Phylogenetic and Molecular Variability Studies Reveal a New Genetic Clade of Citrus leprosis virus C
Identifieur interne : 002058 ( Ncbi/Merge ); précédent : 002057; suivant : 002059Phylogenetic and Molecular Variability Studies Reveal a New Genetic Clade of Citrus leprosis virus C
Auteurs : Pedro Luis Ramos-González ; Camila Chabi-Jesus [Brésil] ; Orlene Guerra-Peraza ; Michèle Claire Breton ; Gabriella Dias Arena [Brésil] ; Maria Andreia Nunes ; Elliot Watanabe Kitajima ; Marcos Antonio Machado ; Juliana Freitas-Astúa [Brésil]Source :
- Viruses [ 1999-4915 ] ; 2016.
Abstract
Url:
DOI: 10.3390/v8060153
PubMed: 27275832
PubMed Central: 4926173
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000406
- to stream Pmc, to step Curation: 000405
- to stream Pmc, to step Checkpoint: 000070
Links to Exploration step
PMC:4926173Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Phylogenetic and Molecular Variability Studies Reveal a New Genetic Clade of <italic>Citrus leprosis virus C</italic>
</title>
<author><name sortKey="Ramos Gonzalez, Pedro Luis" sort="Ramos Gonzalez, Pedro Luis" uniqKey="Ramos Gonzalez P" first="Pedro Luis" last="Ramos-González">Pedro Luis Ramos-González</name>
<affiliation><nlm:aff id="af1-viruses-08-00153">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, Instituto Agronômico de Campinas, Cordeirópolis, São Paulo 13490-970, Brazil;<email>plrg1970@gmail.com</email>
(P.L.R.-G.);<email>millachabi@yahoo.com.br</email>
(C.C.-J.);<email>mbreton@uol.com.br</email>
(M.C.B.);<email>gaby.arena@gmail.com</email>
(G.D.A.);<email>mandreian@yahoo.com</email>
(M.A.N.);<email>marcos@centrodecitricultura.br</email>
(M.A.M.)</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="af2-viruses-08-00153">Departamento de Bioquímica Fitopatológica, Instituto Biológico, São Paulo 04014-002, Brazil;<email>onelio@protonmail.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Chabi Jesus, Camila" sort="Chabi Jesus, Camila" uniqKey="Chabi Jesus C" first="Camila" last="Chabi-Jesus">Camila Chabi-Jesus</name>
<affiliation><nlm:aff id="af1-viruses-08-00153">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, Instituto Agronômico de Campinas, Cordeirópolis, São Paulo 13490-970, Brazil;<email>plrg1970@gmail.com</email>
(P.L.R.-G.);<email>millachabi@yahoo.com.br</email>
(C.C.-J.);<email>mbreton@uol.com.br</email>
(M.C.B.);<email>gaby.arena@gmail.com</email>
(G.D.A.);<email>mandreian@yahoo.com</email>
(M.A.N.);<email>marcos@centrodecitricultura.br</email>
(M.A.M.)</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="af2-viruses-08-00153">Departamento de Bioquímica Fitopatológica, Instituto Biológico, São Paulo 04014-002, Brazil;<email>onelio@protonmail.com</email>
</nlm:aff>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="af3-viruses-08-00153">Departamento de Microbiologia Agrícola, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Piracicaba, São Paulo 13418-900, Brazil</nlm:aff>
<country xml:lang="fr">Brésil</country>
<wicri:regionArea>Departamento de Microbiologia Agrícola, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Piracicaba, São Paulo 13418-900</wicri:regionArea>
<placeName><settlement type="city">São Paulo</settlement>
<region type="state">État de São Paulo</region>
</placeName>
<orgName type="university">Université de São Paulo</orgName>
<placeName><settlement type="city">São Paulo</settlement>
<region type="state">État de São Paulo</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Guerra Peraza, Orlene" sort="Guerra Peraza, Orlene" uniqKey="Guerra Peraza O" first="Orlene" last="Guerra-Peraza">Orlene Guerra-Peraza</name>
<affiliation><nlm:aff id="af2-viruses-08-00153">Departamento de Bioquímica Fitopatológica, Instituto Biológico, São Paulo 04014-002, Brazil;<email>onelio@protonmail.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Breton, Michele Claire" sort="Breton, Michele Claire" uniqKey="Breton M" first="Michèle Claire" last="Breton">Michèle Claire Breton</name>
<affiliation><nlm:aff id="af1-viruses-08-00153">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, Instituto Agronômico de Campinas, Cordeirópolis, São Paulo 13490-970, Brazil;<email>plrg1970@gmail.com</email>
(P.L.R.-G.);<email>millachabi@yahoo.com.br</email>
(C.C.-J.);<email>mbreton@uol.com.br</email>
(M.C.B.);<email>gaby.arena@gmail.com</email>
(G.D.A.);<email>mandreian@yahoo.com</email>
(M.A.N.);<email>marcos@centrodecitricultura.br</email>
(M.A.M.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Arena, Gabriella Dias" sort="Arena, Gabriella Dias" uniqKey="Arena G" first="Gabriella Dias" last="Arena">Gabriella Dias Arena</name>
<affiliation><nlm:aff id="af1-viruses-08-00153">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, Instituto Agronômico de Campinas, Cordeirópolis, São Paulo 13490-970, Brazil;<email>plrg1970@gmail.com</email>
(P.L.R.-G.);<email>millachabi@yahoo.com.br</email>
(C.C.-J.);<email>mbreton@uol.com.br</email>
(M.C.B.);<email>gaby.arena@gmail.com</email>
(G.D.A.);<email>mandreian@yahoo.com</email>
(M.A.N.);<email>marcos@centrodecitricultura.br</email>
(M.A.M.)</nlm:aff>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="af4-viruses-08-00153">Instituto de Biologia, Universidade de Campinas, Campinas, São Paulo 13083-970, Brazil</nlm:aff>
<country xml:lang="fr">Brésil</country>
<wicri:regionArea>Instituto de Biologia, Universidade de Campinas, Campinas, São Paulo 13083-970</wicri:regionArea>
<placeName><settlement type="city">São Paulo</settlement>
<region type="state">État de São Paulo</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Nunes, Maria Andreia" sort="Nunes, Maria Andreia" uniqKey="Nunes M" first="Maria Andreia" last="Nunes">Maria Andreia Nunes</name>
<affiliation><nlm:aff id="af1-viruses-08-00153">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, Instituto Agronômico de Campinas, Cordeirópolis, São Paulo 13490-970, Brazil;<email>plrg1970@gmail.com</email>
(P.L.R.-G.);<email>millachabi@yahoo.com.br</email>
(C.C.-J.);<email>mbreton@uol.com.br</email>
(M.C.B.);<email>gaby.arena@gmail.com</email>
(G.D.A.);<email>mandreian@yahoo.com</email>
(M.A.N.);<email>marcos@centrodecitricultura.br</email>
(M.A.M.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Kitajima, Elliot Watanabe" sort="Kitajima, Elliot Watanabe" uniqKey="Kitajima E" first="Elliot Watanabe" last="Kitajima">Elliot Watanabe Kitajima</name>
<affiliation><nlm:aff id="af5-viruses-08-00153">Departamento de Fitopatologia e Nematologia, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Piracicaba, São Paulo 13418-900, Brazil;<email>ewkitaji@usp.br</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Machado, Marcos Antonio" sort="Machado, Marcos Antonio" uniqKey="Machado M" first="Marcos Antonio" last="Machado">Marcos Antonio Machado</name>
<affiliation><nlm:aff id="af1-viruses-08-00153">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, Instituto Agronômico de Campinas, Cordeirópolis, São Paulo 13490-970, Brazil;<email>plrg1970@gmail.com</email>
(P.L.R.-G.);<email>millachabi@yahoo.com.br</email>
(C.C.-J.);<email>mbreton@uol.com.br</email>
(M.C.B.);<email>gaby.arena@gmail.com</email>
(G.D.A.);<email>mandreian@yahoo.com</email>
(M.A.N.);<email>marcos@centrodecitricultura.br</email>
(M.A.M.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Freitas Astua, Juliana" sort="Freitas Astua, Juliana" uniqKey="Freitas Astua J" first="Juliana" last="Freitas-Astúa">Juliana Freitas-Astúa</name>
<affiliation><nlm:aff id="af2-viruses-08-00153">Departamento de Bioquímica Fitopatológica, Instituto Biológico, São Paulo 04014-002, Brazil;<email>onelio@protonmail.com</email>
</nlm:aff>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="af6-viruses-08-00153">Embrapa Cassava and Fruits, Cruz das Almas, Bahia 44380-000, Brazil</nlm:aff>
<country xml:lang="fr">Brésil</country>
<wicri:regionArea>Embrapa Cassava and Fruits, Cruz das Almas, Bahia 44380-000</wicri:regionArea>
<wicri:noRegion>Bahia 44380-000</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">27275832</idno>
<idno type="pmc">4926173</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4926173</idno>
<idno type="RBID">PMC:4926173</idno>
<idno type="doi">10.3390/v8060153</idno>
<date when="2016">2016</date>
<idno type="wicri:Area/Pmc/Corpus">000406</idno>
<idno type="wicri:Area/Pmc/Curation">000405</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000070</idno>
<idno type="wicri:Area/Ncbi/Merge">002058</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Phylogenetic and Molecular Variability Studies Reveal a New Genetic Clade of <italic>Citrus leprosis virus C</italic>
</title>
<author><name sortKey="Ramos Gonzalez, Pedro Luis" sort="Ramos Gonzalez, Pedro Luis" uniqKey="Ramos Gonzalez P" first="Pedro Luis" last="Ramos-González">Pedro Luis Ramos-González</name>
<affiliation><nlm:aff id="af1-viruses-08-00153">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, Instituto Agronômico de Campinas, Cordeirópolis, São Paulo 13490-970, Brazil;<email>plrg1970@gmail.com</email>
(P.L.R.-G.);<email>millachabi@yahoo.com.br</email>
(C.C.-J.);<email>mbreton@uol.com.br</email>
(M.C.B.);<email>gaby.arena@gmail.com</email>
(G.D.A.);<email>mandreian@yahoo.com</email>
(M.A.N.);<email>marcos@centrodecitricultura.br</email>
(M.A.M.)</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="af2-viruses-08-00153">Departamento de Bioquímica Fitopatológica, Instituto Biológico, São Paulo 04014-002, Brazil;<email>onelio@protonmail.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Chabi Jesus, Camila" sort="Chabi Jesus, Camila" uniqKey="Chabi Jesus C" first="Camila" last="Chabi-Jesus">Camila Chabi-Jesus</name>
<affiliation><nlm:aff id="af1-viruses-08-00153">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, Instituto Agronômico de Campinas, Cordeirópolis, São Paulo 13490-970, Brazil;<email>plrg1970@gmail.com</email>
(P.L.R.-G.);<email>millachabi@yahoo.com.br</email>
(C.C.-J.);<email>mbreton@uol.com.br</email>
(M.C.B.);<email>gaby.arena@gmail.com</email>
(G.D.A.);<email>mandreian@yahoo.com</email>
(M.A.N.);<email>marcos@centrodecitricultura.br</email>
(M.A.M.)</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="af2-viruses-08-00153">Departamento de Bioquímica Fitopatológica, Instituto Biológico, São Paulo 04014-002, Brazil;<email>onelio@protonmail.com</email>
</nlm:aff>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="af3-viruses-08-00153">Departamento de Microbiologia Agrícola, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Piracicaba, São Paulo 13418-900, Brazil</nlm:aff>
<country xml:lang="fr">Brésil</country>
<wicri:regionArea>Departamento de Microbiologia Agrícola, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Piracicaba, São Paulo 13418-900</wicri:regionArea>
<placeName><settlement type="city">São Paulo</settlement>
<region type="state">État de São Paulo</region>
</placeName>
<orgName type="university">Université de São Paulo</orgName>
<placeName><settlement type="city">São Paulo</settlement>
<region type="state">État de São Paulo</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Guerra Peraza, Orlene" sort="Guerra Peraza, Orlene" uniqKey="Guerra Peraza O" first="Orlene" last="Guerra-Peraza">Orlene Guerra-Peraza</name>
<affiliation><nlm:aff id="af2-viruses-08-00153">Departamento de Bioquímica Fitopatológica, Instituto Biológico, São Paulo 04014-002, Brazil;<email>onelio@protonmail.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Breton, Michele Claire" sort="Breton, Michele Claire" uniqKey="Breton M" first="Michèle Claire" last="Breton">Michèle Claire Breton</name>
<affiliation><nlm:aff id="af1-viruses-08-00153">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, Instituto Agronômico de Campinas, Cordeirópolis, São Paulo 13490-970, Brazil;<email>plrg1970@gmail.com</email>
(P.L.R.-G.);<email>millachabi@yahoo.com.br</email>
(C.C.-J.);<email>mbreton@uol.com.br</email>
(M.C.B.);<email>gaby.arena@gmail.com</email>
(G.D.A.);<email>mandreian@yahoo.com</email>
(M.A.N.);<email>marcos@centrodecitricultura.br</email>
(M.A.M.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Arena, Gabriella Dias" sort="Arena, Gabriella Dias" uniqKey="Arena G" first="Gabriella Dias" last="Arena">Gabriella Dias Arena</name>
<affiliation><nlm:aff id="af1-viruses-08-00153">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, Instituto Agronômico de Campinas, Cordeirópolis, São Paulo 13490-970, Brazil;<email>plrg1970@gmail.com</email>
(P.L.R.-G.);<email>millachabi@yahoo.com.br</email>
(C.C.-J.);<email>mbreton@uol.com.br</email>
(M.C.B.);<email>gaby.arena@gmail.com</email>
(G.D.A.);<email>mandreian@yahoo.com</email>
(M.A.N.);<email>marcos@centrodecitricultura.br</email>
(M.A.M.)</nlm:aff>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="af4-viruses-08-00153">Instituto de Biologia, Universidade de Campinas, Campinas, São Paulo 13083-970, Brazil</nlm:aff>
