Transcriptomes of Arbuscular Mycorrhizal Fungi and Litchi Host Interaction after Tree Girdling
Identifieur interne : 001F82 ( Ncbi/Merge ); précédent : 001F81; suivant : 001F83Transcriptomes of Arbuscular Mycorrhizal Fungi and Litchi Host Interaction after Tree Girdling
Auteurs : Bo Shu ; Weicai Li ; Liqin Liu ; Yongzan Wei ; Shengyou ShiSource :
- Frontiers in Microbiology [ 1664-302X ] ; 2016.
Abstract
Trunk girdling can increase carbohydrate content above the girdling site and is an important strategy for inhibiting new shoot growth to promote flowering in cultivated litchi (
Url:
DOI: 10.3389/fmicb.2016.00408
PubMed: 27065972
PubMed Central: 4811939
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000293
- to stream Pmc, to step Curation: 000292
- to stream Pmc, to step Checkpoint: 000011
Links to Exploration step
PMC:4811939Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Transcriptomes of Arbuscular Mycorrhizal Fungi and Litchi Host Interaction after Tree Girdling</title><author><name sortKey="Shu, Bo" sort="Shu, Bo" uniqKey="Shu B" first="Bo" last="Shu">Bo Shu</name></author><author><name sortKey="Li, Weicai" sort="Li, Weicai" uniqKey="Li W" first="Weicai" last="Li">Weicai Li</name></author><author><name sortKey="Liu, Liqin" sort="Liu, Liqin" uniqKey="Liu L" first="Liqin" last="Liu">Liqin Liu</name></author><author><name sortKey="Wei, Yongzan" sort="Wei, Yongzan" uniqKey="Wei Y" first="Yongzan" last="Wei">Yongzan Wei</name></author><author><name sortKey="Shi, Shengyou" sort="Shi, Shengyou" uniqKey="Shi S" first="Shengyou" last="Shi">Shengyou Shi</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27065972</idno><idno type="pmc">4811939</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4811939</idno><idno type="RBID">PMC:4811939</idno><idno type="doi">10.3389/fmicb.2016.00408</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000293</idno><idno type="wicri:Area/Pmc/Curation">000292</idno><idno type="wicri:Area/Pmc/Checkpoint">000011</idno><idno type="wicri:Area/Ncbi/Merge">001F82</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Transcriptomes of Arbuscular Mycorrhizal Fungi and Litchi Host Interaction after Tree Girdling</title><author><name sortKey="Shu, Bo" sort="Shu, Bo" uniqKey="Shu B" first="Bo" last="Shu">Bo Shu</name></author><author><name sortKey="Li, Weicai" sort="Li, Weicai" uniqKey="Li W" first="Weicai" last="Li">Weicai Li</name></author><author><name sortKey="Liu, Liqin" sort="Liu, Liqin" uniqKey="Liu L" first="Liqin" last="Liu">Liqin Liu</name></author><author><name sortKey="Wei, Yongzan" sort="Wei, Yongzan" uniqKey="Wei Y" first="Yongzan" last="Wei">Yongzan Wei</name></author><author><name sortKey="Shi, Shengyou" sort="Shi, Shengyou" uniqKey="Shi S" first="Shengyou" last="Shi">Shengyou Shi</name></author></analytic><series><title level="j">Frontiers in Microbiology</title><idno type="eISSN">1664-302X</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Trunk girdling can increase carbohydrate content above the girdling site and is an important strategy for inhibiting new shoot growth to promote flowering in cultivated litchi (<italic>Litchi chinensis</italic> Sonn.). However, girdling inhibits carbohydrate transport to the root in nearly all of the fruit development periods and consequently decreases root absorption. The mechanism through which carbohydrates regulate root development in arbuscular mycorrhiza (AM) remains largely unknown. Carbohydrate content, AM colonization, and transcriptome in the roots were analyzed to elucidate the interaction between host litchi and AM fungi when carbohydrate content decreases. Girdling decreased glucose, fructose, sucrose, quebrachitol, and starch contents in the litchi mycorrhizal roots, thereby reducing AM colonization. RNA-seq achieved approximately 60 million reads of each sample, with an average length of reads reaching 100 bp. Assembly of all the reads of the 30 samples produced 671,316 transcripts and 381,429 unigenes, with average lengths of 780 and 643 bp, respectively. Litchi (54,100 unigenes) and AM fungi unigenes (33,120 unigenes) were achieved through sequence annotation during decreased carbohydrate content. Analysis of differentially expressed genes (DEG) showed that flavonoids, alpha-linolenic acid, and linoleic acid are the main factors that regulate AM colonization in