Structural Diversity of a Novel LTR Retrotransposon, RTPOSON, in the Genus Oryza
Identifieur interne : 001E84 ( Ncbi/Merge ); précédent : 001E83; suivant : 001E85Structural Diversity of a Novel LTR Retrotransposon, RTPOSON, in the Genus Oryza
Auteurs : Yu-Chia Hsu [Taïwan] ; Chang-Sheng Wang [Taïwan] ; Yann-Rong Lin [Taïwan] ; Yong-Pei Wu [Taïwan]Source :
- Evolutionary Bioinformatics Online [ 1176-9343 ] ; 2016.
Abstract
Retrotransposons with long terminal repeats (LTRs) are the most abundant transposable elements in plant genomes. A novel LTR retrotransposon named
Url:
DOI: 10.4137/EBO.S35158
PubMed: 26819544
PubMed Central: 4718150
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000291
- to stream Pmc, to step Curation: 000290
- to stream Pmc, to step Checkpoint: 000035
Links to Exploration step
PMC:4718150Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Structural Diversity of a Novel LTR Retrotransposon, <italic>RTPOSON</italic>, in the Genus <italic>Oryza</italic></title><author><name sortKey="Hsu, Yu Chia" sort="Hsu, Yu Chia" uniqKey="Hsu Y" first="Yu-Chia" last="Hsu">Yu-Chia Hsu</name><affiliation wicri:level="1"><nlm:aff id="af1-ebo-12-2016-029">Department of Agronomy, Chiayi Agricultural Experiment Station, Taiwan Agricultural Research Institute, Chiayi, Taiwan.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Taïwan</country><wicri:regionArea>Department of Agronomy, Chiayi Agricultural Experiment Station, Taiwan Agricultural Research Institute, Chiayi</wicri:regionArea><wicri:noRegion>Chiayi</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Chang Sheng" sort="Wang, Chang Sheng" uniqKey="Wang C" first="Chang-Sheng" last="Wang">Chang-Sheng Wang</name><affiliation wicri:level="1"><nlm:aff id="af2-ebo-12-2016-029">Department of Agronomy, National Chung Hsing University, Taichung, Taiwan.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Taïwan</country><wicri:regionArea>Department of Agronomy, National Chung Hsing University, Taichung</wicri:regionArea><wicri:noRegion>Taichung</wicri:noRegion></affiliation></author><author><name sortKey="Lin, Yann Rong" sort="Lin, Yann Rong" uniqKey="Lin Y" first="Yann-Rong" last="Lin">Yann-Rong Lin</name><affiliation wicri:level="1"><nlm:aff id="af3-ebo-12-2016-029">Department of Agronomy, National Taiwan University, Taipei, Taiwan.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Taïwan</country><wicri:regionArea>Department of Agronomy, National Taiwan University, Taipei</wicri:regionArea><wicri:noRegion>Taipei</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Yong Pei" sort="Wu, Yong Pei" uniqKey="Wu Y" first="Yong-Pei" last="Wu">Yong-Pei Wu</name><affiliation wicri:level="1"><nlm:aff id="af1-ebo-12-2016-029">Department of Agronomy, Chiayi Agricultural Experiment Station, Taiwan Agricultural Research Institute, Chiayi, Taiwan.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Taïwan</country><wicri:regionArea>Department of Agronomy, Chiayi Agricultural Experiment Station, Taiwan Agricultural Research Institute, Chiayi</wicri:regionArea><wicri:noRegion>Chiayi</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26819544</idno><idno type="pmc">4718150</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4718150</idno><idno type="RBID">PMC:4718150</idno><idno type="doi">10.4137/EBO.S35158</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000291</idno><idno type="wicri:Area/Pmc/Curation">000290</idno><idno type="wicri:Area/Pmc/Checkpoint">000035</idno><idno type="wicri:Area/Ncbi/Merge">001E84</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Structural Diversity of a Novel LTR Retrotransposon, <italic>RTPOSON</italic>, in the Genus <italic>Oryza</italic></title><author><name sortKey="Hsu, Yu Chia" sort="Hsu, Yu Chia" uniqKey="Hsu Y" first="Yu-Chia" last="Hsu">Yu-Chia Hsu</name><affiliation wicri:level="1"><nlm:aff id="af1-ebo-12-2016-029">Department of Agronomy, Chiayi Agricultural Experiment Station, Taiwan Agricultural Research Institute, Chiayi, Taiwan.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Taïwan</country><wicri:regionArea>Department of Agronomy, Chiayi Agricultural Experiment Station, Taiwan Agricultural Research Institute, Chiayi</wicri:regionArea><wicri:noRegion>Chiayi</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Chang Sheng" sort="Wang, Chang Sheng" uniqKey="Wang C" first="Chang-Sheng" last="Wang">Chang-Sheng Wang</name><affiliation wicri:level="1"><nlm:aff id="af2-ebo-12-2016-029">Department of Agronomy, National Chung Hsing University, Taichung, Taiwan.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Taïwan</country><wicri:regionArea>Department of Agronomy, National Chung Hsing University, Taichung</wicri:regionArea><wicri:noRegion>Taichung</wicri:noRegion></affiliation></author><author><name sortKey="Lin, Yann Rong" sort="Lin, Yann Rong" uniqKey="Lin Y" first="Yann-Rong" last="Lin">Yann-Rong Lin</name><affiliation wicri:level="1"><nlm:aff id="af3-ebo-12-2016-029">Department of Agronomy, National Taiwan University, Taipei, Taiwan.