<country xml:lang="fr">Brésil</country>
<wicri:regionArea>Instituto de Biologia, Universidade de Campinas, Campinas, São Paulo 13083-970</wicri:regionArea>
<placeName><settlement type="city">São Paulo</settlement>
<region type="state">État de São Paulo</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Nunes, Maria Andreia" sort="Nunes, Maria Andreia" uniqKey="Nunes M" first="Maria Andreia" last="Nunes">Maria Andreia Nunes</name>
<affiliation><nlm:aff id="af1-viruses-08-00153">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, Instituto Agronômico de Campinas, Cordeirópolis, São Paulo 13490-970, Brazil;<email>plrg1970@gmail.com</email>
(P.L.R.-G.);<email>millachabi@yahoo.com.br</email>
(C.C.-J.);<email>mbreton@uol.com.br</email>
(M.C.B.);<email>gaby.arena@gmail.com</email>
(G.D.A.);<email>mandreian@yahoo.com</email>
(M.A.N.);<email>marcos@centrodecitricultura.br</email>
(M.A.M.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Kitajima, Elliot Watanabe" sort="Kitajima, Elliot Watanabe" uniqKey="Kitajima E" first="Elliot Watanabe" last="Kitajima">Elliot Watanabe Kitajima</name>
<affiliation><nlm:aff id="af5-viruses-08-00153">Departamento de Fitopatologia e Nematologia, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Piracicaba, São Paulo 13418-900, Brazil;<email>ewkitaji@usp.br</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Machado, Marcos Antonio" sort="Machado, Marcos Antonio" uniqKey="Machado M" first="Marcos Antonio" last="Machado">Marcos Antonio Machado</name>
<affiliation><nlm:aff id="af1-viruses-08-00153">Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, Instituto Agronômico de Campinas, Cordeirópolis, São Paulo 13490-970, Brazil;<email>plrg1970@gmail.com</email>
(P.L.R.-G.);<email>millachabi@yahoo.com.br</email>
(C.C.-J.);<email>mbreton@uol.com.br</email>
(M.C.B.);<email>gaby.arena@gmail.com</email>
(G.D.A.);<email>mandreian@yahoo.com</email>
(M.A.N.);<email>marcos@centrodecitricultura.br</email>
(M.A.M.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Freitas Astua, Juliana" sort="Freitas Astua, Juliana" uniqKey="Freitas Astua J" first="Juliana" last="Freitas-Astúa">Juliana Freitas-Astúa</name>
<affiliation><nlm:aff id="af2-viruses-08-00153">Departamento de Bioquímica Fitopatológica, Instituto Biológico, São Paulo 04014-002, Brazil;<email>onelio@protonmail.com</email>
</nlm:aff>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="af6-viruses-08-00153">Embrapa Cassava and Fruits, Cruz das Almas, Bahia 44380-000, Brazil</nlm:aff>
<country xml:lang="fr">Brésil</country>
<wicri:regionArea>Embrapa Cassava and Fruits, Cruz das Almas, Bahia 44380-000</wicri:regionArea>
<wicri:noRegion>Bahia 44380-000</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">Viruses</title>
<idno type="eISSN">1999-4915</idno>
<imprint><date when="2016">2016</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p><italic>Citrus leprosis virus C</italic>
(CiLV-C) causes a severe disease affecting citrus orchards in the Western hemisphere. This study reveals the molecular variability of the virus by analyzing four genomic regions (<italic>p29</italic>
, <italic>p15</italic>
, <italic>MP</italic>
and RNA2-intergenic region) distributed over its two RNAs. Nucleotide diversity (π) values were relatively low but statistically different over the analyzed genes and subpopulations, indicating their distinct evolutionary history. Values of π<italic><sub>p</sub>
</italic>
<sub>29</sub>
and π<italic><sub>MP</sub>
</italic>
were higher than those of π<italic><sub>p</sub>
</italic>
<sub>15</sub>
and π<sub>RNA2–IR,</sub>
whereas π<italic><sub>MP</sub>
</italic>
was increased due to novel discovered isolates phylogenetically clustered in a divergent clade that we called SJP. Isolate BR_SP_SJP_01 RNA1 and RNA2 sequences, clade SJP, showed an identity of 85.6% and 88.4%, respectively, with those corresponding to CiLV-C, the type member of the genus <italic>Cilevirus</italic>
, and its RNA2 5′-proximal region was revealed as a minor donor in a putative inter-clade recombination event. In addition to citrus, BR_SP_SJP_01 naturally infects the weed <italic>Commelina benghalensis</italic>
and is efficiently transmitted by <italic>Brevipalpus yothersi</italic>
mites. Our data demonstrated that negative selection was the major force operating in the evaluated viral coding regions and defined amino acids putatively relevant for the biological function of cilevirus proteins. This work provides molecular tools and sets up a framework for further epidemiological studies.</p>
</div>
</front>
<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Roy, A" uniqKey="Roy A">A. Roy</name>
</author>
<author><name sortKey="Hartung, J S" uniqKey="Hartung J">J.S. Hartung</name>
</author>
<author><name sortKey="Schneider, W L" uniqKey="Schneider W">W.L. Schneider</name>
</author>
<author><name sortKey="Shao, J" uniqKey="Shao J">J. Shao</name>
</author>
<author><name sortKey="Leon, M G" uniqKey="Leon M">M.G. Leon</name>
</author>
<author><name sortKey="Melzer, M J" uniqKey="Melzer M">M.J. Melzer</name>
</author>
<author><name sortKey="Beard, J J" uniqKey="Beard J">J.J. Beard</name>
</author>
<author><name sortKey="Otero Colina, G" uniqKey="Otero Colina G">G. Otero-Colina</name>
</author>
<author><name sortKey="Bauchan, G R" uniqKey="Bauchan G">G.R. Bauchan</name>
</author>
<author><name sortKey="Ochoa, R" uniqKey="Ochoa R">R. Ochoa</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bitancourt, A" uniqKey="Bitancourt A">A. Bitancourt</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bitancourt, A" uniqKey="Bitancourt A">A. Bitancourt</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Fawcett, H S" uniqKey="Fawcett H">H.S. Fawcett</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Spegazzini, C" uniqKey="Spegazzini C">C. Spegazzini</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Childers, C C" uniqKey="Childers C">C.C. Childers</name>
</author>
<author><name sortKey="Rodrigues, J C" uniqKey="Rodrigues J">J.C. Rodrigues</name>
</author>
<author><name sortKey="Derrick, K S" uniqKey="Derrick K">K.S. Derrick</name>
</author>
<author><name sortKey="Achor, D S" uniqKey="Achor D">D.S. Achor</name>
</author>
<author><name sortKey="French, J V" uniqKey="French J">J.V. French</name>
</author>
<author><name sortKey="Welbourn, W C" uniqKey="Welbourn W">W.C. Welbourn</name>
</author>
<author><name sortKey="Ochoa, R" uniqKey="Ochoa R">R. Ochoa</name>
</author>
<author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bastianel, M" uniqKey="Bastianel M">M. Bastianel</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
<author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
<author><name sortKey="Machado, M A" uniqKey="Machado M">M.A. Machado</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Caceres, S" uniqKey="Caceres S">S. Cáceres</name>
</author>
<author><name sortKey="Aguirre, A" uniqKey="Aguirre A">A. Aguirre</name>
</author>
<author><name sortKey="Costa, N" uniqKey="Costa N">N. Costa</name>
</author>
<author><name sortKey="De Coll, O" uniqKey="De Coll O">O. de Coll</name>
</author>
<author><name sortKey="Gonzales Segnana, L" uniqKey="Gonzales Segnana L">L. Gonzáles Segnana</name>
</author>
<author><name sortKey="Fari A, N" uniqKey="Fari A N">N. Fariña</name>
</author>
<author><name sortKey="Tassi, A D" uniqKey="Tassi A">A.D. Tassi</name>
</author>
<author><name sortKey="Calegario, R F" uniqKey="Calegario R">R.F. Calegario</name>
</author>
<author><name sortKey="Moraes, G J De" uniqKey="Moraes G">G.J.de Moraes</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Castillo, I I" uniqKey="Castillo I">I.I. Castillo</name>
</author>
<author><name sortKey="Diaz, L F" uniqKey="Diaz L">L.F. Diaz</name>
</author>
<author><name sortKey="Mendez, W" uniqKey="Mendez W">W. Mendez</name>
</author>
<author><name sortKey="Otero Colina, G" uniqKey="Otero Colina G">G. Otero-Colina</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
<author><name sortKey="Locali Fabris, E C" uniqKey="Locali Fabris E">E.C. Locali-Fabris</name>
</author>
<author><name sortKey="Moraes, G J" uniqKey="Moraes G">G.J. Moraes</name>
</author>
<author><name sortKey="Calegario, R F" uniqKey="Calegario R">R.F. Calegario</name>
</author>
<author><name sortKey="Tassi, A D" uniqKey="Tassi A">A.D. Tassi</name>
</author>
<author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Leon, G A" uniqKey="Leon G">G.A. Leon</name>
</author>
<author><name sortKey="Realpe, C E" uniqKey="Realpe C">C.E. Realpe</name>
</author>
<author><name sortKey="Garzon, P A" uniqKey="Garzon P">P.A. Garzon</name>
</author>
<author><name sortKey="Rodriguez, J A" uniqKey="Rodriguez J">J.A. Rodriguez</name>
</author>
<author><name sortKey="Moreno, M G" uniqKey="Moreno M">M.G. Moreno</name>
</author>
<author><name sortKey="Childers, C C" uniqKey="Childers C">C.C. Childers</name>
</author>
<author><name sortKey="Achor, D" uniqKey="Achor D">D. Achor</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
<author><name sortKey="Antonioli Luizon, R" uniqKey="Antonioli Luizon R">R. Antonioli-Luizon</name>
</author>
<author><name sortKey="Salaroli, R B" uniqKey="Salaroli R">R.B. Salaroli</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Dominguez, F" uniqKey="Dominguez F">F. Dominguez</name>
</author>
<author><name sortKey="Bernal, A" uniqKey="Bernal A">A. Bernal</name>
</author>
<author><name sortKey="Childers, C C" uniqKey="Childers C">C.C. Childers</name>
</author>
<author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
<author><name sortKey="De Dominguez, F S" uniqKey="De Dominguez F">F.S. de Dominguez</name>
</author>
<author><name sortKey="Bernal, A" uniqKey="Bernal A">A. Bernal</name>
</author>
<author><name sortKey="Childers, C C" uniqKey="Childers C">C.C. Childers</name>
</author>
<author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Cruz Jaramillo, J L" uniqKey="Cruz Jaramillo J">J.L. Cruz-Jaramillo</name>
</author>
<author><name sortKey="Ruiz Medrano, R" uniqKey="Ruiz Medrano R">R. Ruiz-Medrano</name>
</author>
<author><name sortKey="Rojas Morales, L" uniqKey="Rojas Morales L">L. Rojas-Morales</name>
</author>
<author><name sortKey="L Pez Buenfil, J A" uniqKey="L Pez Buenfil J">J.A. López-Buenfil</name>
</author>
<author><name sortKey="Morales Galvan, O" uniqKey="Morales Galvan O">O. Morales-Galván</name>
</author>
<author><name sortKey="Chavarin Palacio, C" uniqKey="Chavarin Palacio C">C. Chavarín-Palacio</name>
</author>
<author><name sortKey="Ramirez Pool, J A" uniqKey="Ramirez Pool J">J.A. Ramírez-Pool</name>
</author>
<author><name sortKey="Xoconostle Cazares, B" uniqKey="Xoconostle Cazares B">B. Xoconostle-Cázares</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Roy, A" uniqKey="Roy A">A. Roy</name>
</author>
<author><name sortKey="Stone, A L" uniqKey="Stone A">A.L. Stone</name>
</author>
<author><name sortKey="Shao, J" uniqKey="Shao J">J. Shao</name>
</author>
<author><name sortKey="Otero Colina, G" uniqKey="Otero Colina G">G. Otero-Colina</name>
</author>
<author><name sortKey="Wei, G" uniqKey="Wei G">G. Wei</name>
</author>
<author><name sortKey="Choudhary, N" uniqKey="Choudhary N">N. Choudhary</name>
</author>
<author><name sortKey="Achor, D" uniqKey="Achor D">D. Achor</name>
</author>
<author><name sortKey="Levy, L" uniqKey="Levy L">L. Levy</name>
</author>
<author><name sortKey="Nakhla, M K" uniqKey="Nakhla M">M.K. Nakhla</name>
</author>
<author><name sortKey="Hartung, J S" uniqKey="Hartung J">J.S. Hartung</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Roy, A" uniqKey="Roy A">A. Roy</name>
</author>
<author><name sortKey="Choudhary, N" uniqKey="Choudhary N">N. Choudhary</name>
</author>
<author><name sortKey="Guillermo, L M" uniqKey="Guillermo L">L.M. Guillermo</name>
</author>
<author><name sortKey="Shao, J" uniqKey="Shao J">J. Shao</name>
</author>
<author><name sortKey="Govindarajulu, A" uniqKey="Govindarajulu A">A. Govindarajulu</name>
</author>
<author><name sortKey="Achor, D" uniqKey="Achor D">D. Achor</name>
</author>
<author><name sortKey="Wei, G" uniqKey="Wei G">G. Wei</name>
</author>
<author><name sortKey="Picton, D D" uniqKey="Picton D">D.D. Picton</name>
</author>
<author><name sortKey="Levy, L" uniqKey="Levy L">L. Levy</name>
</author>
<author><name sortKey="Nakhla, M K" uniqKey="Nakhla M">M.K. Nakhla</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rodrigues, J C V" uniqKey="Rodrigues J">J.C.V. Rodrigues</name>
</author>
<author><name sortKey="Zuniga Reyes, J A" uniqKey="Zuniga Reyes J">J.A. Zuniga Reyes</name>
</author>
<author><name sortKey="Achor, D S" uniqKey="Achor D">D.S. Achor</name>
</author>
<author><name sortKey="Childers, C C" uniqKey="Childers C">C.C. Childers</name>
