Comparative proteomics reveals that central metabolism changes are associated with resistance against Sporisorium scitamineum in sugarcane
Identifieur interne : 002201 ( Ncbi/Merge ); précédent : 002200; suivant : 002202Comparative proteomics reveals that central metabolism changes are associated with resistance against Sporisorium scitamineum in sugarcane
Auteurs : Yachun Su [République populaire de Chine] ; Liping Xu [République populaire de Chine] ; Zhuqing Wang [République populaire de Chine] ; Qiong Peng [République populaire de Chine] ; Yuting Yang [République populaire de Chine] ; Yun Chen [République populaire de Chine] ; Youxiong Que [République populaire de Chine]Source :
- BMC Genomics [ 1471-2164 ] ; 2016.
Abstract
Sugarcane smut, which is caused by
We identified 273 and 341 differentially expressed proteins in sugarcane smut-resistant (Yacheng05-179) and susceptible (ROC22) genotypes at 48 h after inoculation with
These results indicated complex resistance-related events in sugarcane-
The online version of this article (doi:10.1186/s12864-016-3146-8) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1186/s12864-016-3146-8
PubMed: 27733120
PubMed Central: 5062822
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Comparative proteomics reveals that central metabolism changes are associated with resistance against <italic>Sporisorium scitamineum</italic>
in sugarcane</title>
<author><name sortKey="Su, Yachun" sort="Su, Yachun" uniqKey="Su Y" first="Yachun" last="Su">Yachun Su</name>
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<author><name sortKey="Xu, Liping" sort="Xu, Liping" uniqKey="Xu L" first="Liping" last="Xu">Liping Xu</name>
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<author><name sortKey="Chen, Yun" sort="Chen, Yun" uniqKey="Chen Y" first="Yun" last="Chen">Yun Chen</name>
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<series><title level="j">BMC Genomics</title>
<idno type="eISSN">1471-2164</idno>
<imprint><date when="2016">2016</date>
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<front><div type="abstract" xml:lang="en"><sec><title>Background</title>
<p>Sugarcane smut, which is caused by <italic>Sporisorium scitamineum</italic>
, has been threatening global sugarcane production. Breeding smut resistant sugarcane varieties has been proven to be the most effective method of controlling this particular disease. However, a lack of genome information of sugarcane has hindered the development of genome-assisted resistance breeding programs. Furthermore, the molecular basis of sugarcane response to <italic>S. scitamineum</italic>
infection at the proteome level was incomplete and combining proteomic and transcriptional analysis has not yet been conducted.</p>
</sec>
<sec><title>Results</title>
<p>We identified 273 and 341 differentially expressed proteins in sugarcane smut-resistant (Yacheng05-179) and susceptible (ROC22) genotypes at 48 h after inoculation with <italic>S. scitamineum</italic>
by employing an isobaric tag for relative and absolute quantification (iTRAQ). The proteome quantitative data were then validated by multiple reaction monitoring (MRM). The integrative analysis showed that the correlations between the quantitative proteins and the corresponding genes that was obtained in our previous transcriptome study were poor, which were 0.1502 and 0.2466 in Yacheng05-179 and ROC22, respectively, thereby revealing a post-transcriptional event during Yacheng05-179-<italic>S. scitamineum</italic>
incompatible interaction and ROC22-<italic>S. scitamineum</italic>
compatible interaction. Most differentially expressed proteins were closely related to sugarcane smut resistance such as beta-1,3-glucanase, peroxidase, pathogenesis-related protein 1 (PR1), endo-1,4-beta-xylanase, heat shock protein, and lectin. Ethylene and gibberellic acid pathways, phenylpropanoid metabolism and PRs, such as PR1, PR2, PR5 and PR14, were more active in Yacheng05-179, which suggested of their possible roles in sugarcane smut resistance. However, calcium signaling, reactive oxygen species, nitric oxide, and abscisic acid pathways in Yacheng05-179 were repressed by <italic>S. scitamineum</italic>
and might not be crucial for defense against this particular pathogen.</p>
</sec>
<sec><title>Conclusions</title>
<p>These results indicated complex resistance-related events in sugarcane-<italic>S. scitamineum</italic>
interaction, and provided novel insights into the molecular mechanism underlying the response of sugarcane to <italic>S. scitamineum</italic>
infection.</p>
</sec>
<sec><title>Electronic supplementary material</title>
<p>The online version of this article (doi:10.1186/s12864-016-3146-8) contains supplementary material, which is available to authorized users.</p>
</sec>
</div>
</front>