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Taïwan</country><wicri:regionArea>Department of Agronomy, National Taiwan University, Taipei</wicri:regionArea><wicri:noRegion>Taipei</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Yong Pei" sort="Wu, Yong Pei" uniqKey="Wu Y" first="Yong-Pei" last="Wu">Yong-Pei Wu</name><affiliation wicri:level="1"><nlm:aff id="af1-ebo-12-2016-029">Department of Agronomy, Chiayi Agricultural Experiment Station, Taiwan Agricultural Research Institute, Chiayi, Taiwan.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Taïwan</country><wicri:regionArea>Department of Agronomy, Chiayi Agricultural Experiment Station, Taiwan Agricultural Research Institute, Chiayi</wicri:regionArea><wicri:noRegion>Chiayi</wicri:noRegion></affiliation></author></analytic><series><title level="j">Evolutionary Bioinformatics Online</title><idno type="eISSN">1176-9343</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Retrotransposons with long terminal repeats (LTRs) are the most abundant transposable elements in plant genomes. A novel LTR retrotransposon named <italic>RTPOSON</italic> primarily occurs in the genus <italic>Oryza</italic> and in several species of the Poaceae family. <italic>RTPOSON</italic> has been identified in the <italic>Ty1-copia</italic> group of retrotransposons because two of its open reading frames encode an uncharacterized protein and UBN2_2 and zinc knuckle, respectively. More than 700 <italic>RTPOSONs</italic> were identified in <italic>Oryza</italic> genomes; 127 <italic>RTPOSONs</italic> with LTRs and <italic>gag-pol</italic> elements were classified into three subgroups. The subgroup <italic>RTPOSON_sub3</italic> had the smallest DNA size and 97% (32/33) of <italic>RTPOSON</italic> elements from <italic>Oryza punctata</italic> are classified in this group. The insertion time of these <italic>RTPOSONs</italic> varied and their proliferation occurred within the last 8 Mya, with two bursting periods within the last 1.5–5.0 Mya. A total of 37 different orthologous insertions of <italic>RTPOSONs</italic>, with different nested transposable elements and gene fragments, were identified by comparing the genomes of ssp. <italic>japonica</italic> cv. Nipponbare and ssp. <italic>indica</italic> cv. 93–11. A part of intact <italic>RTPOSON</italic> elements was evolved independently after the divergence of <italic>indica</italic> and <italic>japonica</italic>. In addition, intact <italic>RTPOSONs</italic> and homologous fragments were preferentially retained or integrated in genic regions. This novel LTR retrotransposon, <italic>RTPOSON</italic>, might have an impact on genome evolution, genic innovation, and genetic variation.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Rossi, M" uniqKey="Rossi M">M Rossi</name></author><author><name sortKey="Araujo, Pg" uniqKey="Araujo P">PG Araujo</name></author><author><name sortKey="Van Sluys, Ma" uniqKey="Van Sluys M">MA Van Sluys</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jiang, N" uniqKey="Jiang N">N Jiang</name></author><author><name sortKey="Feschotte, C" uniqKey="Feschotte C">C Feschotte</name></author><author><name sortKey="Zhang, X" uniqKey="Zhang X">X Zhang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yin, H" uniqKey="Yin H">H Yin</name></author><author><name sortKey="Liu, J" uniqKey="Liu J">J Liu</name></author><author><name sortKey="Xu, Y" uniqKey="Xu Y">Y Xu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wong, Lh" uniqKey="Wong L">LH Wong</name></author><author><name sortKey="Choo, Kh" uniqKey="Choo K">KH Choo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Feuerbach, F" uniqKey="Feuerbach F">F Feuerbach</name></author><author><name sortKey="Drouaud, J" uniqKey="Drouaud J">J Drouaud</name></author><author><name sortKey="Lucas, H" uniqKey="Lucas H">H Lucas</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kumar, A" uniqKey="Kumar A">A Kumar</name></author><author><name sortKey="Bennetzen, Jl" uniqKey="Bennetzen J">JL Bennetzen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jiang, N" uniqKey="Jiang N">N Jiang</name></author><author><name sortKey="Bao, Z" uniqKey="Bao Z">Z Bao</name></author><author><name sortKey="Zhang, X" uniqKey="Zhang X">X Zhang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ammiraju, Jss" uniqKey="Ammiraju J">JSS Ammiraju</name></author><author><name sortKey="Zuccolo, A" uniqKey="Zuccolo A">A Zuccolo</name></author><author><name sortKey="Yu, Y" uniqKey="Yu Y">Y Yu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jiao, Y" uniqKey="Jiao Y">Y Jiao</name></author><author><name sortKey="Deng, Xw" uniqKey="Deng X">XW Deng</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vitte, C" uniqKey="Vitte C">C Vitte</name></author><author><name sortKey="Panaud, O" uniqKey="Panaud O">O Panaud</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Michael, Tp" uniqKey="Michael T">TP Michael</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Schmutz, J" uniqKey="Schmutz J">J Schmutz</name></author><author><name sortKey="Cannon, Sb" uniqKey="Cannon S">SB Cannon</name></author><author><name sortKey="Schlueter, J" uniqKey="Schlueter J">J Schlueter</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Paterson, Ah" uniqKey="Paterson A">AH Paterson</name></author><author><name sortKey="Bowers, Je" uniqKey="Bowers J">JE Bowers</name></author><author><name sortKey="Bruggmann, R" uniqKey="Bruggmann R">R