</author>
<author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="G Mez, E C" uniqKey="G Mez E">E.C. Gómez</name>
</author>
<author><name sortKey="Vargas, M R" uniqKey="Vargas M">M.R. Vargas</name>
</author>
<author><name sortKey="Rivadameira, C" uniqKey="Rivadameira C">C. Rivadameira</name>
</author>
<author><name sortKey="Locali, E C" uniqKey="Locali E">E.C. Locali</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
<author><name sortKey="Astua Monge, G" uniqKey="Astua Monge G">G. Astúa-Monge</name>
</author>
<author><name sortKey="Rodrigues, J C V" uniqKey="Rodrigues J">J.C.V. Rodrigues</name>
</author>
<author><name sortKey="Mesa Cobo, N C" uniqKey="Mesa Cobo N">N.C. Mesa Cobo</name>
</author>
<author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Le N, M G" uniqKey="Le N M">M.G. León</name>
</author>
<author><name sortKey="Becerra, C H" uniqKey="Becerra C">C.H. Becerra</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
<author><name sortKey="Salaroli, R B" uniqKey="Salaroli R">R.B. Salaroli</name>
</author>
<author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Araya Gonzales, J" uniqKey="Araya Gonzales J">J. Araya-Gonzáles</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Mejia, L" uniqKey="Mejia L">L. Mejia</name>
</author>
<author><name sortKey="Paniagua, A" uniqKey="Paniagua A">A. Paniagua</name>
</author>
<author><name sortKey="Cruz, N" uniqKey="Cruz N">N. Cruz</name>
</author>
<author><name sortKey="Porras, M" uniqKey="Porras M">M. Porras</name>
</author>
<author><name sortKey="Palmieri, M" uniqKey="Palmieri M">M. Palmieri</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Melzer, M J" uniqKey="Melzer M">M.J. Melzer</name>
</author>
<author><name sortKey="Sether, D M" uniqKey="Sether D">D.M. Sether</name>
</author>
<author><name sortKey="Borth, W B" uniqKey="Borth W">W.B. Borth</name>
</author>
<author><name sortKey="Hu, J S" uniqKey="Hu J">J.S. Hu</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Melzer, M J" uniqKey="Melzer M">M.J. Melzer</name>
</author>
<author><name sortKey="Simbajon, N" uniqKey="Simbajon N">N. Simbajon</name>
</author>
<author><name sortKey="Carillo, J" uniqKey="Carillo J">J. Carillo</name>
</author>
<author><name sortKey="Borth, W B" uniqKey="Borth W">W.B. Borth</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
<author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
<author><name sortKey="Neupane, K R" uniqKey="Neupane K">K.R. Neupane</name>
</author>
<author><name sortKey="Hu, J S" uniqKey="Hu J">J.S. Hu</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bastianel, M" uniqKey="Bastianel M">M. Bastianel</name>
</author>
<author><name sortKey="Novelli, V M" uniqKey="Novelli V">V.M. Novelli</name>
</author>
<author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
<author><name sortKey="Kubo, K S" uniqKey="Kubo K">K.S. Kubo</name>
</author>
<author><name sortKey="Bassanezi, R B" uniqKey="Bassanezi R">R.B. Bassanezi</name>
</author>
<author><name sortKey="Machado, M A" uniqKey="Machado M">M.A. Machado</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rodrigues, J C V" uniqKey="Rodrigues J">J.C.V. Rodrigues</name>
</author>
<author><name sortKey="Childers, C C" uniqKey="Childers C">C.C. Childers</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
<author><name sortKey="Chagas, C M" uniqKey="Chagas C">C.M. Chagas</name>
</author>
<author><name sortKey="Rodrigues, J C" uniqKey="Rodrigues J">J.C. Rodrigues</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Beard, J J" uniqKey="Beard J">J.J. Beard</name>
</author>
<author><name sortKey="Ochoa, R" uniqKey="Ochoa R">R. Ochoa</name>
</author>
<author><name sortKey="Braswell, W E" uniqKey="Braswell W">W.E. Braswell</name>
</author>
<author><name sortKey="Bauchan, G R" uniqKey="Bauchan G">G.R. Bauchan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Garita, L" uniqKey="Garita L">L. Garita</name>
</author>
<author><name sortKey="Tassi, A D" uniqKey="Tassi A">A.D. Tassi</name>
</author>
<author><name sortKey="Calegario, R F" uniqKey="Calegario R">R.F. Calegario</name>
</author>
<author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
<author><name sortKey="Carbonell, S A M" uniqKey="Carbonell S">S.A.M. Carbonell</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Garita, L C" uniqKey="Garita L">L.C. Garita</name>
</author>
<author><name sortKey="Tassi, A D" uniqKey="Tassi A">A.D. Tassi</name>
</author>
<author><name sortKey="Calegario, R F" uniqKey="Calegario R">R.F. Calegario</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
<author><name sortKey="Salaroli, R B" uniqKey="Salaroli R">R.B. Salaroli</name>
</author>
<author><name sortKey="Romao, G O" uniqKey="Romao G">G.O. Romão</name>
</author>
<author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Afonso, C L" uniqKey="Afonso C">C.L. Afonso</name>
</author>
<author><name sortKey="Amarasinghe, G K" uniqKey="Amarasinghe G">G.K. Amarasinghe</name>
</author>
<author><name sortKey="Banyai, K" uniqKey="Banyai K">K. Bányai</name>
</author>
<author><name sortKey="Bao, Y" uniqKey="Bao Y">Y. Bào</name>
</author>
<author><name sortKey="Basler, C F" uniqKey="Basler C">C.F. Basler</name>
</author>
<author><name sortKey="Bavari, S" uniqKey="Bavari S">S. Bavari</name>
</author>
<author><name sortKey="Bejerman, N" uniqKey="Bejerman N">N. Bejerman</name>
</author>
<author><name sortKey="Blasdell, K R" uniqKey="Blasdell K">K.R. Blasdell</name>
</author>
<author><name sortKey="Briand, F X" uniqKey="Briand F">F.-X. Briand</name>
</author>
<author><name sortKey="Briese, T" uniqKey="Briese T">T. Briese</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Locali Fabris, E C" uniqKey="Locali Fabris E">E.C. Locali-Fabris</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
<author><name sortKey="Machado, M A" uniqKey="Machado M">M.A. Machado</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Dietzgen, R G" uniqKey="Dietzgen R">R.G. Dietzgen</name>
</author>
<author><name sortKey="Kuhn, J H" uniqKey="Kuhn J">J.H. Kuhn</name>
</author>
<author><name sortKey="Clawson, A N" uniqKey="Clawson A">A.N. Clawson</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
<author><name sortKey="Goodin, M M" uniqKey="Goodin M">M.M. Goodin</name>
</author>
<author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
<author><name sortKey="Kondo, H" uniqKey="Kondo H">H. Kondo</name>
</author>
<author><name sortKey="Wetzel, T" uniqKey="Wetzel T">T. Wetzel</name>
</author>
<author><name sortKey="Whitfield, A E" uniqKey="Whitfield A">A.E. Whitfield</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Roy, A" uniqKey="Roy A">A. Roy</name>
</author>
<author><name sortKey="Leon, M G" uniqKey="Leon M">M.G. Leon</name>
</author>
<author><name sortKey="Stone, A L" uniqKey="Stone A">A.L. Stone</name>
</author>
<author><name sortKey="Schneider, W L" uniqKey="Schneider W">W.L. Schneider</name>
</author>
<author><name sortKey="Hartung, J" uniqKey="Hartung J">J. Hartung</name>
</author>
<author><name sortKey="Brlansky, R H" uniqKey="Brlansky R">R.H. Brlansky</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Locali Fabris, E C" uniqKey="Locali Fabris E">E.C. Locali-Fabris</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
<author><name sortKey="Souza, A A" uniqKey="Souza A">A.A. Souza</name>
</author>
<author><name sortKey="Takita, M A" uniqKey="Takita M">M.A. Takita</name>
</author>
<author><name sortKey="Astua Monge, G" uniqKey="Astua Monge G">G. Astúa-Monge</name>
</author>
<author><name sortKey="Antonioli Luizon, R" uniqKey="Antonioli Luizon R">R. Antonioli-Luizon</name>
</author>
<author><name sortKey="Rodrigues, V" uniqKey="Rodrigues V">V. Rodrigues</name>
</author>
<author><name sortKey="Targon, M L" uniqKey="Targon M">M.L. Targon</name>
</author>
<author><name sortKey="Machado, M A" uniqKey="Machado M">M.A. Machado</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kuchibhatla, D B" uniqKey="Kuchibhatla D">D.B. Kuchibhatla</name>
</author>
<author><name sortKey="Sherman, W A" uniqKey="Sherman W">W.A. Sherman</name>
</author>
<author><name sortKey="Chung, B Y W" uniqKey="Chung B">B.Y.W. Chung</name>
</author>
<author><name sortKey="Cook, S" uniqKey="Cook S">S. Cook</name>
</author>
<author><name sortKey="Schneider, G" uniqKey="Schneider G">G. Schneider</name>
</author>
<author><name sortKey="Eisenhaber, B" uniqKey="Eisenhaber B">B. Eisenhaber</name>
</author>
<author><name sortKey="Karlin, D G" uniqKey="Karlin D">D.G. Karlin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Pascon, R C" uniqKey="Pascon R">R.C. Pascon</name>
</author>
<author><name sortKey="Kitajima, J P" uniqKey="Kitajima J">J.P. Kitajima</name>
</author>
<author><name sortKey="Breton, M C" uniqKey="Breton M">M.C. Breton</name>
</author>
<author><name sortKey="Assumpcao, L" uniqKey="Assumpcao L">L. Assumpção</name>
</author>
<author><name sortKey="Greggio, C" uniqKey="Greggio C">C. Greggio</name>
</author>
<author><name sortKey="Zanca, A S" uniqKey="Zanca A">A.S. Zanca</name>
</author>
<author><name sortKey="Okura, V K" uniqKey="Okura V">V.K. Okura</name>
</author>
<author><name sortKey="Alegria, M C" uniqKey="Alegria M">M.C. Alegria</name>
</author>
<author><name sortKey="Camargo, M E" uniqKey="Camargo M">M.E. Camargo</name>
</author>
<author><name sortKey="Silva, G G" uniqKey="Silva G">G.G. Silva</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Weeks, A R" uniqKey="Weeks A">A.R. Weeks</name>
</author>
<author><name sortKey="Marec, F" uniqKey="Marec F">F. Marec</name>
</author>
<author><name sortKey="Breeuwer, J A" uniqKey="Breeuwer J">J.A. Breeuwer</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Childers, C C" uniqKey="Childers C">C.C. Childers</name>
</author>
<author><name sortKey="French, J V" uniqKey="French J">J.V. French</name>
</author>
<author><name sortKey="Rodrigues, J C" uniqKey="Rodrigues J">J.C. Rodrigues</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
<author><name sortKey="Alberti, G" uniqKey="Alberti G">G. Alberti</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Domingo Calap, P" uniqKey="Domingo Calap P">P. Domingo-Calap</name>
</author>
<author><name sortKey="Sanjuan, R" uniqKey="Sanjuan R">R. Sanjuán</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gibbs, A" uniqKey="Gibbs A">A. Gibbs</name>
</author>
<author><name sortKey="Calisher, C" uniqKey="Calisher C">C. Calisher</name>
</author>
<author><name sortKey="Garcia Arenal, F" uniqKey="Garcia Arenal F">F. García-Arenal</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Simon Loriere, E" uniqKey="Simon Loriere E">E. Simon-Loriere</name>
</author>
<author><name sortKey="Holmes, E C" uniqKey="Holmes E">E.C. Holmes</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bujarski, J J" uniqKey="Bujarski J">J.J. Bujarski</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Roossinck, M J" uniqKey="Roossinck M">M.J. Roossinck</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sztuba Soli Ska, J" uniqKey="Sztuba Soli Ska J">J. Sztuba-Solińska</name>
</author>
<author><name sortKey="Urbanowicz, A" uniqKey="Urbanowicz A">A. Urbanowicz</name>
</author>
<author><name sortKey="Figlerowicz, M" uniqKey="Figlerowicz M">M. Figlerowicz</name>
</author>
<author><name sortKey="Bujarski, J J" uniqKey="Bujarski J">J.J. Bujarski</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Greenbaum, B D" uniqKey="Greenbaum B">B.D. Greenbaum</name>
</author>
<author><name sortKey="Li, O T" uniqKey="Li O">O.T. Li</name>
</author>
<author><name sortKey="Poon, L L" uniqKey="Poon L">L.L. Poon</name>
</author>
<author><name sortKey="Levine, A J" uniqKey="Levine A">A.J. Levine</name>
</author>
<author><name sortKey="Rabadan, R" uniqKey="Rabadan R">R. Rabadan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Garcia Arenal, F" uniqKey="Garcia Arenal F">F. García-Arenal</name>
</author>
<author><name sortKey="Fraile, A" uniqKey="Fraile A">A. Fraile</name>
</author>
<author><name sortKey="Malpica, J M" uniqKey="Malpica J">J.M. Malpica</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gutierrez, S" uniqKey="Gutierrez S">S. Gutiérrez</name>
</author>
<author><name sortKey="Michalakis, Y" uniqKey="Michalakis Y">Y. Michalakis</name>
</author>
<author><name sortKey="Blanc, S" uniqKey="Blanc S">S. Blanc</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Acosta Leal, R" uniqKey="Acosta Leal R">R. Acosta-Leal</name>
</author>
<author><name sortKey="Duffy, S" uniqKey="Duffy S">S. Duffy</name>
</author>
<author><name sortKey="Xiong, Z" uniqKey="Xiong Z">Z. Xiong</name>
</author>
<author><name sortKey="Hammond, R W" uniqKey="Hammond R">R.W. Hammond</name>
</author>
<author><name sortKey="Elena, S F" uniqKey="Elena S">S.F. Elena</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Neves, M F" uniqKey="Neves M">M.F. Neves</name>