litchi. However, flavonoids may play a role in detecting the stage at which carbohydrate content decreases; alpha-linolenic acid or linoleic acid may affect AM formation under the adaptation process. Litchi trees stimulated the expression of defense-related genes and downregulated symbiosis signal-transduction genes to inhibit new AM colonization. Moreover, transcription factors of the AP2, ERF, Myb, WRKY, bHLH families, and lectin genes altered maintenance of litchi mycorrhizal roots in the post-symbiotic stage for carbohydrate starvation. Similar to those of the litchi host, the E3 ubiquitin ligase complex SCF subunit scon-3 and polyubiquitin of AM fungi were upregulated at the perceived stages. This occurrence suggested that ubiquitination plays an important role in perceiving carbohydrate decrease in AM fungi. The transcription of cytochrome b-245 and leucine-rich repeat was detected in the DEG database, implying that the transcripts were involved in AM fungal adaptation under carbohydrate starvation. The transcriptome data might suggest novel functions of unigenes in carbohydrate shortage of mycorrhizal roots.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Baier, M C" uniqKey="Baier M">M. C. Baier</name></author><author><name sortKey="Keck, M" uniqKey="Keck M">M. Keck</name></author><author><name sortKey="Godde, V" uniqKey="Godde V">V. Gödde</name></author><author><name sortKey="Niehaus, K" uniqKey="Niehaus K">K. Niehaus</name></author><author><name sortKey="Kuster, H" uniqKey="Kuster H">H. Küster</name></author><author><name sortKey="Hohnjec, N" uniqKey="Hohnjec N">N. Hohnjec</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bates, P D" uniqKey="Bates P">P. D. Bates</name></author><author><name sortKey="Fatihi, A" uniqKey="Fatihi A">A. Fatihi</name></author><author><name sortKey="Snapp, A R" uniqKey="Snapp A">A. R. Snapp</name></author><author><name sortKey="Carlsson, A S" uniqKey="Carlsson A">A. S. Carlsson</name></author><author><name sortKey="Browse, J" uniqKey="Browse J">J. Browse</name></author><author><name sortKey="Lu, C" uniqKey="Lu C">C. Lu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Becard, G" uniqKey="Becard G">G. Bécard</name></author><author><name sortKey="Douds, D D" uniqKey="Douds D">D. D. Douds</name></author><author><name sortKey="Pfeffer, P E" uniqKey="Pfeffer P">P. E. Pfeffer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Becard, G" uniqKey="Becard G">G. Bécard</name></author><author><name sortKey="Taylor, L P" uniqKey="Taylor L">L. P. Taylor</name></author><author><name sortKey="Douds, D D" uniqKey="Douds D">D. D. Douds</name></author><author><name sortKey="Pfeffer, P E" uniqKey="Pfeffer P">P. E. Pfeffer</name></author><author><name sortKey="Doner, L W" uniqKey="Doner L">L. W. Doner</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Besserer, A" uniqKey="Besserer A">A. Besserer</name></author><author><name sortKey="Becard, G" uniqKey="Becard G">G. Bécard</name></author><author><name sortKey="Jauneau, A" uniqKey="Jauneau A">A. Jauneau</name></author><author><name sortKey="Roux, C" uniqKey="Roux C">C. Roux</name></author><author><name sortKey="Sejalon Delmas, N" uniqKey="Sejalon Delmas N">N. Séjalon-Delmas</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bonneau, L" uniqKey="Bonneau L">L. Bonneau</name></author><author><name sortKey="Huguet, S" uniqKey="Huguet S">S. Huguet</name></author><author><name sortKey="Wipf, D" uniqKey="Wipf D">D. Wipf</name></author><author><name sortKey="Pauly, N" uniqKey="Pauly N">N. Pauly</name></author><author><name sortKey="Truong, H N" uniqKey="Truong H">H. N. Truong</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bucher, M" uniqKey="Bucher M">M. Bucher</name></author><author><name sortKey="Hause, B" uniqKey="Hause B">B. Hause</name></author><author><name sortKey="Krajinski, F" uniqKey="Krajinski F">F. Krajinski</name></author><author><name sortKey="Kuster, H" uniqKey="Kuster H">H. Küster</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chinchilla, D" uniqKey="Chinchilla D">D. Chinchilla</name></author><author><name sortKey="Bauer, Z" uniqKey="Bauer Z">Z. Bauer</name></author><author><name sortKey="Regenass, M" uniqKey="Regenass M">M. Regenass</name></author><author><name sortKey="Boller, T" uniqKey="Boller T">T. Boller</name></author><author><name sortKey="Felix, G" uniqKey="Felix