Bruggmann</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schnable, Ps" uniqKey="Schnable P">PS Schnable</name></author><author><name sortKey="Ware, D" uniqKey="Ware D">D Ware</name></author><author><name sortKey="Fulton, Rs" uniqKey="Fulton R">RS Fulton</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Ammiraju, Js" uniqKey="Ammiraju J">JS Ammiraju</name></author><author><name sortKey="Luo, M" uniqKey="Luo M">M Luo</name></author><author><name sortKey="Goicoechea, Jl" uniqKey="Goicoechea J">JL Goicoechea</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jacquemin, J" uniqKey="Jacquemin J">J Jacquemin</name></author><author><name sortKey="Bhatia, D" uniqKey="Bhatia D">D Bhatia</name></author><author><name sortKey="Singh, K" uniqKey="Singh K">K Singh</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Piegu, B" uniqKey="Piegu B">B Piegu</name></author><author><name sortKey="Guyot, R" uniqKey="Guyot R">R Guyot</name></author><author><name sortKey="Picault, N" uniqKey="Picault N">N Picault</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Devos, Km" uniqKey="Devos K">KM Devos</name></author><author><name sortKey="Brown, Jk" uniqKey="Brown J">JK Brown</name></author><author><name sortKey="Bennetzen, Jl" uniqKey="Bennetzen J">JL Bennetzen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ma, J" uniqKey="Ma J">J Ma</name></author><author><name sortKey="Devos, Km" uniqKey="Devos K">KM Devos</name></author><author><name sortKey="Bennetzen, Jl" uniqKey="Bennetzen J">JL Bennetzen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Shirasu, K" uniqKey="Shirasu K">K Shirasu</name></author><author><name sortKey="Schulman, Ah" uniqKey="Schulman A">AH Schulman</name></author><author><name sortKey="Lahaye, T" uniqKey="Lahaye T">T Lahaye</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hawkins, Js" uniqKey="Hawkins J">JS Hawkins</name></author><author><name sortKey="Proulx, Sr" uniqKey="Proulx S">SR Proulx</name></author><author><name sortKey="Rapp, Ra" uniqKey="Rapp R">RA Rapp</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chu, Cg" uniqKey="Chu C">CG Chu</name></author><author><name sortKey="Tan, Ct" uniqKey="Tan C">CT Tan</name></author><author><name sortKey="Yu, Gt" uniqKey="Yu G">GT Yu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Varagona, Mj" uniqKey="Varagona M">MJ Varagona</name></author><author><name sortKey="Purugganan, M" uniqKey="Purugganan M">M Purugganan</name></author><author><name sortKey="Wessler, Sr" uniqKey="Wessler S">SR Wessler</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hori, Y" uniqKey="Hori Y">Y Hori</name></author><author><name sortKey="Fujimoto, R" uniqKey="Fujimoto R">R Fujimoto</name></author><author><name sortKey="Sato, Y" uniqKey="Sato Y">Y Sato</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Grandbastien, Ma" uniqKey="Grandbastien M">MA Grandbastien</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kobayashi, S" uniqKey="Kobayashi S">S Kobayashi</name></author><author><name sortKey="Goto Yamamoto, N" uniqKey="Goto Yamamoto N">N Goto-Yamamoto</name></author><author><name sortKey="Hirochika, H" uniqKey="Hirochika H">H Hirochika</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Butelli, E" uniqKey="Butelli E">E Butelli</name></author><author><name sortKey="Licciardello, C" uniqKey="Licciardello C">C Licciardello</name></author><author><name sortKey="Zhang, Y" uniqKey="Zhang Y">Y Zhang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kawase, M" uniqKey="Kawase M">M Kawase</name></author><author><name sortKey="Fukunaga, K" uniqKey="Fukunaga K">K Fukunaga</name></author><author><name sortKey="Kato, K" uniqKey="Kato K">K Kato</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hayashi, K" uniqKey="Hayashi K">K Hayashi</name></author><author><name sortKey="Yoshida, H" uniqKey="Yoshida H">H Yoshida</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Krom, N" uniqKey="Krom N">N Krom</name></author><author><name sortKey="Recla, J" uniqKey="Recla J">J Recla</name></author><author><name sortKey="Ramakrishna, W" uniqKey="Ramakrishna W">W Ramakrishna</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vitte, C" uniqKey="Vitte C">C Vitte</name></author><author><name sortKey="Chaparro, C" uniqKey="Chaparro C">C Chaparro</name></author><author><name sortKey="Quesneville, H" uniqKey="Quesneville H">H Quesneville</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mccarthy, Em" uniqKey="Mccarthy E">EM McCarthy</name></author><author><name sortKey="Liu, J" uniqKey="Liu J">J Liu</name></author><author><name sortKey="Lizhi, G" uniqKey="Lizhi G">G Lizhi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kalendar, R" uniqKey="Kalendar R">R Kalendar</name></author><author><name sortKey="Lee, D" uniqKey="Lee D">D Lee</name></author><author><name sortKey="Schulman, Ah" uniqKey="Schulman A">AH Schulman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Xu, Z" uniqKey="Xu Z">Z Xu</name></author><author><name sortKey="Wang, H" uniqKey="Wang H">H Wang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sanmiguel, P" uniqKey="Sanmiguel P">P SanMiguel</name></author><author><name sortKey="Gaut, Bs" uniqKey="Gaut B">BS Gaut</name></author><author><name sortKey="Tikhonov, A" uniqKey="Tikhonov