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<pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">BMC Genomics</journal-id>
<journal-id journal-id-type="iso-abbrev">BMC Genomics</journal-id>
<journal-title-group><journal-title>BMC Genomics</journal-title>
</journal-title-group>
<issn pub-type="epub">1471-2164</issn>
<publisher><publisher-name>BioMed Central</publisher-name>
<publisher-loc>London</publisher-loc>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">27733120</article-id>
<article-id pub-id-type="pmc">5062822</article-id>
<article-id pub-id-type="publisher-id">3146</article-id>
<article-id pub-id-type="doi">10.1186/s12864-016-3146-8</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject>
</subj-group>
</article-categories>
<title-group><article-title>Comparative proteomics reveals that central metabolism changes are associated with resistance against <italic>Sporisorium scitamineum</italic>
in sugarcane</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Su</surname>
<given-names>Yachun</given-names>
</name>
<address><email>syc2009mail@163.com</email>
</address>
<xref ref-type="aff" rid="Aff1">1</xref>
</contrib>
<contrib contrib-type="author" corresp="yes"><name><surname>Xu</surname>
<given-names>Liping</given-names>
</name>
<address><email>xlpmail@126.com</email>
</address>
<xref ref-type="aff" rid="Aff1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Wang</surname>
<given-names>Zhuqing</given-names>
</name>
<address><email>zhuqingemail@163.com</email>
</address>
<xref ref-type="aff" rid="Aff1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Peng</surname>
<given-names>Qiong</given-names>
</name>
<address><email>pengqiongfj@163.com</email>
</address>
<xref ref-type="aff" rid="Aff1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Yang</surname>
<given-names>Yuting</given-names>
</name>
<address><email>yytjiayou@126.com</email>
</address>
<xref ref-type="aff" rid="Aff1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Chen</surname>
<given-names>Yun</given-names>
</name>
<address><email>sweetchenyun@163.com</email>
</address>
<xref ref-type="aff" rid="Aff1">1</xref>
</contrib>
<contrib contrib-type="author" corresp="yes"><name><surname>Que</surname>
<given-names>Youxiong</given-names>
</name>
<address><email>queyouxiong@126.com</email>
</address>
<xref ref-type="aff" rid="Aff1">1</xref>
<xref ref-type="aff" rid="Aff2">2</xref>
</contrib>
<aff id="Aff1"><label>1</label>
Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</aff>
<aff id="Aff2"><label>2</label>
Guangxi Collaborative Innovation Center of Sugarcane Industry, Guangxi University, Nanning, 530005 China</aff>
</contrib-group>
<pub-date pub-type="epub"><day>12</day>
<month>10</month>
<year>2016</year>
</pub-date>
<pub-date pub-type="pmc-release"><day>12</day>
<month>10</month>
<year>2016</year>
</pub-date>
<pub-date pub-type="collection"><year>2016</year>
</pub-date>
<volume>17</volume>
<elocation-id>800</elocation-id>
<history><date date-type="received"><day>13</day>
<month>1</month>
<year>2016</year>
</date>
<date date-type="accepted"><day>5</day>
<month>10</month>
<year>2016</year>
</date>
</history>
<permissions><copyright-statement>© The Author(s). 2016</copyright-statement>
<license license-type="OpenAccess"><license-p><bold>Open Access</bold>
This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">http://creativecommons.org/licenses/by/4.0/</ext-link>
), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/publicdomain/zero/1.0/">http://creativecommons.org/publicdomain/zero/1.0/</ext-link>
) applies to the data made available in this article, unless otherwise stated.</license-p>
</license>
</permissions>
<abstract id="Abs1"><sec><title>Background</title>
<p>Sugarcane smut, which is caused by <italic>Sporisorium scitamineum</italic>
, has been threatening global sugarcane production. Breeding smut resistant sugarcane varieties has been proven to be the most effective method of controlling this particular disease. However, a lack of genome information of sugarcane has hindered the development of genome-assisted resistance breeding programs. Furthermore, the molecular basis of sugarcane response to <italic>S. scitamineum</italic>
infection at the proteome level was incomplete and combining proteomic and transcriptional analysis has not yet been conducted.</p>
</sec>
<sec><title>Results</title>
<p>We identified 273 and 341 differentially expressed proteins in sugarcane smut-resistant (Yacheng05-179) and susceptible (ROC22) genotypes at 48 h after inoculation with <italic>S. scitamineum</italic>
by employing an isobaric tag for relative and absolute quantification (iTRAQ). The proteome quantitative data were then validated by multiple reaction monitoring (MRM). The integrative analysis showed that the correlations between the quantitative proteins and the corresponding genes that was obtained in our previous transcriptome study were poor, which were 0.1502 and 0.2466 in Yacheng05-179 and ROC22, respectively, thereby revealing a post-transcriptional event during Yacheng05-179-<italic>S. scitamineum</italic>
