Genome-scale mRNA and small RNA transcriptomic insights into initiation of citrus apomixis
Identifieur interne : 002171 ( Ncbi/Merge ); précédent : 002170; suivant : 002172Genome-scale mRNA and small RNA transcriptomic insights into initiation of citrus apomixis
Auteurs : Jian-Mei Long ; Zheng Liu ; Xiao-Meng Wu ; Yan-Ni Fang ; Hui-Hui Jia ; Zong-Zhou Xie ; Xiu-Xin Deng ; Wen-Wu GuoSource :
- Journal of Experimental Botany [ 0022-0957 ] ; 2016.
Abstract
Integrative mRNA and small RNA analysis between poly- and monoembryonic ovules reveals involvement of an oxidative stress response and a novel miRNA-target regulatory module in initiation of citrus apomixis.
Url:
DOI: 10.1093/jxb/erw338
PubMed: 27619233
PubMed Central: 5066493
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome-scale mRNA and small RNA transcriptomic insights into initiation of citrus apomixis</title><author><name sortKey="Long, Jian Mei" sort="Long, Jian Mei" uniqKey="Long J" first="Jian-Mei" last="Long">Jian-Mei Long</name></author><author><name sortKey="Liu, Zheng" sort="Liu, Zheng" uniqKey="Liu Z" first="Zheng" last="Liu">Zheng Liu</name></author><author><name sortKey="Wu, Xiao Meng" sort="Wu, Xiao Meng" uniqKey="Wu X" first="Xiao-Meng" last="Wu">Xiao-Meng Wu</name></author><author><name sortKey="Fang, Yan Ni" sort="Fang, Yan Ni" uniqKey="Fang Y" first="Yan-Ni" last="Fang">Yan-Ni Fang</name></author><author><name sortKey="Jia, Hui Hui" sort="Jia, Hui Hui" uniqKey="Jia H" first="Hui-Hui" last="Jia">Hui-Hui Jia</name></author><author><name sortKey="Xie, Zong Zhou" sort="Xie, Zong Zhou" uniqKey="Xie Z" first="Zong-Zhou" last="Xie">Zong-Zhou Xie</name></author><author><name sortKey="Deng, Xiu Xin" sort="Deng, Xiu Xin" uniqKey="Deng X" first="Xiu-Xin" last="Deng">Xiu-Xin Deng</name></author><author><name sortKey="Guo, Wen Wu" sort="Guo, Wen Wu" uniqKey="Guo W" first="Wen-Wu" last="Guo">Wen-Wu Guo</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27619233</idno><idno type="pmc">5066493</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5066493</idno><idno type="RBID">PMC:5066493</idno><idno type="doi">10.1093/jxb/erw338</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">001044</idno><idno type="wicri:Area/Pmc/Curation">001043</idno><idno type="wicri:Area/Pmc/Checkpoint">000160</idno><idno type="wicri:Area/Ncbi/Merge">002171</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genome-scale mRNA and small RNA transcriptomic insights into initiation of citrus apomixis</title><author><name sortKey="Long, Jian Mei" sort="Long, Jian Mei" uniqKey="Long J" first="Jian-Mei" last="Long">Jian-Mei Long</name></author><author><name sortKey="Liu, Zheng" sort="Liu, Zheng" uniqKey="Liu Z" first="Zheng" last="Liu">Zheng Liu</name></author><author><name sortKey="Wu, Xiao Meng" sort="Wu, Xiao Meng" uniqKey="Wu X" first="Xiao-Meng" last="Wu">Xiao-Meng Wu</name></author><author><name sortKey="Fang, Yan Ni" sort="Fang, Yan Ni" uniqKey="Fang Y" first="Yan-Ni" last="Fang">Yan-Ni Fang</name></author><author><name sortKey="Jia, Hui Hui" sort="Jia, Hui Hui" uniqKey="Jia H" first="Hui-Hui" last="Jia">Hui-Hui Jia</name></author><author><name sortKey="Xie, Zong Zhou" sort="Xie, Zong Zhou" uniqKey="Xie Z" first="Zong-Zhou" last="Xie">Zong-Zhou Xie</name></author><author><name sortKey="Deng, Xiu Xin" sort="Deng, Xiu Xin" uniqKey="Deng X" first="Xiu-Xin" last="Deng">Xiu-Xin Deng</name></author><author><name sortKey="Guo, Wen Wu" sort="Guo, Wen Wu" uniqKey="Guo W" first="Wen-Wu" last="Guo">Wen-Wu Guo</name></author></analytic><series><title level="j">Journal of Experimental Botany</title><idno type="ISSN">0022-0957</idno><idno type="eISSN">1460-2431</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><title>Highlight</title><p>Integrative mRNA and small RNA analysis between poly- and monoembryonic ovules reveals involvement of an oxidative stress response and a novel miRNA-target regulatory module in initiation of citrus apomixis.