G">G. Felix</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey=" Resnar, B" uniqKey=" Resnar B">B. Črešnar</name></author><author><name sortKey="Petri, S" uniqKey="Petri S">S. Petrič</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="De Hoff, P L" uniqKey="De Hoff P">P. L. De Hoff</name></author><author><name sortKey="Brill, L M" uniqKey="Brill L">L. M. Brill</name></author><author><name sortKey="Hirsch, A M" uniqKey="Hirsch A">A. M. Hirsch</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Den Herder, G" uniqKey="Den Herder G">G. Den Herder</name></author><author><name sortKey="Yoshida, S" uniqKey="Yoshida S">S. Yoshida</name></author><author><name sortKey="Antolin Llovera, M" uniqKey="Antolin Llovera M">M. Antolín-Llovera</name></author><author><name sortKey="Ried, M K" uniqKey="Ried M">M. K. Ried</name></author><author><name sortKey="Parniske, M" uniqKey="Parniske M">M. Parniske</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fellbaum, C R" uniqKey="Fellbaum C">C. R. Fellbaum</name></author><author><name sortKey="Gachomo, E W" uniqKey="Gachomo E">E. W. Gachomo</name></author><author><name sortKey="Beesetty, Y" uniqKey="Beesetty Y">Y. Beesetty</name></author><author><name sortKey="Choudharib, S" uniqKey="Choudharib S">S. Choudharib</name></author><author><name sortKey="Strahanc, G D" uniqKey="Strahanc G">G. D. Strahanc</name></author><author><name sortKey="Pfefferc, P E" uniqKey="Pfefferc P">P. E. Pfefferc</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fiorilli, V" uniqKey="Fiorilli V">V. Fiorilli</name></author><author><name sortKey="Vallino, M" uniqKey="Vallino M">M. Vallino</name></author><author><name sortKey="Biselli, C" uniqKey="Biselli C">C. Biselli</name></author><author><name sortKey="Faccio, A" uniqKey="Faccio A">A. Faccio</name></author><author><name sortKey="Bagnaresi, P" uniqKey="Bagnaresi P">P. Bagnaresi</name></author><author><name sortKey="Bonfante, P" uniqKey="Bonfante P">P. Bonfante</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gallou, A" uniqKey="Gallou A">A. Gallou</name></author><author><name sortKey="Declerck, S" uniqKey="Declerck S">S. Declerck</name></author><author><name sortKey="Cranenbrouck, S" uniqKey="Cranenbrouck S">S. Cranenbrouck</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Garber, M" uniqKey="Garber M">M. Garber</name></author><author><name sortKey="Grabherr, M G" uniqKey="Grabherr M">M. G. Grabherr</name></author><author><name sortKey="Guttman, M" uniqKey="Guttman M">M. Guttman</name></author><author><name sortKey="Trapnell, C" uniqKey="Trapnell C">C. Trapnell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gaude, N" uniqKey="Gaude N">N. Gaude</name></author><author><name sortKey="Bortfeld, S" uniqKey="Bortfeld S">S. Bortfeld</name></author><author><name sortKey="Duensing, N" uniqKey="Duensing N">N. Duensing</name></author><author><name sortKey="Lohse, M" uniqKey="Lohse M">M. Lohse</name></author><author><name sortKey="Krajinski, F" uniqKey="Krajinski F">F. Krajinski</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Genre, A" uniqKey="Genre A">A. Genre</name></author><author><name sortKey="Chabaud, M" uniqKey="Chabaud M">M. Chabaud</name></author><author><name sortKey="Balzergue, C" uniqKey="Balzergue C">C. Balzergue</name></author><author><name sortKey="Puech Pages, V" uniqKey="Puech Pages V">V. Puech-Pagès</name></author><author><name sortKey="Novero, M" uniqKey="Novero M">M. Novero</name></author><author><name sortKey="Rey, T" uniqKey="Rey T">T. Rey</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="G Mez G Mez, L" uniqKey="G Mez G Mez L">L. Gómez-Gómez</name></author><author><name sortKey="Boller, T" uniqKey="Boller T">T. Boller</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Grabherr, M G" uniqKey="Grabherr M">M. G. Grabherr</name></author><author><name sortKey="Haas, B J" uniqKey="Haas B">B. J. Haas</name></author><author><name sortKey="Yassour, M" uniqKey="Yassour M">M. Yassour</name></author><author><name sortKey="Levin, J Z" uniqKey="Levin J">J. Z. Levin</name></author><author><name sortKey="Thompson, D A" uniqKey="Thompson D">D. A. Thompson</name></author><author><name sortKey="Amit, I" uniqKey="Amit I">I. Amit</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Handa, Y" uniqKey="Handa Y">Y. Handa</name></author><author><name sortKey="Nishide, H" uniqKey="Nishide H">H. Nishide</name></author><author><name