Lack of conservation of bacterial type promoters in plastids of Streptophyta
Identifieur interne : 000B72 ( Ncbi/Merge ); précédent : 000B71; suivant : 000B73Lack of conservation of bacterial type promoters in plastids of Streptophyta
Auteurs : Vassily A. Lyubetsky [Russie] ; Lev I. Rubanov [Russie] ; Alexandr V. Seliverstov [Russie]Source :
- Biology Direct [ 1745-6150 ] ; 2010.
Abstract
We demonstrate the scarcity of conserved bacterial-type promoters in plastids of Streptophyta and report widely conserved promoters only for genes
This article was reviewed by Dr. Arcady Mushegian, and by Dr. Alexander Bolshoy and Dr. Yuri Wolf (both nominated by Dr. Purificación López-García).
Url:
DOI: 10.1186/1745-6150-5-34
PubMed: 20459727
PubMed Central: 2881121
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PMC:2881121Le document en format XML
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<p>We demonstrate the scarcity of conserved bacterial-type promoters in plastids of Streptophyta and report widely conserved promoters only for genes <italic>psaA, psbA, psbB, psbE, rbcL</italic>
. Among the reasonable explanations are: evolutionary changes of sigma subunit paralogs and phage-type RNA polymerases possibly entailing the loss of corresponding nuclear genes, <italic>de novo </italic>
emergence of the promoters, their loss together with plastome genes; functional substitution of the promoter boxes by transcription activation factor binding sites.</p>
</sec>
<sec><title>Reviewers</title>
<p>This article was reviewed by Dr. Arcady Mushegian, and by Dr. Alexander Bolshoy and Dr. Yuri Wolf (both nominated by Dr. Purificación López-García).</p>
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<front><journal-meta><journal-id journal-id-type="nlm-ta">Biol Direct</journal-id>
<journal-title-group><journal-title>Biology Direct</journal-title>
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<issn pub-type="epub">1745-6150</issn>
<publisher><publisher-name>BioMed Central</publisher-name>
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<article-meta><article-id pub-id-type="pmid">20459727</article-id>
<article-id pub-id-type="pmc">2881121</article-id>
<article-id pub-id-type="publisher-id">1745-6150-5-34</article-id>
<article-id pub-id-type="doi">10.1186/1745-6150-5-34</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Discovery notes</subject>
</subj-group>
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<title-group><article-title>Lack of conservation of bacterial type promoters in plastids of Streptophyta</article-title>
</title-group>
<contrib-group><contrib contrib-type="author" corresp="yes" id="A1"><name><surname>Lyubetsky</surname>
<given-names>Vassily A</given-names>
</name>
<xref ref-type="aff" rid="I1">1</xref>
<email>lyubetsk@iitp.ru</email>
</contrib>
<contrib contrib-type="author" id="A2"><name><surname>Rubanov</surname>
<given-names>Lev I</given-names>
</name>
<xref ref-type="aff" rid="I1">1</xref>
<email>rubanov@iitp.ru</email>
</contrib>
<contrib contrib-type="author" id="A3"><name><surname>Seliverstov</surname>
<given-names>Alexandr V</given-names>
</name>
<xref ref-type="aff" rid="I1">1</xref>
<email>slvstv@iitp.ru</email>
</contrib>
</contrib-group>
<aff id="I1"><label>1</label>
Institute for Information Transmission Problems of the Russian Academy of Sciences, 19, Bolshoy Karetny per., Moscow, 127994, Russia</aff>
<pub-date pub-type="collection"><year>2010</year>
</pub-date>
<pub-date pub-type="epub"><day>10</day>
<month>5</month>
<year>2010</year>
</pub-date>
<volume>5</volume>
<fpage>34</fpage>
<lpage>34</lpage>
<history><date date-type="received"><day>20</day>
<month>4</month>
<year>2010</year>
</date>
<date date-type="accepted"><day>10</day>
<month>5</month>
<year>2010</year>
</date>
</history>
<permissions><copyright-statement>Copyright ©2010 Lyubetsky et al; licensee BioMed Central Ltd.</copyright-statement>
<copyright-year>2010</copyright-year>
<copyright-holder>Lyubetsky et al; licensee BioMed Central Ltd.</copyright-holder>
<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/2.0"><license-p>This is an Open Access article distributed under the terms of the Creative Commons Attribution License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/2.0">http://creativecommons.org/licenses/by/2.0</ext-link>
), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
</license>
</permissions>
<self-uri xlink:href="http://www.biology-direct.com/content/5/1/34"></self-uri>
<abstract><sec><title></title>
<p>We demonstrate the scarcity of conserved bacterial-type promoters in plastids of Streptophyta and report widely conserved promoters only for genes <italic>psaA, psbA, psbB, psbE, rbcL</italic>
. Among the reasonable explanations are: evolutionary changes of sigma subunit paralogs and phage-type RNA polymerases possibly entailing the loss of corresponding nuclear genes, <italic>de novo </italic>
emergence of the promoters, their loss together with plastome genes; functional substitution of the promoter boxes by transcription activation factor binding sites.</p>
</sec>
<sec><title>Reviewers</title>
<p>This article was reviewed by Dr. Arcady Mushegian, and by Dr. Alexander Bolshoy and Dr. Yuri Wolf (both nominated by Dr. Purificación López-García).</p>
</sec>
</abstract>
</article-meta>
</front>
</pmc>
<affiliations><list><country><li>Russie</li>
</country>
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<tree><country name="Russie"><noRegion><name sortKey="Lyubetsky, Vassily A" sort="Lyubetsky, Vassily A" uniqKey="Lyubetsky V" first="Vassily A" last="Lyubetsky">Vassily A. Lyubetsky</name>
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<name sortKey="Rubanov, Lev I" sort="Rubanov, Lev I" uniqKey="Rubanov L" first="Lev I" last="Rubanov">Lev I. Rubanov</name>
<name sortKey="Seliverstov, Alexandr V" sort="Seliverstov, Alexandr V" uniqKey="Seliverstov A" first="Alexandr V" last="Seliverstov">Alexandr V. Seliverstov</name>
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