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Albert, S" uniqKey="Albert S">S Albert</name></author><author><name sortKey="Despres, B" uniqKey="Despres B">B Després</name></author><author><name sortKey="Guilleminot, J" uniqKey="Guilleminot J">J Guilleminot</name></author><author><name sortKey="Bechtold, N" uniqKey="Bechtold N">N Bechtold</name></author><author><name sortKey="Pelletier, G" uniqKey="Pelletier G">G 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<front><journal-meta><journal-id journal-id-type="nlm-ta">J Exp Bot</journal-id><journal-id journal-id-type="iso-abbrev">J. Exp. Bot</journal-id><journal-id journal-id-type="hwp">jexbot</journal-id><journal-id journal-id-type="publisher-id">exbotj</journal-id><journal-title-group><journal-title>Journal of Experimental Botany</journal-title></journal-title-group><issn pub-type="ppub">0022-0957</issn><issn pub-type="epub">1460-2431</issn><publisher><publisher-name>Oxford University Press</publisher-name><publisher-loc>UK</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">27619233</article-id><article-id pub-id-type="pmc">5066493</article-id><article-id pub-id-type="doi">10.1093/jxb/erw338</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Paper</subject></subj-group></article-categories><title-group><article-title>Genome-scale mRNA and small RNA transcriptomic insights into initiation of citrus apomixis</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Long</surname><given-names>Jian-Mei</given-names></name><xref ref-type="corresp" rid="c2"><sup>†</sup></xref></contrib><contrib contrib-type="author"><name><surname>Liu</surname><given-names>Zheng</given-names></name><xref ref-type="corresp" rid="c2"><sup>†</sup></xref></contrib><contrib contrib-type="author"><name><surname>Wu</surname><given-names>Xiao-Meng</given-names></name><xref ref-type="corresp" rid="c1">*</xref></contrib><contrib contrib-type="author"><name><surname>Fang</surname><given-names>Yan-Ni</given-names></name></contrib><contrib contrib-type="author"><name><surname>Jia</surname><given-names>Hui-Hui</given-names></name></contrib><contrib contrib-type="author"><name><surname>Xie</surname><given-names>Zong-Zhou</given-names></name></contrib><contrib contrib-type="author"><name><surname>Deng</surname><given-names>Xiu-Xin</given-names></name></contrib><contrib contrib-type="author"><name><surname>Guo</surname><given-names>Wen-Wu</given-names></name><xref ref-type="corresp" rid="c1">*</xref></contrib><aff id="AF0001"><institution>Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University</institution>,<addr-line>Wuhan 430070</addr-line>,<country>China</country></aff></contrib-group><author-notes><corresp id="c1">* Correspondence: <email>guoww@mail.hzau.edu.cn</email> or <email>wuxm@mail.hzau.edu.cn</email></corresp><corresp id="c2"><sup>†</sup> These two authors contributed equally to this work.</corresp><fn id="fn0001" fn-type="other"><p>Editor: Lars Hennig, Swedish University of Agricultural Sciences</p></fn></author-notes><pub-date pub-type="ppub"><month>10</month><year>2016</year></pub-date><pub-date pub-type="epub"><day>12</day><month>9</month><year>2016</year></pub-date><pub-date pub-type="pmc-release"><day>12</day><month>9</month><year>2016</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on the