sortKey="Takeda, N" uniqKey="Takeda N">N. Takeda</name></author><author><name sortKey="Suzuki, Y" uniqKey="Suzuki Y">Y. Suzuki</name></author><author><name sortKey="Kawaguchi, M" uniqKey="Kawaguchi M">M. Kawaguchi</name></author><author><name sortKey="Saito, K" uniqKey="Saito K">K. Saito</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hayman, D S" uniqKey="Hayman D">D. S. Hayman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Helber, N" uniqKey="Helber N">N. Helber</name></author><author><name sortKey="Wippel, K" uniqKey="Wippel K">K. Wippel</name></author><author><name sortKey="Sauer, N" uniqKey="Sauer N">N. Sauer</name></author><author><name sortKey="Schaarschmidt, S" uniqKey="Schaarschmidt S">S. Schaarschmidt</name></author><author><name sortKey="Hause, B" uniqKey="Hause B">B. Hause</name></author><author><name sortKey="Requena, N" uniqKey="Requena N">N. Requena</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hogekamp, C" uniqKey="Hogekamp C">C. Hogekamp</name></author><author><name sortKey="Arndt, D" uniqKey="Arndt D">D. Arndt</name></author><author><name sortKey="Pereira, P" uniqKey="Pereira P">P. Pereira</name></author><author><name sortKey="Becker, J D" uniqKey="Becker J">J. D. Becker</name></author><author><name sortKey="Hohnjec, N" uniqKey="Hohnjec N">N. Hohnjec</name></author><author><name sortKey="Kuster, H" uniqKey="Kuster H">H. Küster</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hogekamp, C" uniqKey="Hogekamp C">C. Hogekamp</name></author><author><name sortKey="Kuster, H" uniqKey="Kuster H">H. Küster</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Huang, X M" uniqKey="Huang X">X. M. Huang</name></author><author><name sortKey="Wang, H C" uniqKey="Wang H">H. C. Wang</name></author><author><name sortKey="Yuan, W Q" uniqKey="Yuan W">W. Q. Yuan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kiers, E T" uniqKey="Kiers E">E. T. Kiers</name></author><author><name sortKey="Duhamel, M" uniqKey="Duhamel M">M. Duhamel</name></author><author><name sortKey="Beesetty, Y" uniqKey="Beesetty Y">Y. Beesetty</name></author><author><name sortKey="Mensah, J A" uniqKey="Mensah J">J. A. Mensah</name></author><author><name sortKey="Franken, O" uniqKey="Franken O">O. Franken</name></author><author><name sortKey="Verbruggen, E" uniqKey="Verbruggen E">E. Verbruggen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kobae, Y" uniqKey="Kobae Y">Y. Kobae</name></author><author><name sortKey="Gutjahr, C" uniqKey="Gutjahr C">C. Gutjahr</name></author><author><name sortKey="Paszkowski, U" uniqKey="Paszkowski U">U. Paszkowski</name></author><author><name sortKey="Kojima, T" uniqKey="Kojima T">T. Kojima</name></author><author><name sortKey="Fujiwara, T" uniqKey="Fujiwara T">T. Fujiwara</name></author><author><name sortKey="Hata, S" uniqKey="Hata S">S. Hata</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lee, S W" uniqKey="Lee S">S. W. Lee</name></author><author><name sortKey="Han, S W" uniqKey="Han S">S. W. Han</name></author><author><name sortKey="Sririyanum, M" uniqKey="Sririyanum M">M. Sririyanum</name></author><author><name sortKey="Park, C J" uniqKey="Park C">C. J. Park</name></author><author><name sortKey="Seo, Y S" uniqKey="Seo Y">Y. S. Seo</name></author><author><name sortKey="Ronald, P C" uniqKey="Ronald P">P. C. Ronald</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Li, B" uniqKey="Li B">B. Li</name></author><author><name sortKey="Dewey, C N" uniqKey="Dewey C">C. N. Dewey</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Maillet, F" uniqKey="Maillet F">F. Maillet</name></author><author><name sortKey="Poinsot, V" uniqKey="Poinsot V">V. Poinsot</name></author><author><name sortKey="Andre, O" uniqKey="Andre O">O. André</name></author><author><name sortKey="Puech Pages, V" uniqKey="Puech Pages V">V. Puech-Pagès</name></author><author><name sortKey="Haouy, A" uniqKey="Haouy A">A. Haouy</name></author><author><name sortKey="Gueunier, M" uniqKey="Gueunier M">M. Gueunier</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mbengue, M" uniqKey="Mbengue M">M. Mbengue</name></author><author><name sortKey="Camut, S" uniqKey="Camut S">S. Camut</name></author><author><name sortKey="De Carvalho Niebel, F" uniqKey="De Carvalho Niebel F">F. de Carvalho-Niebel</name></author><author><name sortKey="Deslandes, L" uniqKey="Deslandes