</author>
<author><name sortKey="Trombin, V G" uniqKey="Trombin V">V.G. Trombin</name>
</author>
<author><name sortKey="Lopes, F F" uniqKey="Lopes F">F.F. Lopes</name>
</author>
<author><name sortKey="Kalaki, R" uniqKey="Kalaki R">R. Kalaki</name>
</author>
<author><name sortKey="Milan, P" uniqKey="Milan P">P. Milan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Nunes, M A" uniqKey="Nunes M">M.A. Nunes</name>
</author>
<author><name sortKey="Bergamini, M P" uniqKey="Bergamini M">M.P. Bergamini</name>
</author>
<author><name sortKey="Coerini, L F" uniqKey="Coerini L">L.F. Coerini</name>
</author>
<author><name sortKey="Bastianel, M" uniqKey="Bastianel M">M. Bastianel</name>
</author>
<author><name sortKey="Novelli, V M" uniqKey="Novelli V">V.M. Novelli</name>
</author>
<author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Guerra, A" uniqKey="Guerra A">A. Guerra</name>
</author>
<author><name sortKey="Manjunath, K" uniqKey="Manjunath K">K. Manjunath</name>
</author>
<author><name sortKey="Rangel, E" uniqKey="Rangel E">E. Rangel</name>
</author>
<author><name sortKey="Brlansky, R H" uniqKey="Brlansky R">R.H. Brlansky</name>
</author>
<author><name sortKey="Lee, R F" uniqKey="Lee R">R.F. Lee</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Locali, E C" uniqKey="Locali E">E.C. Locali</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
<author><name sortKey="De Souza, A A" uniqKey="De Souza A">A.A. de Souza</name>
</author>
<author><name sortKey="Takita, M A" uniqKey="Takita M">M.A. Takita</name>
</author>
<author><name sortKey="Astua Monge, G" uniqKey="Astua Monge G">G. Astúa-Monge</name>
</author>
<author><name sortKey="Antonioli, R" uniqKey="Antonioli R">R. Antonioli</name>
</author>
<author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
<author><name sortKey="Machado, M A" uniqKey="Machado M">M.A. Machado</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Untergasser, A" uniqKey="Untergasser A">A. Untergasser</name>
</author>
<author><name sortKey="Cutcutache, I" uniqKey="Cutcutache I">I. Cutcutache</name>
</author>
<author><name sortKey="Koressaar, T" uniqKey="Koressaar T">T. Koressaar</name>
</author>
<author><name sortKey="Ye, J" uniqKey="Ye J">J. Ye</name>
</author>
<author><name sortKey="Faircloth, B C" uniqKey="Faircloth B">B.C. Faircloth</name>
</author>
<author><name sortKey="Remm, M" uniqKey="Remm M">M. Remm</name>
</author>
<author><name sortKey="Rozen, S G" uniqKey="Rozen S">S.G. Rozen</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Edgar, R C" uniqKey="Edgar R">R.C. Edgar</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Tamura, K" uniqKey="Tamura K">K. Tamura</name>
</author>
<author><name sortKey="Stecher, G" uniqKey="Stecher G">G. Stecher</name>
</author>
<author><name sortKey="Peterson, D" uniqKey="Peterson D">D. Peterson</name>
</author>
<author><name sortKey="Filipski, A" uniqKey="Filipski A">A. Filipski</name>
</author>
<author><name sortKey="Kumar, S" uniqKey="Kumar S">S. Kumar</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Librado, P" uniqKey="Librado P">P. Librado</name>
</author>
<author><name sortKey="Rozas, J" uniqKey="Rozas J">J. Rozas</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Delport, W" uniqKey="Delport W">W. Delport</name>
</author>
<author><name sortKey="Poon, A F" uniqKey="Poon A">A.F. Poon</name>
</author>
<author><name sortKey="Frost, S D" uniqKey="Frost S">S.D. Frost</name>
</author>
<author><name sortKey="Kosakovsky Pond, S L" uniqKey="Kosakovsky Pond S">S.L. Kosakovsky Pond</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kosakovsky Pond, S L" uniqKey="Kosakovsky Pond S">S.L. Kosakovsky Pond</name>
</author>
<author><name sortKey="Posada, D" uniqKey="Posada D">D. Posada</name>
</author>
<author><name sortKey="Gravenor, M B" uniqKey="Gravenor M">M.B. Gravenor</name>
</author>
<author><name sortKey="Woelk, C H" uniqKey="Woelk C">C.H. Woelk</name>
</author>
<author><name sortKey="Frost, S D W" uniqKey="Frost S">S.D.W. Frost</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Martin, D P" uniqKey="Martin D">D.P. Martin</name>
</author>
<author><name sortKey="Murrell, B" uniqKey="Murrell B">B. Murrell</name>
</author>
<author><name sortKey="Golden, M" uniqKey="Golden M">M. Golden</name>
</author>
<author><name sortKey="Khoosal, A" uniqKey="Khoosal A">A. Khoosal</name>
</author>
<author><name sortKey="Muhire, B" uniqKey="Muhire B">B. Muhire</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Pei, J" uniqKey="Pei J">J. Pei</name>
</author>
<author><name sortKey="Grishin, N V" uniqKey="Grishin N">N.V. Grishin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Notredame, C" uniqKey="Notredame C">C. Notredame</name>
</author>
<author><name sortKey="Higgins, D G" uniqKey="Higgins D">D.G. Higgins</name>
</author>
<author><name sortKey="Heringa, J" uniqKey="Heringa J">J. Heringa</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Robert, X" uniqKey="Robert X">X. Robert</name>
</author>
<author><name sortKey="Gouet, P" uniqKey="Gouet P">P. Gouet</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Zerbino, D R" uniqKey="Zerbino D">D.R. Zerbino</name>
</author>
<author><name sortKey="Birney, E" uniqKey="Birney E">E. Birney</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Knudsen, T" uniqKey="Knudsen T">T. Knudsen</name>
</author>
<author><name sortKey="Knudsen, B" uniqKey="Knudsen B">B. Knudsen</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Tamura, K" uniqKey="Tamura K">K. Tamura</name>
</author>
<author><name sortKey="Nei, M" uniqKey="Nei M">M. Nei</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hasegawa, M" uniqKey="Hasegawa M">M. Hasegawa</name>
</author>
<author><name sortKey="Kishino, H" uniqKey="Kishino H">H. Kishino</name>
</author>
<author><name sortKey="Yano, T" uniqKey="Yano T">T. Yano</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Pond, S L" uniqKey="Pond S">S.L. Pond</name>
</author>
<author><name sortKey="Frost, S D" uniqKey="Frost S">S.D. Frost</name>
</author>
<author><name sortKey="Muse, S V" uniqKey="Muse S">S.V. Muse</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rozanov, M N" uniqKey="Rozanov M">M.N. Rozanov</name>
</author>
<author><name sortKey="Koonin, E V" uniqKey="Koonin E">E.V. Koonin</name>
</author>
<author><name sortKey="Gorbalenya, A E" uniqKey="Gorbalenya A">A.E. Gorbalenya</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Wierzchoslawski, R" uniqKey="Wierzchoslawski R">R. Wierzchoslawski</name>
</author>
<author><name sortKey="Dzianott, A" uniqKey="Dzianott A">A. Dzianott</name>
</author>
<author><name sortKey="Bujarski, J" uniqKey="Bujarski J">J. Bujarski</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Wierzchoslawski, R" uniqKey="Wierzchoslawski R">R. Wierzchoslawski</name>
</author>
<author><name sortKey="Dzianott, A" uniqKey="Dzianott A">A. Dzianott</name>
</author>
<author><name sortKey="Kunimalayan, S" uniqKey="Kunimalayan S">S. Kunimalayan</name>
</author>
<author><name sortKey="Bujarski, J J" uniqKey="Bujarski J">J.J. Bujarski</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Martin, S" uniqKey="Martin S">S. Martin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rubio, L" uniqKey="Rubio L">L. Rubio</name>
</author>
<author><name sortKey="Ayll N, M A" uniqKey="Ayll N M">M.A. Ayllón</name>
</author>
<author><name sortKey="Kong, P" uniqKey="Kong P">P. Kong</name>
</author>
<author><name sortKey="Fernandez, A" uniqKey="Fernandez A">A. Fernández</name>
</author>
<author><name sortKey="Polek, M" uniqKey="Polek M">M. Polek</name>
</author>
<author><name sortKey="Guerri, J" uniqKey="Guerri J">J. Guerri</name>
</author>
<author><name sortKey="Moreno, P" uniqKey="Moreno P">P. Moreno</name>
</author>
<author><name sortKey="Falk, B W" uniqKey="Falk B">B.W. Falk</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Vives, M C" uniqKey="Vives M">M.C. Vives</name>
</author>
<author><name sortKey="Rubio, L" uniqKey="Rubio L">L. Rubio</name>
</author>
<author><name sortKey="Galipienso, L" uniqKey="Galipienso L">L. Galipienso</name>
</author>
<author><name sortKey="Navarro, L" uniqKey="Navarro L">L. Navarro</name>
</author>
<author><name sortKey="Moreno, P" uniqKey="Moreno P">P. Moreno</name>
</author>
<author><name sortKey="Guerri, J" uniqKey="Guerri J">J. Guerri</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hartung, J S" uniqKey="Hartung J">J.S. Hartung</name>
</author>
<author><name sortKey="Roy, A" uniqKey="Roy A">A. Roy</name>
</author>
<author><name sortKey="Fu, S" uniqKey="Fu S">S. Fu</name>
</author>
<author><name sortKey="Shao, J" uniqKey="Shao J">J. Shao</name>
</author>
<author><name sortKey="Schneider, W L" uniqKey="Schneider W">W.L. Schneider</name>
</author>
<author><name sortKey="Brlansky, R H" uniqKey="Brlansky R">R.H. Brlansky</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bastianel, M" uniqKey="Bastianel M">M. Bastianel</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
<author><name sortKey="Nicolini, F" uniqKey="Nicolini F">F. Nicolini</name>
</author>
<author><name sortKey="Segatti, N" uniqKey="Segatti N">N. Segatti</name>
</author>
<author><name sortKey="Novelli, V M" uniqKey="Novelli V">V.M. Novelli</name>
</author>
<author><name sortKey="Rodrigues, V" uniqKey="Rodrigues V">V. Rodrigues</name>
</author>
<author><name sortKey="Medina, C L" uniqKey="Medina C">C.L. Medina</name>
</author>
<author><name sortKey="Machado, M A" uniqKey="Machado M">M.A. Machado</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Arena, G D" uniqKey="Arena G">G.D. Arena</name>
</author>
<author><name sortKey="Bergamini, M P" uniqKey="Bergamini M">M.P. Bergamini</name>
</author>
<author><name sortKey="Tassi, A D" uniqKey="Tassi A">A.D. Tassi</name>
</author>
<author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
<author><name sortKey="Kubo, K S" uniqKey="Kubo K">K.S. Kubo</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Nunes, M A" uniqKey="Nunes M">M.A. Nunes</name>
</author>
<author><name sortKey="Lameiro, P" uniqKey="Lameiro P">P. Lameiro</name>
</author>
<author><name sortKey="Calegario, R F" uniqKey="Calegario R">R.F. Calegario</name>
</author>
<author><name sortKey="Bergamini, M" uniqKey="Bergamini M">M. Bergamini</name>
</author>
<author><name sortKey="Fender, L" uniqKey="Fender L">L. Fender</name>
</author>
<author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
<author><name sortKey="Bastianel, M" uniqKey="Bastianel M">M. Bastianel</name>
</author>
<author><name sortKey="Novelli, V M" uniqKey="Novelli V">V.M. Novelli</name>
</author>
<author><name sortKey="Freita Astua, J" uniqKey="Freita Astua J">J. Freita-Astua</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Pu, Y" uniqKey="Pu Y">Y. Pu</name>
</author>
<author><name sortKey="Kikuchi, A" uniqKey="Kikuchi A">A. Kikuchi</name>
</author>
<author><name sortKey="Moriyasu, Y" uniqKey="Moriyasu Y">Y. Moriyasu</name>
</author>
<author><name sortKey="Tomaru, M" uniqKey="Tomaru M">M. Tomaru</name>
</author>
<author><name sortKey="Jin, Y" uniqKey="Jin Y">Y. Jin</name>
</author>
<author><name sortKey="Suga, H" uniqKey="Suga H">H. Suga</name>
</author>
<author><name sortKey="Hagiwara, K" uniqKey="Hagiwara K">K. Hagiwara</name>
</author>
<author><name sortKey="Akita, F" uniqKey="Akita F">F. Akita</name>
</author>
<author><name sortKey="Shimizu, T" uniqKey="Shimizu T">T. Shimizu</name>
</author>
<author><name sortKey="Netsu, O" uniqKey="Netsu O">O. Netsu</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sin, S H" uniqKey="Sin S">S.-H. Sin</name>
</author>
<author><name sortKey="Mcnulty, B C" uniqKey="Mcnulty B">B.C. McNulty</name>
</author>
<author><name sortKey="Kennedy, G G" uniqKey="Kennedy G">G.G. Kennedy</name>
</author>
<author><name sortKey="Moyer, J W" uniqKey="Moyer J">J.W. Moyer</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Mushegian, A R" uniqKey="Mushegian A">A.R. Mushegian</name>
</author>
<author><name sortKey="Elena, S F" uniqKey="Elena S">S.F. Elena</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Weber, P H" uniqKey="Weber P">P.H. Weber</name>
</author>
<author><name sortKey="Bujarski, J J" uniqKey="Bujarski J">J.J. Bujarski</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Arrivabem, F" uniqKey="Arrivabem F">F. Arrivabem</name>
</author>
<author><name sortKey="Rodrigues, V" uniqKey="Rodrigues V">V. Rodrigues</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
<author><name sortKey="Bastianel, M" uniqKey="Bastianel M">M. Bastianel</name>
</author>
<author><name sortKey="Locali Fabris, E C" uniqKey="Locali Fabris E">E.C. Locali-Fabris</name>
</author>
<author><name sortKey="Antonioli Luizon, R" uniqKey="Antonioli Luizon R">R. Antonioli-Luizon</name>
</author>
<author><name sortKey="Novelli, V M" uniqKey="Novelli V">V.M. Novelli</name>