A">A Tikhonov</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Waterhouse, Am" uniqKey="Waterhouse A">AM Waterhouse</name></author><author><name sortKey="Procter, Jb" uniqKey="Procter J">JB Procter</name></author><author><name sortKey="Martin, Dm" uniqKey="Martin D">DM Martin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tamura, K" uniqKey="Tamura K">K Tamura</name></author><author><name sortKey="Stecher, G" uniqKey="Stecher G">G Stecher</name></author><author><name sortKey="Peterson, D" uniqKey="Peterson D">D Peterson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ma, J" uniqKey="Ma J">J Ma</name></author><author><name sortKey="Bennetzen, Jl" uniqKey="Bennetzen J">JL Bennetzen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Akama, K" uniqKey="Akama K">K Akama</name></author><author><name sortKey="Tanifuji, S" uniqKey="Tanifuji S">S Tanifuji</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jiang, N" uniqKey="Jiang N">N Jiang</name></author><author><name sortKey="Jordan, Ik" uniqKey="Jordan I">IK Jordan</name></author><author><name sortKey="Wessler, Sr" uniqKey="Wessler S">SR Wessler</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nagaki, K" uniqKey="Nagaki K">K Nagaki</name></author><author><name sortKey="Neumann, P" uniqKey="Neumann P">P Neumann</name></author><author><name sortKey="Zhang, D" uniqKey="Zhang D">D Zhang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vitte, C" uniqKey="Vitte C">C Vitte</name></author><author><name sortKey="Panaud, O" uniqKey="Panaud O">O Panaud</name></author><author><name sortKey="Quesneville, H" uniqKey="Quesneville H">H Quesneville</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Roulin, A" uniqKey="Roulin A">A Roulin</name></author><author><name sortKey="Piegu, B" uniqKey="Piegu B">B Piegu</name></author><author><name sortKey="Wing, Ra" uniqKey="Wing R">RA Wing</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="El Baidouri, M" uniqKey="El Baidouri M">M El Baidouri</name></author><author><name sortKey="Carpentier, Mc" uniqKey="Carpentier M">MC Carpentier</name></author><author><name sortKey="Cooke, R" uniqKey="Cooke R">R Cooke</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Roulin, A" uniqKey="Roulin A">A Roulin</name></author><author><name sortKey="Piegu, B" uniqKey="Piegu B">B Piegu</name></author><author><name sortKey="Fortune, Pm" uniqKey="Fortune P">PM Fortune</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vitte, C" uniqKey="Vitte C">C Vitte</name></author><author><name sortKey="Ishii, T" uniqKey="Ishii T">T Ishii</name></author><author><name sortKey="Lamy, F" uniqKey="Lamy F">F Lamy</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Baucom, Rs" uniqKey="Baucom R">RS Baucom</name></author><author><name sortKey="Estill, Jc" uniqKey="Estill J">JC Estill</name></author><author><name sortKey="Leebens Mack, J" uniqKey="Leebens Mack J">J Leebens-Mack</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhang, Lb" uniqKey="Zhang L">LB Zhang</name></author><author><name sortKey="Ge, S" uniqKey="Ge S">S Ge</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Huang, X" uniqKey="Huang X">X Huang</name></author><author><name sortKey="Lu, G" uniqKey="Lu G">G Lu</name></author><author><name sortKey="Zhao, Q" uniqKey="Zhao Q">Q Zhao</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kashkush, K" uniqKey="Kashkush K">K Kashkush</name></author><author><name sortKey="Feldman, M" uniqKey="Feldman M">M Feldman</name></author><author><name sortKey="Levy, Aa" uniqKey="Levy A">AA Levy</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ahmed, I" uniqKey="Ahmed I">I Ahmed</name></author><author><name sortKey="Sarazin, A" uniqKey="Sarazin A">A Sarazin</name></author><author><name sortKey="Bowler, C" uniqKey="Bowler C">C Bowler</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gao, D" uniqKey="Gao D">D Gao</name></author><author><name sortKey="Chen, J" uniqKey="Chen J">J Chen</name></author><author><name sortKey="Chen, M" uniqKey="Chen M">M Chen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Edgar, Rc" uniqKey="Edgar R">RC Edgar</name></author></analytic></biblStruct></listBibl></div1></back></TEI><pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Evol Bioinform Online</journal-id><journal-id journal-id-type="iso-abbrev">Evol. Bioinform. Online</journal-id><journal-id journal-id-type="publisher-id">101256319</journal-id><journal-title-group><journal-title>Evolutionary Bioinformatics Online</journal-title></journal-title-group><issn pub-type="epub">1176-9343</issn><publisher><publisher-name>Libertas Academica</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">26819544</article-id><article-id pub-id-type="pmc">4718150</article-id><article-id pub-id-type="doi">10.4137/EBO.S35158</article-id><article-id pub-id-type="publisher-id">ebo-12-2016-029</article-id><article-categories><subj-group subj-group-type="heading"><subject>Original Research</subject></subj-group></article-categories><title-group><article-title>Structural Diversity of a Novel LTR Retrotransposon, <italic>RTPOSON</italic>, in the Genus <italic>Oryza</italic></article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Hsu</surname><given-names>Yu-Chia</given-names></name><xref