L">L. Deslandes</name></author><author><name sortKey="Froidure, S" uniqKey="Froidure S">S. Froidure</name></author><author><name sortKey="Klaus Heisen, D" uniqKey="Klaus Heisen D">D. Klaus-Heisen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mcgonigle, T P" uniqKey="Mcgonigle T">T. P. McGonigle</name></author><author><name sortKey="Miller, M H" uniqKey="Miller M">M. H. Miller</name></author><author><name sortKey="Evans, D G" uniqKey="Evans D">D. G. Evans</name></author><author><name sortKey="Fairchild, G L" uniqKey="Fairchild G">G. L. Fairchild</name></author><author><name sortKey="Swan, J A" uniqKey="Swan J">J. A. Swan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Miyata, K" uniqKey="Miyata K">K. Miyata</name></author><author><name sortKey="Kozaki, T" uniqKey="Kozaki T">T. Kozaki</name></author><author><name sortKey="Kouzai, Y" uniqKey="Kouzai Y">Y. Kouzai</name></author><author><name sortKey="Ozawa, K" uniqKey="Ozawa K">K. Ozawa</name></author><author><name sortKey="Ishii, K" uniqKey="Ishii K">K. Ishii</name></author><author><name sortKey="Asamizu, E" uniqKey="Asamizu E">E. Asamizu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Moktali, V" uniqKey="Moktali V">V. Moktali</name></author><author><name sortKey="Park, J" uniqKey="Park J">J. Park</name></author><author><name sortKey="Fedorova Abrams, N" uniqKey="Fedorova Abrams N">N. Fedorova-Abrams</name></author><author><name sortKey="Park, B" uniqKey="Park B">B. Park</name></author><author><name sortKey="Choi, J" uniqKey="Choi J">J. Choi</name></author><author><name sortKey="Lee, Y H" uniqKey="Lee Y">Y. H. Lee</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nagahashi, G" uniqKey="Nagahashi G">G. Nagahashi</name></author><author><name sortKey="Douds, D D" uniqKey="Douds D">D. D. Douds</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Park, J" uniqKey="Park J">J. Park</name></author><author><name sortKey="Lee, S" uniqKey="Lee S">S. Lee</name></author><author><name sortKey="Choi, J" uniqKey="Choi J">J. Choi</name></author><author><name sortKey="Ahn, K" uniqKey="Ahn K">K. Ahn</name></author><author><name sortKey="Park, B" uniqKey="Park B">B. Park</name></author><author><name sortKey="Park, J" uniqKey="Park J">J. Park</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Parniske, M" uniqKey="Parniske M">M. Parniske</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Phillips, J M" uniqKey="Phillips J">J. M. Phillips</name></author><author><name sortKey="Hayman, D S" uniqKey="Hayman D">D. S. Hayman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Robatzek, S" uniqKey="Robatzek S">S. Robatzek</name></author><author><name sortKey="Chinchilla, D" uniqKey="Chinchilla D">D. Chinchilla</name></author><author><name sortKey="Boller, T" uniqKey="Boller T">T. Boller</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ruzicka, D R" uniqKey="Ruzicka D">D. R. Ruzicka</name></author><author><name sortKey="Chamala, S" uniqKey="Chamala S">S. Chamala</name></author><author><name sortKey="Barriosmasias, F H" uniqKey="Barriosmasias F">F. H. Barriosmasias</name></author><author><name sortKey="Martin, F" uniqKey="Martin F">F. Martin</name></author><author><name sortKey="Smith, S" uniqKey="Smith S">S. Smith</name></author><author><name sortKey="Jackson, L E" uniqKey="Jackson L">L. E. Jackson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ruzicka, D R" uniqKey="Ruzicka D">D. R. Ruzicka</name></author><author><name sortKey="Hausmann, N T" uniqKey="Hausmann N">N. T. Hausmann</name></author><author><name sortKey="Barrios Masias, F H" uniqKey="Barrios Masias F">F. H. Barrios-Masias</name></author><author><name sortKey="Jackson, L E" uniqKey="Jackson L">L. E. Jackson</name></author><author><name sortKey="Schachtman, D P" uniqKey="Schachtman D">D. P. Schachtman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schaarschmidt, S" uniqKey="Schaarschmidt S">S. Schaarschmidt</name></author><author><name sortKey="Gonzalez, M C" uniqKey="Gonzalez M">M. C. González</name></author><author><name sortKey="Roitsch, T" uniqKey="Roitsch T">T. Roitsch</name></author><author><name sortKey="Strack, D" uniqKey="Strack D">D. Strack</name></author><author><name sortKey="Sonnewald, U" uniqKey="Sonnewald U">U. Sonnewald</name></author><author><name sortKey="Hause, B" uniqKey="Hause B">B. Hause</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Smith, S