</author>
<author><name sortKey="Kitajima, E W" uniqKey="Kitajima E">E.W. Kitajima</name>
</author>
<author><name sortKey="Machado, M A" uniqKey="Machado M">M.A. Machado</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sanchez Velazquez, E J" uniqKey="Sanchez Velazquez E">E.J. Sánchez-Velázquez</name>
</author>
<author><name sortKey="Santillan Galicia, M T" uniqKey="Santillan Galicia M">M.T. Santillán-Galicia</name>
</author>
<author><name sortKey="Novelli, V M" uniqKey="Novelli V">V.M. Novelli</name>
</author>
<author><name sortKey="Nunes, M A" uniqKey="Nunes M">M.A. Nunes</name>
</author>
<author><name sortKey="Mora Aguilera, G" uniqKey="Mora Aguilera G">G. Mora-Aguilera</name>
</author>
<author><name sortKey="Valdez Carrasco, J M" uniqKey="Valdez Carrasco J">J.M. Valdez-Carrasco</name>
</author>
<author><name sortKey="Otero Colina, G" uniqKey="Otero Colina G">G. Otero-Colina</name>
</author>
<author><name sortKey="Freitas Astua, J" uniqKey="Freitas Astua J">J. Freitas-Astúa</name>
</author>
</analytic>
</biblStruct>
</listBibl>
</div1>
</back>
</TEI>
<pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Viruses</journal-id>
<journal-id journal-id-type="iso-abbrev">Viruses</journal-id>
<journal-id journal-id-type="publisher-id">viruses</journal-id>
<journal-title-group><journal-title>Viruses</journal-title>
</journal-title-group>
<issn pub-type="epub">1999-4915</issn>
<publisher><publisher-name>MDPI</publisher-name>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">27275832</article-id>
<article-id pub-id-type="pmc">4926173</article-id>
<article-id pub-id-type="doi">10.3390/v8060153</article-id>
<article-id pub-id-type="publisher-id">viruses-08-00153</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Article</subject>
</subj-group>
</article-categories>
<title-group><article-title>Phylogenetic and Molecular Variability Studies Reveal a New Genetic Clade of <italic>Citrus leprosis virus C</italic>
</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Ramos-González</surname>
<given-names>Pedro Luis</given-names>
</name>
<xref ref-type="aff" rid="af1-viruses-08-00153">1</xref>
<xref ref-type="aff" rid="af2-viruses-08-00153">2</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Chabi-Jesus</surname>
<given-names>Camila</given-names>
</name>
<xref ref-type="aff" rid="af1-viruses-08-00153">1</xref>
<xref ref-type="aff" rid="af2-viruses-08-00153">2</xref>
<xref ref-type="aff" rid="af3-viruses-08-00153">3</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Guerra-Peraza</surname>
<given-names>Orlene</given-names>
</name>
<xref ref-type="aff" rid="af2-viruses-08-00153">2</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Breton</surname>
<given-names>Michèle Claire</given-names>
</name>
<xref ref-type="aff" rid="af1-viruses-08-00153">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Arena</surname>
<given-names>Gabriella Dias</given-names>
</name>
<xref ref-type="aff" rid="af1-viruses-08-00153">1</xref>
<xref ref-type="aff" rid="af4-viruses-08-00153">4</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Nunes</surname>
<given-names>Maria Andreia</given-names>
</name>
<xref ref-type="aff" rid="af1-viruses-08-00153">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Kitajima</surname>
<given-names>Elliot Watanabe</given-names>
</name>
<xref ref-type="aff" rid="af5-viruses-08-00153">5</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Machado</surname>
<given-names>Marcos Antonio</given-names>
</name>
<xref ref-type="aff" rid="af1-viruses-08-00153">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Freitas-Astúa</surname>
<given-names>Juliana</given-names>
</name>
<xref ref-type="aff" rid="af2-viruses-08-00153">2</xref>
<xref ref-type="aff" rid="af6-viruses-08-00153">6</xref>
<xref rid="c1-viruses-08-00153" ref-type="corresp">*</xref>
</contrib>
</contrib-group>
<contrib-group><contrib contrib-type="editor"><name><surname>Hohn</surname>
<given-names>Thomas</given-names>
</name>
<role>Academic Editor</role>
</contrib>
</contrib-group>
<aff id="af1-viruses-08-00153"><label>1</label>
Laboratório de Biotecnologia, Centro de Citricultura Sylvio Moreira, Instituto Agronômico de Campinas, Cordeirópolis, São Paulo 13490-970, Brazil;<email>plrg1970@gmail.com</email>
(P.L.R.-G.);<email>millachabi@yahoo.com.br</email>
(C.C.-J.);<email>mbreton@uol.com.br</email>
(M.C.B.);<email>gaby.arena@gmail.com</email>
(G.D.A.);<email>mandreian@yahoo.com</email>
(M.A.N.);<email>marcos@centrodecitricultura.br</email>
(M.A.M.)</aff>
<aff id="af2-viruses-08-00153"><label>2</label>
Departamento de Bioquímica Fitopatológica, Instituto Biológico, São Paulo 04014-002, Brazil;<email>onelio@protonmail.com</email>
</aff>
<aff id="af3-viruses-08-00153"><label>3</label>
Departamento de Microbiologia Agrícola, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Piracicaba, São Paulo 13418-900, Brazil</aff>
<aff id="af4-viruses-08-00153"><label>4</label>
Instituto de Biologia, Universidade de Campinas, Campinas, São Paulo 13083-970, Brazil</aff>
<aff id="af5-viruses-08-00153"><label>5</label>
Departamento de Fitopatologia e Nematologia, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Piracicaba, São Paulo 13418-900, Brazil;<email>ewkitaji@usp.br</email>
</aff>
<aff id="af6-viruses-08-00153"><label>6</label>
Embrapa Cassava and Fruits, Cruz das Almas, Bahia 44380-000, Brazil</aff>
<author-notes><corresp id="c1-viruses-08-00153"><label>*</label>
Correspondence: <email>juliana.astua@embrapa.br</email>
; Tel.: +55-11-5087-1767</corresp>
</author-notes>
<pub-date pub-type="epub"><day>06</day>
<month>6</month>
<year>2016</year>
</pub-date>
<pub-date pub-type="collection"><month>6</month>
<year>2016</year>
</pub-date>
<volume>8</volume>
<issue>6</issue>
<elocation-id>153</elocation-id>
<history><date date-type="received"><day>11</day>
<month>3</month>
<year>2016</year>
</date>
<date date-type="accepted"><day>24</day>
<month>5</month>
<year>2016</year>
</date>
</history>
<permissions><copyright-statement>© 2016 by the authors; licensee MDPI, Basel, Switzerland.</copyright-statement>
<copyright-year>2016</copyright-year>
<license><license-p><pmc-comment>CREATIVE COMMONS</pmc-comment>
This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC-BY) license (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">http://creativecommons.org/licenses/by/4.0/</ext-link>
).</license-p>
</license>
</permissions>
<abstract><p><italic>Citrus leprosis virus C</italic>
(CiLV-C) causes a severe disease affecting citrus orchards in the Western hemisphere. This study reveals the molecular variability of the virus by analyzing four genomic regions (<italic>p29</italic>
, <italic>p15</italic>
, <italic>MP</italic>
and RNA2-intergenic region) distributed over its two RNAs. Nucleotide diversity (π) values were relatively low but statistically different over the analyzed genes and subpopulations, indicating their distinct evolutionary history. Values of π<italic><sub>p</sub>
</italic>
<sub>29</sub>
and π<italic><sub>MP</sub>
</italic>
were higher than those of π<italic><sub>p</sub>
</italic>
<sub>15</sub>
and π<sub>RNA2–IR,</sub>
whereas π<italic><sub>MP</sub>
</italic>
was increased due to novel discovered isolates phylogenetically clustered in a divergent clade that we called SJP. Isolate BR_SP_SJP_01 RNA1 and RNA2 sequences, clade SJP, showed an identity of 85.6% and 88.4%, respectively, with those corresponding to CiLV-C, the type member of the genus <italic>Cilevirus</italic>
, and its RNA2 5′-proximal region was revealed as a minor donor in a putative inter-clade recombination event. In addition to citrus, BR_SP_SJP_01 naturally infects the weed <italic>Commelina benghalensis</italic>
and is efficiently transmitted by <italic>Brevipalpus yothersi</italic>
mites. Our data demonstrated that negative selection was the major force operating in the evaluated viral coding regions and defined amino acids putatively relevant for the biological function of cilevirus proteins. This work provides molecular tools and sets up a framework for further epidemiological studies.</p>
</abstract>
<kwd-group><kwd>cilevirus</kwd>
<kwd>citrus leprosis</kwd>
<kwd><italic>Brevipalpus</italic>
-transmitted viruses</kwd>
</kwd-group>
</article-meta>
</front>
<floats-group><fig id="viruses-08-00153-f001" position="float"><label>Figure 1</label>
<caption><p>(<bold>a</bold>
) Citrus leprosis symptoms in sweet orange (<italic>Citrus sinensis</italic>
) fruits, twig and leaves. (<bold>b</bold>
) Genomic organization of <italic>Citrus leprosis virus C</italic>
(CiLV-C). Blue solid bars indicate regions used in the variability study. <italic>RdRp</italic>
: RNA-dependent RNA polymerase; <italic>p29</italic>
: putative coat protein; <italic>MP</italic>
: putative 30K superfamily movement protein; <italic>p15</italic>
, <italic>p61</italic>
and <italic>p24</italic>
: proteins with unknown functions. IR: intergenic region. A<sub>n</sub>
: poly(A) tail.</p>
</caption>
<graphic xlink:href="viruses-08-00153-g001"></graphic>
</fig>
<fig id="viruses-08-00153-f002" position="float"><label>Figure 2</label>
<caption><p>Midpoint-rooted neighbor joining phylogenetic trees of CiLV-C isolates based on four genomic regions. Isolates of the clade CRD and SJP were highlighted in blue and red, respectively. (<bold>a</bold>
) <italic>p29</italic>
complete sequence (792 nt); (<bold>b</bold>
) <italic>MP</italic>
partial sequence (300 nt); (<bold>c</bold>
) <italic>p15</italic>
complete sequence (393 nt); (<bold>d</bold>
) IR (940 nt); (<bold>e</bold>
) Fragment encompassing concatenated sequences of the RNA2 (<italic>p15</italic>
+ IR + <italic>MP</italic>
, 1633 nt). Sequences from CiLV-C2 isolate Colombia (CiLV-C2_Co, GenBank accessions JX000024 and JX000025) and CiLV-C2 isolate Hawaii (CiLV-C2_Hw, GenBank accessions KC626783 and KC626784) were incorporated as outgroup. Bootstrap support values (1000 iterations) of main branches are indicated. Branches with less than 50% bootstrap support were condensed.</p>
</caption>
<graphic xlink:href="viruses-08-00153-g002a"></graphic>
<graphic xlink:href="viruses-08-00153-g002b"></graphic>
</fig>
<fig id="viruses-08-00153-f003" position="float"><label>Figure 3</label>
<caption><p>Evidence of recombination in RNA2 of the isolate BR_PR_LDB_01. Similarity plots of the recombinant with the minor (isolate BR_SP_SJR_01) and major (isolate AR_02) parents are shown as obtained from the analysis of concatenated sequences of the RNA2 (<italic>p15</italic>
+ IR + <italic>MP</italic>
) using the RDP software.</p>
</caption>
<graphic xlink:href="viruses-08-00153-g003"></graphic>
</fig>
<fig id="viruses-08-00153-f004" position="float"><label>Figure 4</label>
<caption><p>Differential detection of CiLV-C isolates belonging to clades CRD or SJP. 1% agarose gel electrophoresis of RT-PCR products obtained from nine CiLV-C isolates. <italic>p29</italic>
CiLV-C CRD and <italic>p29</italic>
CiLV-C SJP indicate reactions carried out using specific primers designed to detect isolates of the clade CRD and SJP, respectively. Lane 1: molecular weight marker, 1 Kbp Plus DNA Ladder (Invitrogen, Carlsbad, CA, USA); lanes 2 & 13: healthy citrus plant; lanes 3 & 14: citrus tree infected with CiLV-C2 isolate Colombia; lanes 4 & 15: Arabidopsis plant infected with CiLV-C isolate BR_SP_SJP_01; lanes 5 & 16: citrus plant from Cordeirópolis, SP (positive control sample for the clade CRD); lanes 6 & 17: citrus plant, São José do Rio Preto, SP (source of the isolate BR_SP_SJP_01—positive sample for the clade SJP); lanes 7 & 18: tropical spiderwort plant, São José do Rio Preto, SP (isolate BR_SP_SJP_04); lanes 8 & 19: citrus plant, Argentina (isolate AR_02); lanes 9 & 20: citrus plant, Londrina, PR (isolate BR_PR_LDB_01); lanes 10 & 21: citrus plant, Brasília, DF (isolate BR_DF_BSB_01); lanes 11 & 22: citrus plant, Maringá, PR (isolate BR_PR_MGF_01); lanes 12 & 23: citrus plant, Itu, SP (isolate BR_SP_ITU_01).</p>
</caption>
<graphic xlink:href="viruses-08-00153-g004"></graphic>
</fig>
<fig id="viruses-08-00153-f005" position="float"><label>Figure 5</label>
<caption><p>Nucleotide identity plot among BR_SP_SJP_01 full-length genome and those from CiLV-C, CiLV-C2 Colombia and CiLV-C2 Hawaii. Plots were generated with a sliding window size of 300 nt and a shift of one nucleotide at a time from aligned sequences. Nucleotide position is indicated at the beginning of each ORF according to the BR_SP_SJP_01 sequence.</p>
</caption>
<graphic xlink:href="viruses-08-00153-g005"></graphic>
</fig>
<fig id="viruses-08-00153-f006" position="float"><label>Figure 6</label>
<caption><p>Deduced amino acid sequence alignments of P29 (<bold>a</bold>
) and P15 (<bold>b</bold>