ref-type="aff" rid="af1-ebo-12-2016-029">1</xref></contrib><contrib contrib-type="author"><name><surname>Wang</surname><given-names>Chang-Sheng</given-names></name><xref ref-type="aff" rid="af2-ebo-12-2016-029">2</xref></contrib><contrib contrib-type="author"><name><surname>Lin</surname><given-names>Yann-Rong</given-names></name><xref ref-type="aff" rid="af3-ebo-12-2016-029">3</xref></contrib><contrib contrib-type="author"><name><surname>Wu</surname><given-names>Yong-Pei</given-names></name><xref ref-type="aff" rid="af1-ebo-12-2016-029">1</xref><xref ref-type="corresp" rid="c1-ebo-12-2016-029"></xref></contrib></contrib-group><aff id="af1-ebo-12-2016-029"><label>1</label>Department of Agronomy, Chiayi Agricultural Experiment Station, Taiwan Agricultural Research Institute, Chiayi, Taiwan.</aff><aff id="af2-ebo-12-2016-029"><label>2</label>Department of Agronomy, National Chung Hsing University, Taichung, Taiwan.</aff><aff id="af3-ebo-12-2016-029"><label>3</label>Department of Agronomy, National Taiwan University, Taipei, Taiwan.</aff><author-notes><corresp id="c1-ebo-12-2016-029">CORRESPONDENCE: <email>wuypei@dns.caes.gov.tw</email></corresp></author-notes><pub-date pub-type="collection"><year>2016</year></pub-date><pub-date pub-type="epub"><day>18</day><month>1</month><year>2016</year></pub-date><volume>12</volume><fpage>29</fpage><lpage>40</lpage><history><date date-type="received"><day>21</day><month>9</month><year>2015</year></date><date date-type="rev-recd"><day>08</day><month>11</month><year>2015</year></date><date date-type="accepted"><day>16</day><month>11</month><year>2015</year></date></history><permissions><copyright-statement>© 2016 the author(s), publisher and licensee Libertas Academica Ltd.</copyright-statement><copyright-year>2016</copyright-year><license license-type="open-access"><license-p>This is an open-access article distributed under the terms of the Creative Commons CC-BY-NC 3.0 License.</license-p></license></permissions><abstract><p>Retrotransposons with long terminal repeats (LTRs) are the most abundant transposable elements in plant genomes. A novel LTR retrotransposon named <italic>RTPOSON</italic> primarily occurs in the genus <italic>Oryza</italic> and in several species of the Poaceae family. <italic>RTPOSON</italic> has been identified in the <italic>Ty1-copia</italic> group of retrotransposons because two of its open reading frames encode an uncharacterized protein and UBN2_2 and zinc knuckle, respectively. More than 700 <italic>RTPOSONs</italic> were identified in <italic>Oryza</italic> genomes; 127 <italic>RTPOSONs</italic> with LTRs and <italic>gag-pol</italic> elements were classified into three subgroups. The subgroup <italic>RTPOSON_sub3</italic> had the smallest DNA size and 97% (32/33) of <italic>RTPOSON</italic> elements from <italic>Oryza punctata</italic> are classified in this group. The insertion time of these <italic>RTPOSONs</italic> varied and their proliferation occurred within the last 8 Mya, with two bursting periods within the last 1.5–5.0 Mya. A total of 37 different orthologous insertions of <italic>RTPOSONs</italic>, with different nested transposable elements and gene fragments, were identified by comparing the genomes of ssp. <italic>japonica</italic> cv. Nipponbare and ssp. <italic>indica</italic> cv. 93–11. A part of intact <italic>RTPOSON</italic> elements was evolved independently after the divergence of <italic>indica</italic> and <italic>japonica</italic>. In addition, intact <italic>RTPOSONs</italic> and homologous fragments were preferentially retained or integrated in genic regions. This novel LTR retrotransposon, <italic>RTPOSON</italic>, might have an impact on genome evolution, genic innovation, and genetic variation.</p></abstract><kwd-group><kwd>LTR retrotransposon</kwd><kwd><italic>RTPOSON</italic></kwd><kwd>genome</kwd><kwd><italic>Oryza</italic></kwd><kwd>evolution</kwd><kwd>genetic variation</kwd></kwd-group></article-meta></front><floats-group><fig id="f1-ebo-12-2016-029" position="float"><label>Figure 1</label><caption><p>The gene structure of the novel retrotransposon, <italic>RTPOSON</italic>. (<bold>A</bold>) Structural annotation for one of the intact <italic>RTPOSON</italic> elements from <italic>O. sativa</italic> ssp. <italic>indica</italic>, 93-11. The 5′- and 3′-LTRs are shown in the light blue arrows; TSD indicates the 5-bp target site duplication; PBS indicates the primer-binding site; PPT indicates the PPT; <italic>gag-pol</italic> is able to transcribe a polyprotein that is provided for the transposition activity of retrotransposon. The gene, <italic>gag-pol</italic>, contains two ORFs, of which ORF1 contains the uncharacterized protein and ORF2 contains two domains, UBN2_2 (pfam144227) for <italic>gag</italic> and zinc knuckle (pfam00098). (<bold>B</bold>) The sequence alignment of two LTRs of intact <italic>RTPOSON</italic> elements randomly selected from 93-11. The identical nucleotides are indicated by gray shading. (<bold>C</bold>) Homology matrix between the <italic>RTPOSON</italic> element and the tobacco Ty1-<italic>copia Tnt1</italic> (X13777) internal coding region. The approximate regions corresponding to the <italic>gag</italic>, zinc knuckle, and PR domains of tobacco Ty1-<italic>copia</italic> encoded by <italic>pol</italic> are indicated below the dotted lines. The second long match region is similar to zinc knuckle of <italic>Tnt1</italic>.