E" uniqKey="Smith S">S. E. Smith</name></author><author><name sortKey="Read, D J" uniqKey="Read D">D. J. Read</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Song, W Y" uniqKey="Song W">W. Y. Song</name></author><author><name sortKey="Wang, G L" uniqKey="Wang G">G. L. Wang</name></author><author><name sortKey="Chen, L L" uniqKey="Chen L">L. L. Chen</name></author><author><name sortKey="Kim, H S" uniqKey="Kim H">H. S. Kim</name></author><author><name sortKey="Pi, L Y" uniqKey="Pi L">L. Y. Pi</name></author><author><name sortKey="Holsten, T" uniqKey="Holsten T">T. Holsten</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sun, J" uniqKey="Sun J">J. Sun</name></author><author><name sortKey="Miller, J B" uniqKey="Miller J">J. B. Miller</name></author><author><name sortKey="Granqvist, E" uniqKey="Granqvist E">E. Granqvist</name></author><author><name sortKey="Wiley Kalil, A" uniqKey="Wiley Kalil A">A. Wiley-Kalil</name></author><author><name sortKey="Gobbato, E" uniqKey="Gobbato E">E. Gobbato</name></author><author><name sortKey="Maillet, F" uniqKey="Maillet F">F. Maillet</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tisserant, E" uniqKey="Tisserant E">E. Tisserant</name></author><author><name sortKey="Malbreil, M" uniqKey="Malbreil M">M. Malbreil</name></author><author><name sortKey="Kuo, A" uniqKey="Kuo A">A. Kuo</name></author><author><name sortKey="Kohler, A" uniqKey="Kohler A">A. Kohler</name></author><author><name sortKey="Symeonidi, A" uniqKey="Symeonidi A">A. Symeonidi</name></author><author><name sortKey="Balestrini, R" uniqKey="Balestrini R">R. Balestrini</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tromas, A" uniqKey="Tromas A">A. Tromas</name></author><author><name sortKey="Parizot, B" uniqKey="Parizot B">B. Parizot</name></author><author><name sortKey="Diagne, N" uniqKey="Diagne N">N. Diagne</name></author><author><name sortKey="Champion, A" uniqKey="Champion A">A. Champion</name></author><author><name sortKey="Hocher, V" uniqKey="Hocher V">V. Hocher</name></author><author><name sortKey="Cissoko, M" uniqKey="Cissoko M">M. Cissoko</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tromp, J" uniqKey="Tromp J">J. Tromp</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Van Den Brink, H M" uniqKey="Van Den Brink H">H. M. van den Brink</name></author><author><name sortKey="Van Gorcom, R F M" uniqKey="Van Gorcom R">R. F. M. van Gorcom</name></author><author><name sortKey="Van Den Hondel, C A M J J" uniqKey="Van Den Hondel C">C. A. M. J. J. van den Hondel</name></author><author><name sortKey="Punt, P J" uniqKey="Punt P">P. J. Punt</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vierheilig, H" uniqKey="Vierheilig H">H. Vierheilig</name></author><author><name sortKey="Bago, B" uniqKey="Bago B">B. Bago</name></author><author><name sortKey="Lerat, S" uniqKey="Lerat S">S. Lerat</name></author><author><name sortKey="Piche, Y" uniqKey="Piche Y">Y. Piché</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wang, H C" uniqKey="Wang H">H. C. Wang</name></author><author><name sortKey="Wu, Z H" uniqKey="Wu Z">Z. H. Wu</name></author><author><name sortKey="Huang, X M" uniqKey="Huang X">X. M. Huang</name></author><author><name sortKey="Hu, G B" uniqKey="Hu G">G. B. Hu</name></author><author><name sortKey="Chen, H B" uniqKey="Chen H">H. B. Chen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wang, C" uniqKey="Wang C">C. Wang</name></author><author><name sortKey="Gong, B" uniqKey="Gong B">B. Gong</name></author><author><name sortKey="Bushel, P R" uniqKey="Bushel P">P. R. Bushel</name></author><author><name sortKey="Thierry Mieg, J" uniqKey="Thierry Mieg J">J. Thierry-Mieg</name></author><author><name sortKey="Thierry Mieg, D" uniqKey="Thierry Mieg D">D. Thierry-Mieg</name></author><author><name sortKey="Xu, J" uniqKey="Xu J">J. Xu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wang, T D" uniqKey="Wang T">T. D. Wang</name></author><author><name sortKey="Zhang, H F" uniqKey="Zhang H">H. F. Zhang</name></author><author><name sortKey="Wu, Z C" uniqKey="Wu Z">Z. C. Wu</name></author><author><name sortKey="Li, J G" uniqKey="Li J">J. G. Li</name></author><author><name sortKey="Huang, X M" uniqKey="Huang X">X. M. Huang</name></author><author><name sortKey="Wang, H C" uniqKey="Wang H">H. C. Wang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wewer, V" uniqKey="Wewer