</s0>
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<fC07 i1="06" i2="X" l="SPA"><s0>Pseudomonadales</s0>
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<s5>13</s5>
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<s5>16</s5>
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Differentiation of citrus bacterial canker strains in Korea by host range, rep-PCR fingerprinting and 16S rDNA analysis

Differentiation of citrus bacterial canker strains in Korea by host range, rep-PCR fingerprinting and 16S rDNA analysis

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