</p></caption><graphic xlink:href="ebo-12-2016-029f1"></graphic></fig><fig id="f2-ebo-12-2016-029" position="float"><label>Figure 2</label><caption><p>Phylogenetic tree and schematic representation for different groups of <italic>RTPOSON</italic> retrotransposons from the genus <italic>Oryza</italic>. (<bold>A</bold>) The neighbor-joining tree was constructed based on <italic>gag</italic> sequences. The <italic>gag</italic> sequences were aligned by using MUSCLE,<xref rid="b55-ebo-12-2016-029" ref-type="bibr">55</xref> and then the tree was constructed by using MEGA version 6.0. Bootstrap values were calculated for 1,000 replicates. The scale bar indicates nucleotide sequence divergence. (<bold>B</bold>) Organization and structural features of the three groups of <italic>RTPOSON</italic> retrotransposons. The representative elements were randomly selected from each group. The light and dark blue arrows represent LTRs and <italic>gag-pol</italic> regions, respectively. The gray areas represent the conserved regions between the different groups.</p></caption><graphic xlink:href="ebo-12-2016-029f2"></graphic></fig><fig id="f3-ebo-12-2016-029" position="float"><label>Figure 3</label><caption><p>The estimated insertion times of <italic>RTPOSON</italic> elements in <italic>Oryza</italic> rice. (<bold>A</bold>) The 127 intact elements from <italic>Oryza</italic> were used to estimate the insertion times of <italic>RTPOSON</italic>. Kimura distances were converted to millions of years ago using the substitution rate of 1.3 × 10<sup>−8</sup> (<bold>B</bold>) Insertion times of intact <italic>RTPOSON</italic> from eight <italic>Oryza</italic> species.</p></caption><graphic xlink:href="ebo-12-2016-029f3"></graphic></fig><fig id="f4-ebo-12-2016-029" position="float"><label>Figure 4</label><caption><p>The orthologous regions of <italic>RTPOSON</italic> elements between Nipponbare and 93-11. The differential locations of <italic>RTPOSON</italic> elements between Nipponbare and 93-11 were aligned and annotated by using the Vector NTI 7.0 program. The order shown is based on the number of TE insertion types, such as Ty1-<italic>copia</italic>, Ty3-<italic>gypsy</italic>, and <italic>En-Spm</italic>. (<bold>A</bold>–<bold>F</bold>) Different types of TEs were inserted within <italic>RTPOSON</italic> in Nipponbare and 93-11. (<bold>G</bold>) An additional copy of <italic>RTPOSON</italic> within its structure in 93-11. (<bold>H</bold>–<bold>K</bold>) The TEs or functional genes were inserted in the structure of <italic>RTPOSON</italic> in Nipponbare. (<bold>L</bold>) The truncated gene structure of <italic>RTPOSON</italic> in 93-11. (<bold>M</bold>) The intact <italic>RTPOSON</italic> was inserted in Nipponbare. A scale and a key for the domains represented in the schematic representation are shown in the bottom right-hand corner. Abbreviations and color coding of domains: LTR, long terminal repeat (light blue); <italic>gag-pol</italic>, gag and polyprotein (dark blue); genes are represented by red arrows; TEs are indicated by gray arrows; homolog flanking sequences between Nipponbare and 93-11 are represented by red and blue bars, respectively; <italic>HYP</italic>, hypothetical proteins.</p></caption><graphic xlink:href="ebo-12-2016-029f4"></graphic></fig><fig id="f5-ebo-12-2016-029" position="float"><label>Figure 5</label><caption><p>The orthologous insertion and <italic>RTPOSON</italic> elements across the genus <italic>Oryza</italic>. <italic>RTPOSON</italic> elements are present in (<bold>A</bold>) STE kinase (LOC_ Os02g44642), (<bold>B</bold>) disease-resistant RGH2B protein (LOC_Os10g22484), (<bold>C</bold>) disease-resistant RPP13-like protein 1 (LOC_Os10g04090), (<bold>D</bold>) glycosyl transferase (LOC_Os11g03160). The LTRs of <italic>RTPOSON</italic> share high similarity of UTR with (<bold>E</bold>) EARLY flowering protein (LOC_Os08g27870) and (<bold>F</bold>) dehydrogenase (LOC_Os10g41170), in each <italic>Oryza</italic> species. The white boxes and arrows represent the 5′- and 3′ UTR of the orthologous genes. The black boxes indicate the exons of genes. The light and dark blue arrows represent LTRs and <italic>gag-pol</italic> of <italic>RTPOSON</italic>, respectively. Gray areas represent conserved regions between <italic>RTPOSON</italic> and genes. The number in gray areas is sequence identity (%). The UTR position was defined based on RAP-DB (<ext-link ext-link-type="uri" xlink:href="http://rapdb.dna.affrc.go.jp/">http://rapdb.dna.affrc.go.jp/</ext-link>).</p><p><bold>Abbreviation:</bold> UTR, untranslated region.</p></caption><graphic xlink:href="ebo-12-2016-029f5"></graphic></fig><table-wrap id="t1-ebo-12-2016-029" position="float"><label>Table 1</label><caption><p>Distribution of <italic>RTPOSON</italic> in 13 <italic>Oryza</italic> species.