V">V. Wewer</name></author><author><name sortKey="Brands, M" uniqKey="Brands M">M. Brands</name></author><author><name sortKey="Dormann, P" uniqKey="Dormann P">P. Dörmann</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Xie, C" uniqKey="Xie C">C. Xie</name></author><author><name sortKey="Mao, X" uniqKey="Mao X">X. Mao</name></author><author><name sortKey="Huang, J" uniqKey="Huang J">J. Huang</name></author><author><name sortKey="Ding, Y" uniqKey="Ding Y">Y. Ding</name></author><author><name sortKey="Wu, J" uniqKey="Wu J">J. Wu</name></author><author><name sortKey="Dong, S" uniqKey="Dong S">S. Dong</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Young, M D" uniqKey="Young M">M. D. Young</name></author><author><name sortKey="Wakefield, M J" uniqKey="Wakefield M">M. J. Wakefield</name></author><author><name sortKey="Smyth, G K" uniqKey="Smyth G">G. K. Smyth</name></author><author><name sortKey="Oshlack, A" uniqKey="Oshlack A">A. Oshlack</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yuan, R C" uniqKey="Yuan R">R. C. Yuan</name></author><author><name sortKey="Huang, H B" uniqKey="Huang H">H. B. Huang</name></author></analytic></biblStruct></listBibl></div1></back></TEI><pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Front Microbiol</journal-id><journal-id journal-id-type="iso-abbrev">Front Microbiol</journal-id><journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id><journal-title-group><journal-title>Frontiers in Microbiology</journal-title></journal-title-group><issn pub-type="epub">1664-302X</issn><publisher><publisher-name>Frontiers Media S.A.</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">27065972</article-id><article-id pub-id-type="pmc">4811939</article-id><article-id pub-id-type="doi">10.3389/fmicb.2016.00408</article-id><article-categories><subj-group subj-group-type="heading"><subject>Microbiology</subject><subj-group><subject>Original Research</subject></subj-group></subj-group></article-categories><title-group><article-title>Transcriptomes of Arbuscular Mycorrhizal Fungi and Litchi Host Interaction after Tree Girdling</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Shu</surname><given-names>Bo</given-names></name><uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/308851/overview"></uri></contrib><contrib contrib-type="author"><name><surname>Li</surname><given-names>Weicai</given-names></name></contrib><contrib contrib-type="author"><name><surname>Liu</surname><given-names>Liqin</given-names></name></contrib><contrib contrib-type="author"><name><surname>Wei</surname><given-names>Yongzan</given-names></name><uri xlink:type="simple" xlink:href="http://loop.frontiersin.org/people/301345/overview"></uri></contrib><contrib contrib-type="author"><name><surname>Shi</surname><given-names>Shengyou</given-names></name><xref ref-type="author-notes" rid="fn001"><sup>*</sup></xref></contrib></contrib-group><aff><institution>Key Laboratory of Tropical Fruit Biology, Ministry of Agriculture, South Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Science</institution><country>Zhanjiang, China</country></aff><author-notes><fn fn-type="edited-by"><p>Edited by: <italic>Pietro Daniele Spanu, Imperial College London, UK</italic></p></fn><fn fn-type="edited-by"><p>Reviewed by: <italic>Raffaella Balestrini, Consiglio Nazionale delle Ricerche, Italy; Biswapriya Biswavas Misra, University of Florida, USA</italic></p></fn><corresp id="fn001">*Correspondence: <italic>Shengyou Shi, <email xlink:type="simple">ssy7299@163.com</email></italic></corresp><fn fn-type="other" id="fn002"><p>This article was submitted to Plant Biotic Interactions, a section of the journal Frontiers in Microbiology</p></fn></author-notes><pub-date pub-type="epub"><day>30</day><month>3</month><year>2016</year></pub-date><pub-date pub-type="collection"><year>2016</year></pub-date><volume>7</volume><elocation-id>408</elocation-id><history><date date-type="received"><day>13</day><month>1</month><year>2016</year></date><date date-type="accepted"><day>14</day><month>3</month><year>2016</year></date></history><permissions><copyright-statement>Copyright © 2016 Shu, Li, Liu, Wei and Shi.