) proteins from CiLV-C and CiLV-C2. Blue letters indicate positions under selection in CiLV-C as shown by a combination of SLAC, FEL and REL methods. (<bold>a</bold>
) Consensus predicted secondary structures of P29 proteins from CiLV-C and CilV-C2 are on the top and bottom of each block, respectively. α, alpha-helix; β, beta strand; (<bold>b</bold>
) Conserved Cys residues involved in a putative Zn-finger motif are highlighted with green stars.</p>
</caption>
<graphic xlink:href="viruses-08-00153-g006"></graphic>
</fig>
<table-wrap id="viruses-08-00153-t001" position="float"><object-id pub-id-type="pii">viruses-08-00153-t001_Table 1</object-id>
<label>Table 1</label>
<caption><p>Complete list of CiLV-C sequences used in this work. Accession numbers in the GenBank database for genomic region, host and year of collection of each viral isolates are indicated.</p>
</caption>
<table frame="hsides" rules="groups"><thead><tr><th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">Isolate Identification <sup>1</sup>
and Host <sup>2</sup>
of Collection</th>
<th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">Collection Year</th>
<th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">Viral Genomic Region</th>
<th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">GenBank Accession No.</th>
<th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">Reference</th>
</tr>
</thead>
<tbody><tr><td colspan="5" align="center" valign="middle" style="border-bottom:solid thin" rowspan="1">Brazilian isolates</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">BR_MG_AFE_01</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">2012</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093040</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">This work</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_AMP_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093041</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093078</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093139</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093106</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SE_AJU_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093042</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093079</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093140</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093107</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_ARA_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2014</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093043</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093080</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093141</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093108</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_PA_BEL_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093045</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR136415</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093143</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093110</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">BR_SP_BRM_01 (<italic>Commelina benghalensis</italic>
)</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">2012</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">JQ944802</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">[<xref rid="B49-viruses-08-00153" ref-type="bibr">49</xref>
]</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_BRM_02</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093046</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093084</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093144</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093112</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_DF_BSB_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093047</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093085</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093145</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093113</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">BR_SP_CMP_01</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">2012</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093049</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">This work</td>
</tr>
<tr><td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_CSB_01</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093050</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093086</td>
</tr>
<tr><td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_CLN_01</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093051</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093082</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_MG_CGZ_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093048</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093087</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093146</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093114</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_CCH_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093052</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093088</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093147</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093115</td>
</tr>
<tr><td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_CRD_01</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2006</td>
<td align="center" valign="middle" rowspan="1" colspan="1">RNA1</td>
<td align="center" valign="middle" rowspan="1" colspan="1">DQ352194</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">[<xref rid="B32-viruses-08-00153" ref-type="bibr">32</xref>
]</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">RNA2</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">DQ352195</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_CRD_02</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093053</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093089</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093148</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093116</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">BR_SP_CRD_03</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">2012</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093117</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">This work</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_CSM_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093054</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093083</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093149</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093111</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_GO_GYN_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093055</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093090</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093150</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093118</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">BR_MG_LAV_01</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">2012</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093120</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">This work</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SC_LSP_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093056</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093091</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093151</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093119</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_PR_LDB_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093057</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093092</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093152</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093121</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_AM_MAO_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093058</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093093</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093153</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093122</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_PR_MGF_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093059</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093094</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093154</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093123</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_MRN_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093060</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR136416</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093155</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093124</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">BR_SC_NCH_01</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">2012</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093061</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">BR_SC_NTB_01</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">2012</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093062</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">This work</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_TO_PMW_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093063</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093105</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093166</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093134</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_PRB_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2014</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093064</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093095</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093156</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093125</td>
</tr>
<tr><td rowspan="3" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_GO_PNT_01</td>
<td rowspan="3" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093065</td>
<td rowspan="3" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093096</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093126</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_PRT_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093066</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093097</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093157</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093127</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">BR_AC_RBR_01</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">2012</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093067</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">This work</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_ITU_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093070</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093099</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093159</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093129</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">BR_MG_STC_01</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">2012</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093069</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">This work</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_SAP_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093068</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093098</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093158</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093128</td>
</tr>
<tr><td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_JBT_01</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2006</td>
<td align="center" valign="middle" rowspan="1" colspan="1">RNA1</td>
<td align="center" valign="middle" rowspan="1" colspan="1">DQ157466</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">[<xref rid="B34-viruses-08-00153" ref-type="bibr">34</xref>
]</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">RNA2</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">DQ157465</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_SNG_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093071</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093100</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093160</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093130</td>
</tr>
<tr><td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_SJP_01</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1">RNA1</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KP336746</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">RNA2</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KP336747</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_SJP_02</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093072</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093101</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093161</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093135</td>