incompatible interaction and ROC22-<italic>S. scitamineum</italic>
compatible interaction. Most differentially expressed proteins were closely related to sugarcane smut resistance such as beta-1,3-glucanase, peroxidase, pathogenesis-related protein 1 (PR1), endo-1,4-beta-xylanase, heat shock protein, and lectin. Ethylene and gibberellic acid pathways, phenylpropanoid metabolism and PRs, such as PR1, PR2, PR5 and PR14, were more active in Yacheng05-179, which suggested of their possible roles in sugarcane smut resistance. However, calcium signaling, reactive oxygen species, nitric oxide, and abscisic acid pathways in Yacheng05-179 were repressed by <italic>S. scitamineum</italic>
and might not be crucial for defense against this particular pathogen.</p>
</sec>
<sec><title>Conclusions</title>
<p>These results indicated complex resistance-related events in sugarcane-<italic>S. scitamineum</italic>
interaction, and provided novel insights into the molecular mechanism underlying the response of sugarcane to <italic>S. scitamineum</italic>
infection.</p>
</sec>
<sec><title>Electronic supplementary material</title>
<p>The online version of this article (doi:10.1186/s12864-016-3146-8) contains supplementary material, which is available to authorized users.</p>
</sec>
</abstract>
<kwd-group xml:lang="en"><title>Keywords</title>
<kwd><italic>Saccharum</italic>
spp.</kwd>
<kwd><italic>Sporisorium scitamineum</italic>
</kwd>
<kwd>iTRAQ</kwd>
<kwd>RNA-seq</kwd>
<kwd>Transcriptome</kwd>
<kwd>Proteome</kwd>
</kwd-group>
<funding-group><award-group><funding-source><institution>Natural Science Foundation of Fujian province, China</institution>
</funding-source>
<award-id>2015J06006</award-id>
<award-id>2015J05055</award-id>
<principal-award-recipient><name><surname>Su</surname>
<given-names>Yachun</given-names>
</name>
<name><surname>Que</surname>
<given-names>Youxiong</given-names>
</name>
</principal-award-recipient>
</award-group>
<award-group><funding-source><institution>the Research Funds for Distinguished Young Scientists in Fujian Agriculture and Forestry University</institution>
</funding-source>
<award-id>xjq201630</award-id>
<principal-award-recipient><name><surname>Su</surname>
<given-names>Yachun</given-names>
</name>
</principal-award-recipient>
</award-group>
<award-group><funding-source><institution>the Program for New Century Excellent Talents in Fujian Province University</institution>
</funding-source>
<award-id>JA14095</award-id>
<principal-award-recipient><name><surname>Que</surname>
<given-names>Youxiong</given-names>
</name>
</principal-award-recipient>
</award-group>
<award-group><funding-source><institution>the earmarked fund for the Modern Agriculture Technology of China</institution>
</funding-source>
<award-id>CARS-20</award-id>
<principal-award-recipient><name><surname>Xu</surname>
<given-names>Liping</given-names>
</name>
</principal-award-recipient>
</award-group>
<award-group><funding-source><institution>Research Funds for Distinguished Young Scientists in Fujian Provincial Department of Education</institution>
</funding-source>
<award-id>JA13090</award-id>
<principal-award-recipient><name><surname>Que</surname>
<given-names>Youxiong</given-names>
</name>
</principal-award-recipient>
</award-group>
</funding-group>
<custom-meta-group><custom-meta><meta-name>issue-copyright-statement</meta-name>
<meta-value>© The Author(s) 2016</meta-value>
</custom-meta>
</custom-meta-group>
</article-meta>
</front>
</pmc>
<affiliations><list><country><li>République populaire de Chine</li>
</country>
<region><li>Fujian</li>
</region>
<settlement><li>Fuzhou</li>
</settlement>
</list>
<tree><country name="République populaire de Chine"><region name="Fujian"><name sortKey="Su, Yachun" sort="Su, Yachun" uniqKey="Su Y" first="Yachun" last="Su">Yachun Su</name>
</region>
<name sortKey="Chen, Yun" sort="Chen, Yun" uniqKey="Chen Y" first="Yun" last="Chen">Yun Chen</name>
<name sortKey="Peng, Qiong" sort="Peng, Qiong" uniqKey="Peng Q" first="Qiong" last="Peng">Qiong Peng</name>
<name sortKey="Que, Youxiong" sort="Que, Youxiong" uniqKey="Que Y" first="Youxiong" last="Que">Youxiong Que</name>
<name sortKey="Que, Youxiong" sort="Que, Youxiong" uniqKey="Que Y" first="Youxiong" last="Que">Youxiong Que</name>
<name sortKey="Wang, Zhuqing" sort="Wang, Zhuqing" uniqKey="Wang Z" first="Zhuqing" last="Wang">Zhuqing Wang</name>
<name sortKey="Xu, Liping" sort="Xu, Liping" uniqKey="Xu L" first="Liping" last="Xu">Liping Xu</name>
<name sortKey="Yang, Yuting" sort="Yang, Yuting" uniqKey="Yang Y" first="Yuting" last="Yang">Yuting Yang</name>
</country>
</tree>
</affiliations>
</record>
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