</copyright-statement><copyright-year>2016</copyright-year><copyright-holder>Shu, Li, Liu, Wei and Shi</copyright-holder><license xlink:href="http://creativecommons.org/licenses/by/4.0/"><license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</license-p></license></permissions><abstract><p>Trunk girdling can increase carbohydrate content above the girdling site and is an important strategy for inhibiting new shoot growth to promote flowering in cultivated litchi (<italic>Litchi chinensis</italic> Sonn.). However, girdling inhibits carbohydrate transport to the root in nearly all of the fruit development periods and consequently decreases root absorption. The mechanism through which carbohydrates regulate root development in arbuscular mycorrhiza (AM) remains largely unknown. Carbohydrate content, AM colonization, and transcriptome in the roots were analyzed to elucidate the interaction between host litchi and AM fungi when carbohydrate content decreases. Girdling decreased glucose, fructose, sucrose, quebrachitol, and starch contents in the litchi mycorrhizal roots, thereby reducing AM colonization. RNA-seq achieved approximately 60 million reads of each sample, with an average length of reads reaching 100 bp. Assembly of all the reads of the 30 samples produced 671,316 transcripts and 381,429 unigenes, with average lengths of 780 and 643 bp, respectively. Litchi (54,100 unigenes) and AM fungi unigenes (33,120 unigenes) were achieved through sequence annotation during decreased carbohydrate content. Analysis of differentially expressed genes (DEG) showed that flavonoids, alpha-linolenic acid, and linoleic acid are the main factors that regulate AM colonization in litchi. However, flavonoids may play a role in detecting the stage at which carbohydrate content decreases; alpha-linolenic acid or linoleic acid may affect AM formation under the adaptation process. Litchi trees stimulated the expression of defense-related genes and downregulated symbiosis signal-transduction genes to inhibit new AM colonization. Moreover, transcription factors of the AP2, ERF, Myb, WRKY, bHLH families, and lectin genes altered maintenance of litchi mycorrhizal roots in the post-symbiotic stage for carbohydrate starvation. Similar to those of the litchi host, the E3 ubiquitin ligase complex SCF subunit scon-3 and polyubiquitin of AM fungi were upregulated at the perceived stages. This occurrence suggested that ubiquitination plays an important role in perceiving carbohydrate decrease in AM fungi. The transcription of cytochrome b-245 and leucine-rich repeat was detected in the DEG database, implying that the transcripts were involved in AM fungal adaptation under carbohydrate starvation. The transcriptome data might suggest novel functions of unigenes in carbohydrate shortage of mycorrhizal roots.</p></abstract><kwd-group><kwd>litchi</kwd><kwd>carbohydrates</kwd><kwd>arbuscular mycorrhizal colonization</kwd><kwd>RNA-seq</kwd><kwd>transcripts</kwd></kwd-group><counts><fig-count count="6"></fig-count><table-count count="2"></table-count><equation-count count="0"></equation-count><ref-count count="57"></ref-count><page-count count="14"></page-count><word-count count="0"></word-count></counts></article-meta></front></pmc><affiliations><list></list><tree><noCountry><name sortKey="Li, Weicai" sort="Li, Weicai" uniqKey="Li W" first="Weicai" last="Li">Weicai Li</name><name sortKey="Liu, Liqin" sort="Liu, Liqin" uniqKey="Liu L" first="Liqin" last="Liu">Liqin Liu</name><name sortKey="Shi, Shengyou" sort="Shi, Shengyou" uniqKey="Shi S" first="Shengyou" last="Shi">Shengyou Shi</name><name sortKey="Shu, Bo" sort="Shu, Bo" uniqKey="Shu B" first="Bo" last="Shu">Bo Shu</name><name sortKey="Wei, Yongzan" sort="Wei, Yongzan" uniqKey="Wei Y" first="Yongzan" last="Wei">Yongzan Wei</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Bois/explor/OrangerV1/Data/Ncbi/Merge
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001F82 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Ncbi/Merge/biblio.hfd -nk 001F82 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Bois
|area= OrangerV1
|flux= Ncbi
|étape= Merge
|type= RBID
|clé= PMC:4811939
|texte= Transcriptomes of Arbuscular Mycorrhizal Fungi and Litchi Host Interaction after Tree Girdling
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Ncbi/Merge/RBID.i -Sk "pubmed:27065972" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Ncbi/Merge/biblio.hfd \
| NlmPubMed2Wicri -a OrangerV1
| This area was generated with Dilib version V0.6.25. |  |