</tr>
<tr><td rowspan="3" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_SJP_03</td>
<td rowspan="3" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093167</td>
<td rowspan="3" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093162</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093136</td>
</tr>
<tr><td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_SJP_04 (<italic>Commelina benghalensis</italic>
)</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2013</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093077</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093137</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_SDM_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2015</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KT253463</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KT253469</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KT253475</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KT253481</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_SDM_02</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2015</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KT253464</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KT253470</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KT253476</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KT253482</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_SDM_03</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2015</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KT253465</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KT253471</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KT253477</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KT253483</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_SDM_04</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2015</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KT253466</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KT253472</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KT253478</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KT253484</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_SDM_05</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2015</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KT253467</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KT253473</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KT253479</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KT253485</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_SDM_06</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2015</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KT253468</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KT253474</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KT253480</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KT253486</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_RJ_TNG_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093073</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093102</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093163</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093131</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_SP_TTI_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093074</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093103</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093164</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093132</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">BR_MT_TRN_01</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093075</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093104</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093165</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093133</td>
</tr>
<tr><td rowspan="2" align="center" valign="middle" colspan="1">BR_MG_UBA_01</td>
<td rowspan="2" align="center" valign="middle" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093076</td>
<td rowspan="2" align="center" valign="middle" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093138</td>
</tr>
<tr><td colspan="5" align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1">Isolates from other countries</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">AR_01</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">2012</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">JX163907</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">[<xref rid="B8-viruses-08-00153" ref-type="bibr">8</xref>
]</td>
</tr>
<tr><td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">AR_02</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2012</td>
<td align="center" valign="middle" rowspan="1" colspan="1"><italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093044</td>
<td rowspan="4" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">This work</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093081</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" rowspan="1" colspan="1">KR093142</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">KR093109</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">CO_01</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">2005</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">DQ272491</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">[<xref rid="B10-viruses-08-00153" ref-type="bibr">10</xref>
]</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">MX_01</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">2010</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">HQ292778</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">[<xref rid="B9-viruses-08-00153" ref-type="bibr">9</xref>
]</td>
</tr>
<tr><td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">PA_01</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">2006</td>
<td align="center" valign="middle" rowspan="1" colspan="1">RNA1</td>
<td align="center" valign="middle" rowspan="1" colspan="1">DQ388512</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">[<xref rid="B50-viruses-08-00153" ref-type="bibr">50</xref>
]</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">RNA2</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">DQ388513</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">PY_01</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">2012</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1"><italic>MP</italic>
</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">JX163908</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">[<xref rid="B8-viruses-08-00153" ref-type="bibr">8</xref>
]</td>
</tr>
</tbody>
</table>
<table-wrap-foot><fn><p><sup>1</sup>
Unless otherwise indicated, the collection hosts for isolates described in this work were sweet orange (<italic>Citrus sinensis</italic>
L. Osb.) trees; <sup>2</sup>
Isolates were designated including several entries separated by underscores. First two letters identify the country (AR: Argentina; BR: Brazil; CO: Colombia; MX: Mexico; PA: Panama and PY: Paraguay), followed by the Brazilian state (AC: Acre; AM: Amazonas; DF: Distrito Federal; GO: Goiás; MG: Minas Gerais; MS: Mato Grosso do Sul; PA: Pará; PR: Paraná; RJ: Rio de Janeiro; SC: Santa Catarina; SE: Sergipe; SP: São Paulo and TO: Tocantins), the city of collection (AFE: Alfenas; AJU: Aracaju; AMP: Amparo; ARA: Araras; BEL: Belém; BRM: Borborema; BSB: Brasília; CCH: Conchal; CRD: Cordeirópolis; CGZ: Comendador Gomes; CLN: Colina; CMP: Campinas; CSB: Casa Branca; CSM: Cosmorama; GYN: Goiânia; ITU: Itu; JBT: Jaboticabal; LAV: Lavras; LDB: Londrina; LSP: Linha Espuma; MAO: Manaus; MGF: Maringá; MRN: Mirandópolis; NCH: Nova Erechim; NTB: Nova Itaberaba; PMW: Palmas; PNT: Planaltina; PRB: Piracicaba; PRT: Pratânia; SAP: Santo Antônio de Posse; SDM: Sud Mennucci; SJP: São José do Rio Preto; SNG: Serra Negra; STC: Santa Conceição; TNG: Tanguá; TRN: Terenos; TTI: Tatuí; UBA: Uberaba; UBT: Ubatuba), and the sample number.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="viruses-08-00153-t002" position="float"><object-id pub-id-type="pii">viruses-08-00153-t002_Table 2</object-id>
<label>Table 2</label>
<caption><p>Population genetic parameters and selection pressure estimates for four CiLV-C genomic regions. Independent analyses were carried out including all isolates and only those grouped within the clade CRD according to the phylogenetic study.</p>
</caption>
<table frame="hsides" rules="groups"><thead><tr><th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">Genomic Region</th>
<th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">Region Length (nt)</th>
<th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">Dataset <sup>1</sup>
/# of Isolates</th>
<th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">π</th>
<th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">h</th>
<th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">Hd</th>
<th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">dS</th>
<th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">dN</th>
<th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">ω (dN/dS)</th>
</tr>
</thead>
<tbody><tr><td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1"><bold><italic>p29</italic>
</bold>
</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">792</td>
<td align="center" valign="middle" rowspan="1" colspan="1">All/47</td>
<td align="center" valign="middle" rowspan="1" colspan="1">0.053 ± 0.009</td>
<td align="center" valign="middle" rowspan="1" colspan="1">40</td>
<td align="center" valign="middle" rowspan="1" colspan="1">0.990</td>
<td align="center" valign="middle" rowspan="1" colspan="1">0.252 ± 0.037 <sup>2</sup>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">0.018 ± 0.003 <sup>2</sup>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">0.07</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">CRD/38</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">0.009 ± 0.001</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">32</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">0.986</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">0.022 ± 0.004</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">0.004 ± 0.001</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">0.18</td>
</tr>
<tr><td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1"><bold><italic>p15</italic>
</bold>
</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">393</td>
<td align="center" valign="middle" rowspan="1" colspan="1">All/41</td>
<td align="center" valign="middle" rowspan="1" colspan="1">0.010 ± 0.001</td>
<td align="center" valign="middle" rowspan="1" colspan="1">30</td>
<td align="center" valign="middle" rowspan="1" colspan="1">0.961</td>
<td align="center" valign="middle" rowspan="1" colspan="1">0.014 ± 0.004</td>
<td align="center" valign="middle" rowspan="1" colspan="1">0.007 ± 0.002</td>
<td align="center" valign="middle" rowspan="1" colspan="1">0.50</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">CRD/31</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">0.010 ± 0.001</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">24</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">0.953</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">0.014 ± 0.004</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">0.008 ± 0.002</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">0.57</td>
</tr>
<tr><td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1"><bold><italic>MP</italic>
</bold>
</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">300</td>
<td align="center" valign="middle" rowspan="1" colspan="1">All/46</td>
<td align="center" valign="middle" rowspan="1" colspan="1">0.056 ± 0.009</td>
<td align="center" valign="middle" rowspan="1" colspan="1">22</td>
<td align="center" valign="middle" rowspan="1" colspan="1">0.854</td>
<td align="center" valign="middle" rowspan="1" colspan="1">0.202 ± 0.043</td>
<td align="center" valign="middle" rowspan="1" colspan="1">0.021 ± 0.007</td>
<td align="center" valign="middle" rowspan="1" colspan="1">0.10</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">CRD/36</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">0.007 ± 0.001</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">17</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">0.778</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">0.019 ± 0.006</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">0.005 ± 0.002</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">0.26</td>