</p></caption><table frame="box" rules="rows"><thead><tr><th rowspan="2" valign="top" align="left" colspan="1">SPECIES</th><th rowspan="2" valign="top" align="left" colspan="1">GENOME</th><th rowspan="2" valign="top" align="left" colspan="1">GENOME SIZE (Mb)<xref ref-type="table-fn" rid="tfn1-ebo-12-2016-029">1</xref></th><th colspan="4" valign="top" align="left" rowspan="1">COPY NUMBER</th></tr><tr><th valign="top" align="left" rowspan="1" colspan="1">INTACT</th><th valign="top" align="left" rowspan="1" colspan="1">FRAGMENT</th><th valign="top" align="left" rowspan="1" colspan="1">SOLO-LTR</th><th valign="top" align="left" rowspan="1" colspan="1">TOTAL</th></tr></thead><tbody><tr><td valign="top" align="left" rowspan="1" colspan="1"><italic>O. sativa</italic> ssp. <italic>japonica</italic></td><td valign="top" align="left" rowspan="1" colspan="1">AA</td><td valign="top" align="left" rowspan="1" colspan="1">389</td><td valign="top" align="left" rowspan="1" colspan="1">15</td><td valign="top" align="left" rowspan="1" colspan="1">37</td><td valign="top" align="left" rowspan="1" colspan="1">41</td><td valign="top" align="left" rowspan="1" colspan="1">93</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1"><italic>O. sativa</italic> ssp. <italic>indica</italic></td><td valign="top" align="left" rowspan="1" colspan="1">AA</td><td valign="top" align="left" rowspan="1" colspan="1">400</td><td valign="top" align="left" rowspan="1" colspan="1">13</td><td valign="top" align="left" rowspan="1" colspan="1">40</td><td valign="top" align="left" rowspan="1" colspan="1">32</td><td valign="top" align="left" rowspan="1" colspan="1">85</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1"><italic>O. nivara</italic></td><td valign="top" align="left" rowspan="1" colspan="1">AA</td><td valign="top" align="left" rowspan="1" colspan="1">448</td><td valign="top" align="left" rowspan="1" colspan="1">14</td><td valign="top" align="left" rowspan="1" colspan="1">26</td><td valign="top" align="left" rowspan="1" colspan="1">30</td><td valign="top" align="left" rowspan="1" colspan="1">70</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1"><italic>O. rufipogon</italic><xref ref-type="table-fn" rid="tfn2-ebo-12-2016-029">2</xref></td><td valign="top" align="left" rowspan="1" colspan="1">AA</td><td valign="top" align="left" rowspan="1" colspan="1">445</td><td valign="top" align="left" rowspan="1" colspan="1">1</td><td valign="top" align="left" rowspan="1" colspan="1">4</td><td valign="top" align="left" rowspan="1" colspan="1">2</td><td valign="top" align="left" rowspan="1" colspan="1">7</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1"><italic>O. glaberrima</italic></td><td valign="top" align="left" rowspan="1" colspan="1">AA</td><td valign="top" align="left" rowspan="1" colspan="1">354</td><td valign="top" align="left" rowspan="1" colspan="1">16</td><td valign="top" align="left" rowspan="1" colspan="1">18</td><td valign="top" align="left" rowspan="1" colspan="1">33</td><td valign="top" align="left" rowspan="1" colspan="1">67</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1"><italic>O. barthii</italic></td><td valign="top" align="left" rowspan="1" colspan="1">AA</td><td valign="top" align="left" rowspan="1" colspan="1">411</td><td valign="top" align="left" rowspan="1" colspan="1">18</td><td valign="top" align="left" rowspan="1" colspan="1">28</td><td valign="top" align="left" rowspan="1" colspan="1">26</td><td valign="top" align="left" rowspan="1" colspan="1">72</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1"><italic>O. meridionalis</italic></td><td valign="top" align="left" rowspan="1" colspan="1">AA</td><td valign="top" align="left" rowspan="1" colspan="1">435</td><td valign="top" align="left" rowspan="1" colspan="1">5</td><td valign="top" align="left" rowspan="1" colspan="1">27</td><td valign="top" align="left" rowspan="1" colspan="1">41</td><td valign="top" align="left" rowspan="1" colspan="1">73</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1"><italic>O. glumaepatula</italic></td><td valign="top" align="left" rowspan="1" colspan="1">AA</td><td valign="top" align="left" rowspan="1" colspan="1">464</td><td valign="top" align="left" rowspan="1" colspan="1">10</td><td valign="top" align="left" rowspan="1" colspan="1">32</td><td valign="top" align="left" rowspan="1" colspan="1">41</td><td valign="top" align="left" rowspan="1" colspan="1">83</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1"><italic>O. punctata</italic></td><td valign="top" align="left" rowspan="1" colspan="1">BB</td><td valign="top" align="left" rowspan="1" colspan="1">423</td><td valign="top" align="left" rowspan="1" colspan="1">33</td><td valign="top" align="left" rowspan="1" colspan="1">25</td><td valign="top" align="left" rowspan="1" colspan="1">18</td><td valign="top" align="left" rowspan="1" colspan="1">76</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1"><italic>O. minuta</italic><xref ref-type="table-fn" rid="tfn2-ebo-12-2016-029">2</xref></td><td valign="top" align="left" rowspan="1" colspan="1">BBCC</td><td valign="top" align="left" rowspan="1" colspan="1">1,124</td><td valign="top" align="left" rowspan="1" colspan="1">1</td><td valign="top" align="left" rowspan="1" colspan="1">2</td><td valign="top" align="left" rowspan="1" colspan="1">7</td><td valign="top" align="left" rowspan="1" colspan="1">10</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1"><italic>O. officinalis</italic><xref