<volume>67</volume><issue>19</issue><fpage>5743</fpage><lpage>5756</lpage><permissions><copyright-statement>© The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.</copyright-statement><copyright-year>2016</copyright-year><license license-type="creative-commons" xlink:href="http://creativecommons.org/licenses/by/3.0"><license-p>This is an Open Access article distributed under the terms of the Creative Commons Attribution License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link>), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p></license></permissions><abstract abstract-type="precis"><title>Highlight</title><p>Integrative mRNA and small RNA analysis between poly- and monoembryonic ovules reveals involvement of an oxidative stress response and a novel miRNA-target regulatory module in initiation of citrus apomixis.</p></abstract><abstract><p>Nucellar embryony (NE) is an adventitious form of apomixis common in citrus, wherein asexual embryos initiate directly from nucellar cells surrounding the embryo sac. NE enables the fixation of desirable agronomic traits and the production of clonal offspring of virus-free rootstock, but impedes progress in hybrid breeding. In spite of the great importance of NE in citrus breeding and commercial production, little is understood about the underlying molecular mechanisms. In this study, the stages of nucellar embryo initiation (NEI) were determined for two polyembryonic citrus cultivars via histological observation. To explore the genes and regulatory pathways involved in NEI, we performed mRNA-seq and sRNA-seq analyses of ovules immediately prior to and at stages during NEI in the two pairs of cultivars. A total of 305 differentially expressed genes (DEGs) were identified between the poly- and monoembryonic ovules. Gene ontology (GO) analysis revealed that several processes are significantly enriched based on DEGs. In particular, response to stress, and especially response to oxidative stress, was over-represented in polyembryonic ovules. Nearly 150 miRNAs, comprising ~90 conserved and ~60 novel miRNAs, were identified in the ovules of either cultivar pair. Only two differentially expressed miRNAs (DEMs) were identified, of which the novel miRN23-5p was repressed whereas the targets accumulated in the polyembryonic ovules. This integrated study on the transcriptional and post-transcriptional regulatory profiles between poly- and monoembryonic citrus ovules provides new insights into the mechanism of NE, which should contribute to revealing the regulatory mechanisms of plant apomixis.</p></abstract><kwd-group><title>Key words:</title><kwd>Apomixis</kwd><kwd>citrus</kwd><kwd>miRNA</kwd><kwd>nucellar embryony</kwd><kwd>ovule</kwd><kwd>RNA-seq.</kwd></kwd-group><funding-group><award-group id="funding-1"><funding-source>National Natural Science Foundation of China
<named-content content-type="funder-id">http://dx.doi.org/10.13039/501100001809</named-content></funding-source><award-id>31521092</award-id><award-id>31501726</award-id><award-id>31530065</award-id></award-group></funding-group><counts><page-count count="14"></page-count></counts></article-meta></front></pmc><affiliations><list></list><tree><noCountry><name sortKey="Deng, Xiu Xin" sort="Deng, Xiu Xin" uniqKey="Deng X" first="Xiu-Xin" last="Deng">Xiu-Xin Deng</name><name sortKey="Fang, Yan Ni" sort="Fang, Yan Ni" uniqKey="Fang Y" first="Yan-Ni" last="Fang">Yan-Ni Fang</name><name sortKey="Guo, Wen Wu" sort="Guo, Wen Wu" uniqKey="Guo W" first="Wen-Wu" last="Guo">Wen-Wu Guo</name><name sortKey="Jia, Hui Hui" sort="Jia, Hui Hui" uniqKey="Jia H" first="Hui-Hui" last="Jia">Hui-Hui Jia</name><name sortKey="Liu, Zheng" sort="Liu, Zheng" uniqKey="Liu Z" first="Zheng" last="Liu">Zheng Liu</name><name sortKey="Long, Jian Mei" sort="Long, Jian Mei" uniqKey="Long J" first="Jian-Mei" last="Long">Jian-Mei Long</name><name sortKey="Wu, Xiao Meng" sort="Wu, Xiao Meng" uniqKey="Wu X" first="Xiao-Meng" last="Wu">Xiao-Meng Wu</name><name sortKey="Xie, Zong Zhou" sort="Xie, Zong Zhou" uniqKey="Xie Z" first="Zong-Zhou" last="Xie">Zong-Zhou Xie</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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