</tr>
<tr><td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1"><bold>IR</bold>
</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">940</td>
<td align="center" valign="middle" rowspan="1" colspan="1">All/38</td>
<td align="center" valign="middle" rowspan="1" colspan="1">0.021 ± 0.003</td>
<td align="center" valign="middle" rowspan="1" colspan="1">38</td>
<td align="center" valign="middle" rowspan="1" colspan="1">1</td>
<td align="center" valign="middle" rowspan="1" colspan="1">-</td>
<td align="center" valign="middle" rowspan="1" colspan="1">-</td>
<td align="center" valign="middle" rowspan="1" colspan="1">-</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">CRD/28</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">0.016 ± 0.003</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">28</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">1</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">-</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">-</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">-</td>
</tr>
</tbody>
</table>
<table-wrap-foot><fn><p><sup>1</sup>
Only citrus isolates were considered. <sup>2</sup>
Standard error of means was calculated by using the bootstrap method implemented in the MEGA6 program. All: Total population; CRD: Only members of the clade CRD; π: Nucleotide diversity; h: Number of haplotypes; Hd: haplotype (gene) diversity; dS: frequency of synonymous substitution per site; dN: frequency of non-synonymous substitution per site.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="viruses-08-00153-t003" position="float"><object-id pub-id-type="pii">viruses-08-00153-t003_Table 3</object-id>
<label>Table 3</label>
<caption><p>Amino acids likely to be under selection in CiLV-C.</p>
</caption>
<table frame="hsides" rules="groups"><thead><tr><th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">ORF</th>
<th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">Nucleotide Substitution Model</th>
<th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">Methods</th>
<th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">Selection Pressure</th>
<th align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1" colspan="1">Amino Acid Position in the Sequence of Isolate BR_SP_SJP_01</th>
</tr>
</thead>
<tbody><tr><td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1"><bold><italic>p29</italic>
</bold>
</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">TrN</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">SLAC-FEL-REL</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">purification</td>
<td align="left" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">27, 39, 113, 156, 157, 173, 207, 211, 227, 259</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">FEL-REL</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">purification</td>
<td align="left" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">2, 7, 23, 30, 47, 49, 57, 58, 76, 87, 99, 100, 104, 116, 118, 133, 137, 140, 151, 154, 165, 171, 172, 180, 181, 190, 196, 202, 213, 214, 217, 219, 245, 254</td>
</tr>
<tr><td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1"><bold><italic>p15</italic>
</bold>
</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">HKY85</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">SLAC-FEL-REL</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">-</td>
<td align="left" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">-</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">FEL-REL</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">positive</td>
<td align="left" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">91</td>
</tr>
<tr><td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1"><bold><italic>MP</italic>
<sup>1</sup>
</bold>
</td>
<td rowspan="2" align="center" valign="middle" style="border-bottom:solid thin" colspan="1">GTR</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">SLAC-FEL-REL</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">purification</td>
<td align="left" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">71, 112, 148</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">FEL-REL</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">purification</td>
<td align="left" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">59, 74, 80, 84, 85, 92, 93, 96, 97, 98, 99, 102, 103, 111, 115, 118, 121, 136, 146</td>
</tr>
</tbody>
</table>
<table-wrap-foot><fn><p><sup>1</sup>
Fragment of the gene corresponding to amino acid stretch between the positions 55 and 150.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="viruses-08-00153-t004" position="float"><object-id pub-id-type="pii">viruses-08-00153-t004_Table 4</object-id>
<label>Table 4</label>
<caption><p>Nucleotide and deduced amino acids identities between the isolate BR_SP_SJP_01 and definitive and tentative cileviruses.</p>
</caption>
<table frame="hsides" rules="groups"><thead><tr><th rowspan="2" align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" colspan="1">BR_SP_SJP_01</th>
<th colspan="2" align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1">CiLV-C</th>
<th colspan="2" align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1">CiLV-C2 Isolate Colombia</th>
<th colspan="2" align="center" valign="middle" style="border-top:solid thin;border-bottom:solid thin" rowspan="1">CiLV-C2 Isolate Hawaii</th>
</tr>
<tr><th align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">nt</th>
<th align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">aa</th>
<th align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">nt</th>
<th align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">aa</th>
<th align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">nt</th>
<th align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">aa</th>
</tr>
</thead>
<tbody><tr><td align="center" valign="middle" rowspan="1" colspan="1"><bold>RNA1</bold>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">85.6</td>
<td align="center" valign="middle" rowspan="1" colspan="1">-</td>
<td align="center" valign="middle" rowspan="1" colspan="1">60.1</td>
<td align="center" valign="middle" rowspan="1" colspan="1">-</td>
<td align="center" valign="middle" rowspan="1" colspan="1">60.1</td>
<td align="center" valign="middle" rowspan="1" colspan="1">-</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">ORF <italic>RdRp</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">85.4</td>
<td align="center" valign="middle" rowspan="1" colspan="1">93.1</td>
<td align="center" valign="middle" rowspan="1" colspan="1">61.4</td>
<td align="center" valign="middle" rowspan="1" colspan="1">59.3</td>
<td align="center" valign="middle" rowspan="1" colspan="1">61.4</td>
<td align="center" valign="middle" rowspan="1" colspan="1">59.1</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">ORF <italic>p29</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">85.0</td>
<td align="center" valign="middle" rowspan="1" colspan="1">90.5</td>
<td align="center" valign="middle" rowspan="1" colspan="1">49.2</td>
<td align="center" valign="middle" rowspan="1" colspan="1">36.0</td>
<td align="center" valign="middle" rowspan="1" colspan="1">49.0</td>
<td align="center" valign="middle" rowspan="1" colspan="1">35.0</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1"><bold>RNA2</bold>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">88.4</td>
<td align="center" valign="middle" rowspan="1" colspan="1">-</td>
<td align="center" valign="middle" rowspan="1" colspan="1">52.6</td>
<td align="center" valign="middle" rowspan="1" colspan="1">-</td>
<td align="center" valign="middle" rowspan="1" colspan="1">52.0</td>
<td align="center" valign="middle" rowspan="1" colspan="1">-</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">ORF <italic>p15</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">99.5</td>
<td align="center" valign="middle" rowspan="1" colspan="1">100.0</td>
<td align="center" valign="middle" rowspan="1" colspan="1">44.7</td>
<td align="center" valign="middle" rowspan="1" colspan="1">20.8</td>
<td align="center" valign="middle" rowspan="1" colspan="1">45.2</td>
<td align="center" valign="middle" rowspan="1" colspan="1">24.6</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">ORF <italic>p61</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">81.8</td>
<td align="center" valign="middle" rowspan="1" colspan="1">84.0</td>
<td align="center" valign="middle" rowspan="1" colspan="1">52.0</td>
<td align="center" valign="middle" rowspan="1" colspan="1">32.0</td>
<td align="center" valign="middle" rowspan="1" colspan="1">51.2</td>
<td align="center" valign="middle" rowspan="1" colspan="1">33.1</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">ORF <italic>MP</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">86.8</td>
<td align="center" valign="middle" rowspan="1" colspan="1">91.9</td>
<td align="center" valign="middle" rowspan="1" colspan="1">56.6</td>
<td align="center" valign="middle" rowspan="1" colspan="1">51.7</td>
<td align="center" valign="middle" rowspan="1" colspan="1">54.9</td>
<td align="center" valign="middle" rowspan="1" colspan="1">51.4</td>
</tr>
<tr><td align="center" valign="middle" rowspan="1" colspan="1">ORF <italic>p24</italic>
</td>
<td align="center" valign="middle" rowspan="1" colspan="1">87.4</td>
<td align="center" valign="middle" rowspan="1" colspan="1">93.9</td>
<td align="center" valign="middle" rowspan="1" colspan="1">63.9</td>
<td align="center" valign="middle" rowspan="1" colspan="1">63.1</td>
<td align="center" valign="middle" rowspan="1" colspan="1">62.0</td>
<td align="center" valign="middle" rowspan="1" colspan="1">61.6</td>
</tr>
<tr><td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">IR</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">96.7</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">-</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">46.0</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">-</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">46.0</td>
<td align="center" valign="middle" style="border-bottom:solid thin" rowspan="1" colspan="1">-</td>
</tr>
</tbody>
</table>
</table-wrap>
</floats-group>
</pmc>
<affiliations><list><country><li>Brésil</li>
</country>
<region><li>État de São Paulo</li>
</region>
<settlement><li>São Paulo</li>
</settlement>
<orgName><li>Université de São Paulo</li>
</orgName>
</list>
<tree><noCountry><name sortKey="Breton, Michele Claire" sort="Breton, Michele Claire" uniqKey="Breton M" first="Michèle Claire" last="Breton">Michèle Claire Breton</name>
<name sortKey="Guerra Peraza, Orlene" sort="Guerra Peraza, Orlene" uniqKey="Guerra Peraza O" first="Orlene" last="Guerra-Peraza">Orlene Guerra-Peraza</name>
<name sortKey="Kitajima, Elliot Watanabe" sort="Kitajima, Elliot Watanabe" uniqKey="Kitajima E" first="Elliot Watanabe" last="Kitajima">Elliot Watanabe Kitajima</name>
<name sortKey="Machado, Marcos Antonio" sort="Machado, Marcos Antonio" uniqKey="Machado M" first="Marcos Antonio" last="Machado">Marcos Antonio Machado</name>
<name sortKey="Nunes, Maria Andreia" sort="Nunes, Maria Andreia" uniqKey="Nunes M" first="Maria Andreia" last="Nunes">Maria Andreia Nunes</name>
<name sortKey="Ramos Gonzalez, Pedro Luis" sort="Ramos Gonzalez, Pedro Luis" uniqKey="Ramos Gonzalez P" first="Pedro Luis" last="Ramos-González">Pedro Luis Ramos-González</name>
</noCountry>
<country name="Brésil"><region name="État de São Paulo"><name sortKey="Chabi Jesus, Camila" sort="Chabi Jesus, Camila" uniqKey="Chabi Jesus C" first="Camila" last="Chabi-Jesus">Camila Chabi-Jesus</name>
</region>
<name sortKey="Arena, Gabriella Dias" sort="Arena, Gabriella Dias" uniqKey="Arena G" first="Gabriella Dias" last="Arena">Gabriella Dias Arena</name>
<name sortKey="Freitas Astua, Juliana" sort="Freitas Astua, Juliana" uniqKey="Freitas Astua J" first="Juliana" last="Freitas-Astúa">Juliana Freitas-Astúa</name>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Bois/explor/OrangerV1/Data/Ncbi/Merge
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 002058 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Ncbi/Merge/biblio.hfd -nk 002058 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Wicri/Bois |area= OrangerV1 |flux= Ncbi |étape= Merge |type= RBID |clé= PMC:4926173 |texte= Phylogenetic and Molecular Variability Studies Reveal a New Genetic Clade of Citrus leprosis virus C }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Ncbi/Merge/RBID.i -Sk "pubmed:27275832" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Ncbi/Merge/biblio.hfd \ | NlmPubMed2Wicri -a OrangerV1
![]() | This area was generated with Dilib version V0.6.25. | ![]() |