ref-type="table-fn" rid="tfn2-ebo-12-2016-029">2</xref></td><td valign="top" align="left" rowspan="1" colspan="1">CC</td><td valign="top" align="left" rowspan="1" colspan="1">653</td><td valign="top" align="left" rowspan="1" colspan="1">1</td><td valign="top" align="left" rowspan="1" colspan="1">11</td><td valign="top" align="left" rowspan="1" colspan="1">13</td><td valign="top" align="left" rowspan="1" colspan="1">25</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1"><italic>O. brachyantha</italic></td><td valign="top" align="left" rowspan="1" colspan="1">FF</td><td valign="top" align="left" rowspan="1" colspan="1">260</td><td valign="top" align="left" rowspan="1" colspan="1">0</td><td valign="top" align="left" rowspan="1" colspan="1">6</td><td valign="top" align="left" rowspan="1" colspan="1">13</td><td valign="top" align="left" rowspan="1" colspan="1">19</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1"><italic>O. granulata</italic><xref ref-type="table-fn" rid="tfn2-ebo-12-2016-029">2</xref></td><td valign="top" align="left" rowspan="1" colspan="1">GG</td><td valign="top" align="left" rowspan="1" colspan="1">862</td><td valign="top" align="left" rowspan="1" colspan="1">0</td><td valign="top" align="left" rowspan="1" colspan="1">6</td><td valign="top" align="left" rowspan="1" colspan="1">19</td><td valign="top" align="left" rowspan="1" colspan="1">25</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1">Total</td><td valign="top" align="left" rowspan="1" colspan="1"></td><td valign="top" align="left" rowspan="1" colspan="1"></td><td valign="top" align="left" rowspan="1" colspan="1">127</td><td valign="top" align="left" rowspan="1" colspan="1">262</td><td valign="top" align="left" rowspan="1" colspan="1">316</td><td valign="top" align="left" rowspan="1" colspan="1">705</td></tr></tbody></table><table-wrap-foot><fn><p><bold>Notes:</bold></p></fn><fn id="tfn1-ebo-12-2016-029"><label>1</label><p>Reference from the study by Jacquemin et al.<xref rid="b18-ebo-12-2016-029" ref-type="bibr">18</xref></p></fn><fn id="tfn2-ebo-12-2016-029"><label>2</label><p>A limited number of sequences were searched and collected from rice chromosome 3 in Gramene website.</p></fn></table-wrap-foot></table-wrap><table-wrap id="t2-ebo-12-2016-029" position="float"><label>Table 2</label><caption><p>Insertion sites of intact <italic>RTPOSON</italic> in <italic>japonica</italic> rice genome.</p></caption><table frame="box" rules="rows"><thead><tr><th valign="top" align="left" rowspan="1" colspan="1">INSERTION SITE</th><th valign="top" align="left" rowspan="1" colspan="1">NO. OF ELEMENT</th></tr></thead><tbody><tr><td valign="top" align="left" rowspan="1" colspan="1">Intergenic region</td><td valign="top" align="left" rowspan="1" colspan="1">64</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1">Gene</td><td valign="top" align="left" rowspan="1" colspan="1">11</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1"> intron</td><td valign="top" align="left" rowspan="1" colspan="1">9</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1"> exon</td><td valign="top" align="left" rowspan="1" colspan="1">0</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1"> 5′- or 3′-UTR</td><td valign="top" align="left" rowspan="1" colspan="1">2</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1">Putative gene</td><td valign="top" align="left" rowspan="1" colspan="1">9</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1">Within 1 kb flaking gene</td><td valign="top" align="left" rowspan="1" colspan="1">24</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1">Within other types of TEs</td><td valign="top" align="left" rowspan="1" colspan="1">19</td></tr><tr><td valign="top" align="left" rowspan="1" colspan="1">Total</td><td valign="top" align="left" rowspan="1" colspan="1">127</td></tr></tbody></table></table-wrap></floats-group></pmc><affiliations><list><country><li>Taïwan</li></country></list><tree><country name="Taïwan"><noRegion><name sortKey="Hsu, Yu Chia" sort="Hsu, Yu Chia" uniqKey="Hsu Y" first="Yu-Chia" last="Hsu">Yu-Chia Hsu</name></noRegion><name sortKey="Lin, Yann Rong" sort="Lin, Yann Rong" uniqKey="Lin Y" first="Yann-Rong" last="Lin">Yann-Rong Lin</name><name sortKey="Wang, Chang Sheng" sort="Wang, Chang Sheng" uniqKey="Wang C" first="Chang-Sheng" last="Wang">Chang-Sheng Wang</name><name sortKey="Wu, Yong Pei" sort="Wu, Yong Pei" uniqKey="Wu Y" first="Yong-Pei" last="Wu">Yong-Pei Wu</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Bois/explor/OrangerV1/Data/Ncbi/Merge
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001E84 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Ncbi/Merge/biblio.hfd -nk 001E84 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Bois
|area= OrangerV1
|flux= Ncbi
|étape= Merge
|type= RBID
|clé= PMC:4718150
|texte= Structural Diversity of a Novel LTR Retrotransposon, RTPOSON, in the Genus Oryza
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Ncbi/Merge/RBID.i -Sk "pubmed:26819544" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Ncbi/Merge/biblio.hfd \
| NlmPubMed2Wicri -a OrangerV1
| This area was generated with Dilib version V0.6.25. |  |